Cla014933.1 (mRNA) Watermelon (97103) v1

Overview
NameCla014933
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionTy3-gypsy retrotransposon protein (AHRD V1 *-*- E5GBB0_CUCME)
LocationChr9 : 7753068 .. 7753544 (+)
Sequence length477
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATCAAAAGACAATGCTCCTAACGCTTCAAGTGACACCTCTAGAAGACCGATTACTCGCAGCCGCTCTAAGGAAATACAATTGGAAGAGCAACCTACCTTTGAGATTGCAAGAAATATATGGGAGCGAATCTCAAGAGACCCGAAAGTTGGGGTCGTCATCAAAGAGAATCCTGCACTTGACAAGCATACCTCAGCTTCTGAACAATCAAGCGAGGAGGCATCCCAACCAAATGTAATATCAGTCATGGTGGCTGACGTGGGAACAAGTAAGGAGATGAGCTCGAAAAGAAAGTTAACATGCTATGGAAGGCAGTTAAAGAAAGGGATTATGAGATTGCATCCCTCAAGAATCATATTGAAAGTCGTGATGTGGCTGAATCAAGTCATACACCTGCAATCAAGAACAATGACAAAGGGAAGAAGGATTCGACTTCAATTGCTTTGCTATCTGTTCAGCAGTTGCAGGAGATGA

mRNA sequence

ATGACATCAAAAGACAATGCTCCTAACGCTTCAAGTGACACCTCTAGAAGACCGATTACTCGCAGCCGCTCTAAGGAAATACAATTGGAAGAGCAACCTACCTTTGAGATTGCAAGAAATATATGGGAGCGAATCTCAAGAGACCCGAAAGTTGGGGTCGTCATCAAAGAGAATCCTGCACTTGACAAGCATACCTCAGCTTCTGAACAATCAAGCGAGGAGGCATCCCAACCAAATGTAATATCAGTCATGGTGGCTGACGTGGGAACAAGTAAGGAGATGAGCTCGAAAAGAAAGTTAACATGCTATGGAAGGCAGTTAAAGAAAGGGATTATGAGATTGCATCCCTCAAGAATCATATTGAAAGTCGTGATGTGGCTGAATCAAGTCATACACCTGCAATCAAGAACAATGACAAAGGGAAGAAGGATTCGACTTCAATTGCTTTGCTATCTGTTCAGCAGTTGCAGGAGATGA

Coding sequence (CDS)

ATGACATCAAAAGACAATGCTCCTAACGCTTCAAGTGACACCTCTAGAAGACCGATTACTCGCAGCCGCTCTAAGGAAATACAATTGGAAGAGCAACCTACCTTTGAGATTGCAAGAAATATATGGGAGCGAATCTCAAGAGACCCGAAAGTTGGGGTCGTCATCAAAGAGAATCCTGCACTTGACAAGCATACCTCAGCTTCTGAACAATCAAGCGAGGAGGCATCCCAACCAAATGTAATATCAGTCATGGTGGCTGACGTGGGAACAAGTAAGGAGATGAGCTCGAAAAGAAAGTTAACATGCTATGGAAGGCAGTTAAAGAAAGGGATTATGAGATTGCATCCCTCAAGAATCATATTGAAAGTCGTGATGTGGCTGAATCAAGTCATACACCTGCAATCAAGAACAATGACAAAGGGAAGAAGGATTCGACTTCAATTGCTTTGCTATCTGTTCAGCAGTTGCAGGAGATGA

Protein sequence

MTSKDNAPNASSDTSRRPITRSRSKEIQLEEQPTFEIARNIWERISRDPKVGVVIKENPALDKHTSASEQSSEEASQPNVISVMVADVGTSKEMSSKRKLTCYGRQLKKGIMRLHPSRIILKVVMWLNQVIHLQSRTMTKGRRIRLQLLCYLFSSCRR
Homology
[Close]
BLAST of Cla014933 vs. TrEMBL
Match: E5GBB0_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 8.3e-22
Identity = 56/93 (60.22%), Postives = 71/93 (76.34%), Query Frame = 1 

Query: 1  MTSKDNAPNASSDTSRRPITRSRSKEIQL-EEQPTFEIARNIWERISRDPKVGVVIKENP 60
          MTS+ N   A SD  +RP TRS S+EIQ  E+   FE+A+NIWE+IS+ PK G++IKENP
Sbjct: 1  MTSQGNTSKALSDIGKRPNTRSCSREIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKENP 60

Query: 61 ALDKHTSASEQSSEEASQPNVISVMVADVGTSK 93
          A+DKH S SE S+EEA QPN++SVMV DV TS+
Sbjct: 61 AIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSE 93

[Close]
BLAST of Cla014933 vs. TrEMBL
Match: E5GCM2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.3e-06
Identity = 30/77 (38.96%), Postives = 46/77 (59.74%), Query Frame = 1 

Query: 12 SDTSRRPITRSRSKEIQLEEQPTFEIARNIWERISRDPKVGVVIKENPALDKHTSASEQS 71
          +DT  R I +S SK    +++    +A+  WE++   PK G++IKENP  +  T AS  S
Sbjct: 14 NDTYTRLIVQSHSKRSTQKQEQNSVLAKKSWEQLMESPKCGIIIKENPLFEDSTPASNLS 73

Query: 72 SEEASQPNVISVMVADV 89
           +E S   V+S+M+ADV
Sbjct: 74 EKE-SHLEVVSIMMADV 89

[Close]
BLAST of Cla014933 vs. NCBI nr
Match: gi|307135887|gb|ADN33752.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-21
Identity = 56/93 (60.22%), Postives = 71/93 (76.34%), Query Frame = 1 

Query: 1  MTSKDNAPNASSDTSRRPITRSRSKEIQL-EEQPTFEIARNIWERISRDPKVGVVIKENP 60
          MTS+ N   A SD  +RP TRS S+EIQ  E+   FE+A+NIWE+IS+ PK G++IKENP
Sbjct: 1  MTSQGNTSKALSDIGKRPNTRSCSREIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKENP 60

Query: 61 ALDKHTSASEQSSEEASQPNVISVMVADVGTSK 93
          A+DKH S SE S+EEA QPN++SVMV DV TS+
Sbjct: 61 AIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSE 93

[Close]
BLAST of Cla014933 vs. NCBI nr
Match: gi|659113191|ref|XP_008456446.1| (PREDICTED: uncharacterized protein LOC103496389 [Cucumis melo])

HSP 1 Score: 64.7 bits (156), Expect = 1.7e-07
Identity = 38/90 (42.22%), Postives = 55/90 (61.11%), Query Frame = 1 

Query: 1  MTSKDNAPNA--SSDTSRRPITRSRSKEIQLEEQPTFEIARNIWERISRDPKVGVVIKEN 60
          M SK  A N+  +SD    PITRSRSK I  E+     + ++I +++   PK G+VIK+N
Sbjct: 1  MASKKVASNSYVASDAYTGPITRSRSKGIIQEQDQDSNVVQSILKQLMESPKAGIVIKKN 60

Query: 61 PALDKHTSASEQSSEEASQPNVISVMVADV 89
          P  D    AS  S ++A  P+V+SVM+AD+
Sbjct: 61 PLYDNSDLASSMSKKKA-HPDVMSVMMADI 89

The following BLAST results are available for this feature:
BLAST of Cla014933 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBB0_CUCME8.3e-2260.22Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCM2_CUCME8.3e-0638.96Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of Cla014933 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307135887|gb|ADN33752.1|1.2e-2160.22ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659113191|ref|XP_008456446.1|1.7e-0742.22PREDICTED: uncharacterized protein LOC103496389 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla014933Cla014933gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla014933Cla014933.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla014933.1.cds1Cla014933.1.cds1CDS