Cla013470.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla013470
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Molybdenum cofactor sulfurase (AHRD V1 ***- F4PU48_DICFS)
Location	Chr2 : 29030513 .. 29030949 (-)
Sequence length	222

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCGGCCAAGGAGGAGTTTCTCAAGGAGTTCGGTCGAGACTACGGCTATCCCGGCGGTCCAAAAACCATCGATGAAATTCGAGCCACTGAATTTAAGCGCCTAGGTGGTAAGATTTCGATCCAGTTTTGAGAAAGTGATCGTAGTGGACCATGCTGTTTAAGCTGTCGATATCTTTTAATCTCCGCCATCCTTTTTGCTCTATTTAATAATTAAGAGCAAATATATCAATTAGCTTGGAGTCAAACATTCAGAATTTTTCGTATTATTTTACTTTCTGTTTTCTCCTGCTTTTCTCCATTACTAAACATTCAAATTCGGTAGGTATGGCCTACTTGGACCACGCAGCAGCAACTTTGTATTCCGAGCTACAAATGGAGGCGATCTTCAAAGATCTCACTTCTAATATATATGGAAATCCTCGTATCCTTTAA

mRNA sequence

ATGGACGCGGCCAAGGAGGAGTTTCTCAAGGAGTTCGGTCGAGACTACGGCTATCCCGGCGGTCCAAAAACCATCGATGAAATTCGAGCCACTGAATTTAAGCGCCTAGGTGGTATGGCCTACTTGGACCACGCAGCAGCAACTTTGTATTCCGAGCTACAAATGGAGGCGATCTTCAAAGATCTCACTTCTAATATATATGGAAATCCTCGTATCCTTTAA

Coding sequence (CDS)

ATGGACGCGGCCAAGGAGGAGTTTCTCAAGGAGTTCGGTCGAGACTACGGCTATCCCGGCGGTCCAAAAACCATCGATGAAATTCGAGCCACTGAATTTAAGCGCCTAGGTGGTATGGCCTACTTGGACCACGCAGCAGCAACTTTGTATTCCGAGCTACAAATGGAGGCGATCTTCAAAGATCTCACTTCTAATATATATGGAAATCCTCGTATCCTTTAA

Protein sequence

MDAAKEEFLKEFGRDYGYPGGPKTIDEIRATEFKRLGGMAYLDHAAATLYSELQMEAIFKDLTSNIYGNPRIL

Homology

[Close]

BLAST of Cla013470 vs. Swiss-Prot
Match: MOCOS_ORYSJ (Molybdenum cofactor sulfurase OS=Oryza sativa subsp. japonica GN=MCSU3 PE=2 SV=2)

HSP 1 Score: 112.1 bits (279), Expect = 2.6e-24
Identity = 50/70 (71.43%), Postives = 56/70 (80.00%), Query Frame = 1


Query: 1  MDAAKEEFLKEFGRDYGYPGGPKTIDEIRATEFKRLGGMAYLDHAAATLYSELQMEAIFK 60
          M+ +KEEFL++FG DYGYPG PK +DE+RA EFKRL GMAYLDHA ATLYSE QM  + K
Sbjct: 1  MEVSKEEFLRQFGGDYGYPGAPKGVDEMRAAEFKRLEGMAYLDHAGATLYSEAQMADVLK 60

Query: 61 DLTSNIYGNP 71
          DL SN+YGNP
Sbjct: 61 DLASNVYGNP 70

[Close]

BLAST of Cla013470 vs. Swiss-Prot
Match: MOCOS_SOLLC (Molybdenum cofactor sulfurase OS=Solanum lycopersicum GN=FLACCA PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.2e-22
Identity = 49/70 (70.00%), Postives = 53/70 (75.71%), Query Frame = 1


Query: 1  MDAAKEEFLKEFGRDYGYPGGPKTIDEIRATEFKRLGGMAYLDHAAATLYSELQMEAIFK 60
          +++ KE+FLKEFG  YGY   PK IDEIRATEFKRL    YLDHA ATLYSE QMEA+FK
Sbjct: 3  IESEKEQFLKEFGSYYGYANSPKNIDEIRATEFKRLNDTVYLDHAGATLYSESQMEAVFK 62

Query: 61 DLTSNIYGNP 71
          DL S +YGNP
Sbjct: 63 DLNSTLYGNP 72

[Close]

BLAST of Cla013470 vs. Swiss-Prot
Match: MOCOS_ARATH (Molybdenum cofactor sulfurase OS=Arabidopsis thaliana GN=ABA3 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.0e-20
Identity = 49/66 (74.24%), Postives = 51/66 (77.27%), Query Frame = 1


Query: 6  EEFLKEFGRDYGYPGGPKTIDEIRATEFKRLG-GMAYLDHAAATLYSELQMEAIFKDLTS 65
          E FLKEFG  YGYP GPK I EIR TEFKRL  G+ YLDHA +TLYSELQME IFKD TS
Sbjct: 2  EAFLKEFGDYYGYPDGPKNIQEIRDTEFKRLDKGVVYLDHAGSTLYSELQMEYIFKDFTS 61

Query: 66 NIYGNP 71
          N++GNP
Sbjct: 62 NVFGNP 67

[Close]

BLAST of Cla013470 vs. Swiss-Prot
Match: MOCOS_HUMAN (Molybdenum cofactor sulfurase OS=Homo sapiens GN=MOCOS PE=1 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 2.2e-10
Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 1


Query: 16 YGYPGGPKTIDEIRATEFKRLGGMAYLDHAAATLYSELQMEAIFKDLTSNIYGNP 71
          YGY  GP ++ E+RA EF RL G  YLDHA ATL+S+ Q+E+   DL  N YGNP
Sbjct: 28 YGY--GPGSLRELRAREFSRLAGTVYLDHAGATLFSQSQLESFTSDLMENTYGNP 80

[Close]

BLAST of Cla013470 vs. Swiss-Prot
Match: MOCOS_BOVIN (Molybdenum cofactor sulfurase OS=Bos taurus GN=MOCOS PE=2 SV=3)

HSP 1 Score: 61.6 bits (148), Expect = 4.1e-09
Identity = 29/55 (52.73%), Postives = 34/55 (61.82%), Query Frame = 1


Query: 16 YGYPGGPKTIDEIRATEFKRLGGMAYLDHAAATLYSELQMEAIFKDLTSNIYGNP 71
          YGY  G  T+ E+RA EF RL G  YLDHA  TL+ + Q+ +  KDL  N+YGNP
Sbjct: 28 YGYGRG--TLHELRAREFGRLAGTVYLDHAGTTLFPQSQITSFMKDLMENVYGNP 80

[Close]

BLAST of Cla013470 vs. TrEMBL
Match: A0A0A0KD86_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G139140 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 5.0e-30
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 1  MDAAKEEFLKEFGRDYGYPGGPKTIDEIRATEFKRLGGMAYLDHAAATLYSELQMEAIFK 60
          MD AKEEFL+EFGRDYGYPGGPKTIDEIRATEFKRL GMAYLDHA ATLYSELQMEAIFK
Sbjct: 1  MDVAKEEFLREFGRDYGYPGGPKTIDEIRATEFKRLSGMAYLDHAGATLYSELQMEAIFK 60

Query: 61 DLTSNIYGNP 71
          DLT+N+YGNP
Sbjct: 61 DLTANVYGNP 70

[Close]

BLAST of Cla013470 vs. TrEMBL
Match: M5WM28_PRUPE (Molybdenum cofactor sulfurase OS=Prunus persica GN=PRUPE_ppa001477mg PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.8e-25
Identity = 55/70 (78.57%), Postives = 62/70 (88.57%), Query Frame = 1


Query: 1  MDAAKEEFLKEFGRDYGYPGGPKTIDEIRATEFKRLGGMAYLDHAAATLYSELQMEAIFK 60
          M+A+KE FL+EFG  YGYP GPKTIDEIRATEFKRL G+ YLDHA AT+YSELQMEAIFK
Sbjct: 1  MEASKEAFLREFGEHYGYPNGPKTIDEIRATEFKRLDGLVYLDHAGATMYSELQMEAIFK 60

Query: 61 DLTSNIYGNP 71
          D T+N+YGNP
Sbjct: 61 DFTTNVYGNP 70

[Close]

BLAST of Cla013470 vs. TrEMBL
Match: A0A103YJF2_CYNCS (Molybdenum cofactor sulfurase OS=Cynara cardunculus var. scolymus GN=Ccrd_011351 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.8e-25
Identity = 56/73 (76.71%), Postives = 62/73 (84.93%), Query Frame = 1


Query: 1  MDAAKEEFLKEFGRDYGYPGGPKTIDEIRATEFKRLGGMAYLDHAAATLYSELQMEAIFK 60
          M+ AK++FLKEFG  YGYP  PK ID+IRATEFKRL G  YLDHA ATLYSELQMEAIFK
Sbjct: 10 METAKQQFLKEFGESYGYPNAPKNIDDIRATEFKRLDGNVYLDHAGATLYSELQMEAIFK 69

Query: 61 DLTSNIYGNPRIL 74
          DLT+ +YGNPRIL
Sbjct: 70 DLTTTVYGNPRIL 82

[Close]

BLAST of Cla013470 vs. TrEMBL
Match: A0A0B5A169_9FABA (Molybdenum cofactor sulfurase OS=Ammopiptanthus nanus PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-24
Identity = 54/70 (77.14%), Postives = 62/70 (88.57%), Query Frame = 1


Query: 1  MDAAKEEFLKEFGRDYGYPGGPKTIDEIRATEFKRLGGMAYLDHAAATLYSELQMEAIFK 60
          MD AK+EFLKEFG DYGYP GPK+I++IR TEFKRL G+ YLDHA ATLYSELQME++F 
Sbjct: 1  MDDAKKEFLKEFGEDYGYPNGPKSIEQIRDTEFKRLQGLVYLDHAGATLYSELQMESVFN 60

Query: 61 DLTSNIYGNP 71
          DLTSN+YGNP
Sbjct: 61 DLTSNVYGNP 70

[Close]

BLAST of Cla013470 vs. TrEMBL
Match: A0A0J8BKH1_BETVU (Molybdenum cofactor sulfurase OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g219130 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-23
Identity = 56/71 (78.87%), Postives = 61/71 (85.92%), Query Frame = 1


Query: 1  MDAAKEEFLKEFGRDYGYPGGPKTIDEIRATEFKRLGG-MAYLDHAAATLYSELQMEAIF 60
          M+  KE+FLKEFG+ YGYP GPK+IDEIRATEFKRL     YLDHA ATLYSELQMEAIF
Sbjct: 1  MEMEKEQFLKEFGKSYGYPDGPKSIDEIRATEFKRLANETVYLDHAGATLYSELQMEAIF 60

Query: 61 KDLTSNIYGNP 71
          KDLTSN+YGNP
Sbjct: 61 KDLTSNVYGNP 71

[Close]

BLAST of Cla013470 vs. NCBI nr
Match: gi|659112820|ref|XP_008456326.1| (PREDICTED: molybdenum cofactor sulfurase isoform X11 [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 5.5e-30
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MDAAKEEFLKEFGRDYGYPGGPKTIDEIRATEFKRLGGMAYLDHAAATLYSELQMEAIFK 60
          MDAAKEEFL+EFGRDYGYPGGPKTIDEIRA EFKRLGGMAYLDHA ATLYSELQME+IFK
Sbjct: 1  MDAAKEEFLREFGRDYGYPGGPKTIDEIRAIEFKRLGGMAYLDHAGATLYSELQMESIFK 60

Query: 61 DLTSNIYGNP 71
          DLT+N+YGNP
Sbjct: 61 DLTANVYGNP 70

[Close]

BLAST of Cla013470 vs. NCBI nr
Match: gi|659112829|ref|XP_008456331.1| (PREDICTED: molybdenum cofactor sulfurase isoform X15 [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 5.5e-30
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MDAAKEEFLKEFGRDYGYPGGPKTIDEIRATEFKRLGGMAYLDHAAATLYSELQMEAIFK 60
          MDAAKEEFL+EFGRDYGYPGGPKTIDEIRA EFKRLGGMAYLDHA ATLYSELQME+IFK
Sbjct: 1  MDAAKEEFLREFGRDYGYPGGPKTIDEIRAIEFKRLGGMAYLDHAGATLYSELQMESIFK 60

Query: 61 DLTSNIYGNP 71
          DLT+N+YGNP
Sbjct: 61 DLTANVYGNP 70

[Close]

BLAST of Cla013470 vs. NCBI nr
Match: gi|659112824|ref|XP_008456328.1| (PREDICTED: molybdenum cofactor sulfurase isoform X13 [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 5.5e-30
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MDAAKEEFLKEFGRDYGYPGGPKTIDEIRATEFKRLGGMAYLDHAAATLYSELQMEAIFK 60
          MDAAKEEFL+EFGRDYGYPGGPKTIDEIRA EFKRLGGMAYLDHA ATLYSELQME+IFK
Sbjct: 1  MDAAKEEFLREFGRDYGYPGGPKTIDEIRAIEFKRLGGMAYLDHAGATLYSELQMESIFK 60

Query: 61 DLTSNIYGNP 71
          DLT+N+YGNP
Sbjct: 61 DLTANVYGNP 70

[Close]

BLAST of Cla013470 vs. NCBI nr
Match: gi|659112822|ref|XP_008456327.1| (PREDICTED: molybdenum cofactor sulfurase isoform X12 [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 5.5e-30
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MDAAKEEFLKEFGRDYGYPGGPKTIDEIRATEFKRLGGMAYLDHAAATLYSELQMEAIFK 60
          MDAAKEEFL+EFGRDYGYPGGPKTIDEIRA EFKRLGGMAYLDHA ATLYSELQME+IFK
Sbjct: 1  MDAAKEEFLREFGRDYGYPGGPKTIDEIRAIEFKRLGGMAYLDHAGATLYSELQMESIFK 60

Query: 61 DLTSNIYGNP 71
          DLT+N+YGNP
Sbjct: 61 DLTANVYGNP 70

[Close]

BLAST of Cla013470 vs. NCBI nr
Match: gi|659112816|ref|XP_008456324.1| (PREDICTED: molybdenum cofactor sulfurase isoform X9 [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 5.5e-30
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MDAAKEEFLKEFGRDYGYPGGPKTIDEIRATEFKRLGGMAYLDHAAATLYSELQMEAIFK 60
          MDAAKEEFL+EFGRDYGYPGGPKTIDEIRA EFKRLGGMAYLDHA ATLYSELQME+IFK
Sbjct: 1  MDAAKEEFLREFGRDYGYPGGPKTIDEIRAIEFKRLGGMAYLDHAGATLYSELQMESIFK 60

Query: 61 DLTSNIYGNP 71
          DLT+N+YGNP
Sbjct: 61 DLTANVYGNP 70

The following BLAST results are available for this feature:

BLAST of Cla013470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MOCOS_ORYSJ	2.6e-24	71.43	Molybdenum cofactor sulfurase OS=Oryza sativa subsp. japonica GN=MCSU3 PE=2 SV=2	[more]
MOCOS_SOLLC	3.2e-22	70.00	Molybdenum cofactor sulfurase OS=Solanum lycopersicum GN=FLACCA PE=2 SV=1	[more]
MOCOS_ARATH	1.0e-20	74.24	Molybdenum cofactor sulfurase OS=Arabidopsis thaliana GN=ABA3 PE=1 SV=1	[more]
MOCOS_HUMAN	2.2e-10	56.36	Molybdenum cofactor sulfurase OS=Homo sapiens GN=MOCOS PE=1 SV=2	[more]
MOCOS_BOVIN	4.1e-09	52.73	Molybdenum cofactor sulfurase OS=Bos taurus GN=MOCOS PE=2 SV=3	[more]

BLAST of Cla013470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KD86_CUCSA	5.0e-30	91.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G139140 PE=4 SV=1	[more]
M5WM28_PRUPE	2.8e-25	78.57	Molybdenum cofactor sulfurase OS=Prunus persica GN=PRUPE_ppa001477mg PE=3 SV=1	[more]
A0A103YJF2_CYNCS	4.8e-25	76.71	Molybdenum cofactor sulfurase OS=Cynara cardunculus var. scolymus GN=Ccrd_011351...	[more]
A0A0B5A169_9FABA	1.1e-24	77.14	Molybdenum cofactor sulfurase OS=Ammopiptanthus nanus PE=2 SV=1	[more]
A0A0J8BKH1_BETVU	1.2e-23	78.87	Molybdenum cofactor sulfurase OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g219130 ...	[more]

BLAST of Cla013470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112820\|ref\|XP_008456326.1\|	5.5e-30	91.43	PREDICTED: molybdenum cofactor sulfurase isoform X11 [Cucumis melo]	[more]
gi\|659112829\|ref\|XP_008456331.1\|	5.5e-30	91.43	PREDICTED: molybdenum cofactor sulfurase isoform X15 [Cucumis melo]	[more]
gi\|659112824\|ref\|XP_008456328.1\|	5.5e-30	91.43	PREDICTED: molybdenum cofactor sulfurase isoform X13 [Cucumis melo]	[more]
gi\|659112822\|ref\|XP_008456327.1\|	5.5e-30	91.43	PREDICTED: molybdenum cofactor sulfurase isoform X12 [Cucumis melo]	[more]
gi\|659112816\|ref\|XP_008456324.1\|	5.5e-30	91.43	PREDICTED: molybdenum cofactor sulfurase isoform X9 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla013470	Cla013470	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla013470	Cla013470.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla013470.1.cds2	Cla013470.1.cds2	CDS
Cla013470.1.cds1	Cla013470.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14237	MOLYBDOPTERIN COFACTOR SULFURASE MOSC	coord: 1..70 score: 1.2
None	No IPR available	PANTHER	PTHR14237:SF19	MOLYBDENUM COFACTOR SULFURASE	coord: 1..70 score: 1.2