Cla013233.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla013233
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 13343477 .. 13344085 (+)
Sequence length	609

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCCAACAACCCATTTCCTCCAAAAGCCCTAAACCTATTGTCTCATCCTCAAGGCATGGTAGTCGAAATCTGCCCACTACCTCCACCACACCTGAACCCCTCGCCATTGTTCGCCCCAATAGTCTTGAGTTGGAAGCGACATCAGCCCCATCTCTGCCACGCTCCAGGGACCTGTCTGAAGCTCAAGAGGTGGGAAGGAATGACGAGTCCACCGTCTTCGGAGATATTGAAGACACCATCGATGAAGAAGGCGATGACTGGTTGGACGGGTTGGTCGACCAGAGGATGAAAAATGAGCCGTGTAGGTCAGTCCCTGCAGTGAGTGGTCTTGAAGAGTCGGACTCCGATGAAAGACCTGTTGGAACGGTAATAGCGGCTGTGGAAAAGAAGAAGTCTGCCACGAAAAGGAAAATCAGGCCAATAAGGGCCAGGGAAGAAGAAGTCGAAGAAGATGTACCTTCGCTAAGAAGGAAAAATGAAAAAGTAAAGGATGCGGGGACATCCGAGGCTATCGCATCATCTTTTGCCGCATCATCTGTTGAGCGGTTAACAGCGAGGGCGGGAGAGAAGTCCAAGAAGCTGAAAGACAACATAAAAAAATGA

mRNA sequence

ATGGCTTCCCAACAACCCATTTCCTCCAAAAGCCCTAAACCTATTGTCTCATCCTCAAGGCATGGTAGTCGAAATCTGCCCACTACCTCCACCACACCTGAACCCCTCGCCATTGTTCGCCCCAATAGTCTTGAGTTGGAAGCGACATCAGCCCCATCTCTGCCACGCTCCAGGGACCTGTCTGAAGCTCAAGAGGTGGGAAGGAATGACGAGTCCACCGTCTTCGGAGATATTGAAGACACCATCGATGAAGAAGGCGATGACTGGTTGGACGGGTTGGTCGACCAGAGGATGAAAAATGAGCCGTGTAGGTCAGTCCCTGCAGTGAGTGGTCTTGAAGAGTCGGACTCCGATGAAAGACCTGTTGGAACGGTAATAGCGGCTGTGGAAAAGAAGAAGTCTGCCACGAAAAGGAAAATCAGGCCAATAAGGGCCAGGGAAGAAGAAGTCGAAGAAGATGTACCTTCGCTAAGAAGGAAAAATGAAAAAGTAAAGGATGCGGGGACATCCGAGGCTATCGCATCATCTTTTGCCGCATCATCTGTTGAGCGGTTAACAGCGAGGGCGGGAGAGAAGTCCAAGAAGCTGAAAGACAACATAAAAAAATGA

Coding sequence (CDS)

ATGGCTTCCCAACAACCCATTTCCTCCAAAAGCCCTAAACCTATTGTCTCATCCTCAAGGCATGGTAGTCGAAATCTGCCCACTACCTCCACCACACCTGAACCCCTCGCCATTGTTCGCCCCAATAGTCTTGAGTTGGAAGCGACATCAGCCCCATCTCTGCCACGCTCCAGGGACCTGTCTGAAGCTCAAGAGGTGGGAAGGAATGACGAGTCCACCGTCTTCGGAGATATTGAAGACACCATCGATGAAGAAGGCGATGACTGGTTGGACGGGTTGGTCGACCAGAGGATGAAAAATGAGCCGTGTAGGTCAGTCCCTGCAGTGAGTGGTCTTGAAGAGTCGGACTCCGATGAAAGACCTGTTGGAACGGTAATAGCGGCTGTGGAAAAGAAGAAGTCTGCCACGAAAAGGAAAATCAGGCCAATAAGGGCCAGGGAAGAAGAAGTCGAAGAAGATGTACCTTCGCTAAGAAGGAAAAATGAAAAAGTAAAGGATGCGGGGACATCCGAGGCTATCGCATCATCTTTTGCCGCATCATCTGTTGAGCGGTTAACAGCGAGGGCGGGAGAGAAGTCCAAGAAGCTGAAAGACAACATAAAAAAATGA

Protein sequence

MASQQPISSKSPKPIVSSSRHGSRNLPTTSTTPEPLAIVRPNSLELEATSAPSLPRSRDLSEAQEVGRNDESTVFGDIEDTIDEEGDDWLDGLVDQRMKNEPCRSVPAVSGLEESDSDERPVGTVIAAVEKKKSATKRKIRPIRAREEEVEEDVPSLRRKNEKVKDAGTSEAIASSFAASSVERLTARAGEKSKKLKDNIKK

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla013233	Cla013233	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla013233	Cla013233.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla013233.1.cds1	Cla013233.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 147..167 scor