Cla011681.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla011681
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Exosome complex component RRP42 (AHRD V1 **-- EXOS7_HUMAN); contains Interpro domain(s) IPR001247 Exoribonuclease, phosphorolytic domain 1
Location	Chr4 : 6127775 .. 6132037 (-)
Sequence length	870

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGCCTTTCTACTGGAGAGAAGCTTTTCATACAAGGTGGTATTGCTCAGGATCTTCGCACTGATGGTCGAGGGAGACTTACTTATCGACCCATCTCTGTAGAAACTGATGTGATCTCTCAGGTATAATCAAAACAGGGTAGTAATTATGCTTGCTTTGGTTCTTCTTGCCCTTTATGTGTTTTAATCCCAAAATGCTCTTATGTCTAGGCAAATGGTTCAGCAAGGGTCAGAATGGGTGGTACTGAAGTTATTGCTACAGTGAAGGTATAAAATGTTTGAGCTTCTTTCTGTTCGAATTATGCTATTCACTACATTTTAACCGAGTGTCGTGCTCTTGGTTCTGCTGCAAAAGATTGGAACTCCTGTTTTTTTGTGTTGTTTTTTTGTTTTTTTTCCCTTTGAGAACCTTCAAACGTTTATTTGGTATGATGATGATTACTTATATATGTTGAAGTGCAGGCTGAACTTGGAAGGCCTAATCCAATGCAGCCTGACAAAGGGAAGGTTTCAATCTCTGTTGATTGCAGCCCAATTGCGGAGCCAGCATTTGAGGTGTGGTAACTTGCAAACTTCTTTTTTTTTTTTTTAAATACATTTTGTTCATCCATGTGTTGTAGAATTGTCAGTGAATGGTTTGGTTTAAAAAATGGTGTTTTGTTGGAAGCAATCAGAATTTCATTTTATGTTGGGGAATAGGAGGTTGGGCATCAACAGCTAGATTTGTTGAGAAAATGAAATCGATAGAAATATAATATTGCAGAAGCAATAATCAAAATCCGAATCTTTGTTATACAAAGAGAACAAAATGGAAAATGAGTAAGTAGAACCTACTAGATAAATAAACTTCTAACTGAAGTAGAAACAATTGGCGATGCAAAGAACGCGATACACAAAATGACACTGAAAATGTGATACAAGCATTACATGGAAGCCTCACCCTTTTATAGGTACAAAACCGAACCTAACTAATACCACTTACAAAATTTAAAGTAGAAAATCAAACTTAAATGAAAGCTTAAAAAGAACAAAAAAAATAAAAAAAATAAAAAAAAATAAAAAAAACAAAAACAAAAAGAAAAGGAAATGTTAGCTCTAACTTTAAAGAAATAACTTAAGACATTAATCTGAAAATTAAATATAACAATTAAGTCAGAAACTTAAAAAACACAACTAAAATTTAATTAGGAAACATCTCAAATCTCAACAGTTTTTAAGATTTAAACATGGCAAAAGTGCAAACCAACATACCTTGTAACCGGAAGCTTCTTAACAACTGCATAGTTTTCTTTCTTAGTATATGATCAACTTGTCATAATCATTCCTTCAAATTTCAACTTTTCATATTAAATTGAAAACCCATTTCTTTCTTTCAACCATGTAGCATCAGTGATAACATGCCTAATGTAGGGGCCTCTTCACCCTATCATTTAATCAAATTTGAATGAACAAATTAAATAAGGGAAAAAAACTAGGGGCTACTGTAGAACTTGAATCAATGTTTAGGTACTAAAACGATATTCTAATAGAAACTGTTATAAACGTTTGTCATGTACAAGAGAAATTGTTTAAACGGGTATCCATTAGAATAGTGCATGGTGGAGGAGCCTCTTCACCCTTTCCCCTACGTGAAAAGGGTCATTTGTTGTGATTGACTTATTTTTGGGCTATTTTATGGGGCCATTGGCGTGAAAGAACAATAGGCTTTTTAGGGGGATTGAGAAGTCTTAGGTCAATTGTAGTCCTTTGTTAGATTTCAAACCTCTCTCTAGGTTTCCATTTGTAAATCCACTCTAGGTTTCCATTTCTTTCATTTGTTCTCAATGAAAGTAGTGGCTCTTCATCAAACTGGTATCCATTGCATAAACTTGTGTAGTTCTCTTTTTTTTTTTTTCTTCTTCTTCTTCTTCTTCTCTGTAGGTACTTTTTGCTATGCTTGTAATATTTGGGTTTTCATTGAATATAGGGTCGGGGTGGTGAAGAGTTGTCAACAGAACTCTCGGTTGCTCTTGAGCGGTGTCTCAGAGTGGTTCAGGTTTGATGACTCCCGACTAGAAAACCAGATCAATCATAGTTGCTTCCCTTGTTTGGATCAGTAACTTTTGCACTTGATGACAAGTGTGCTTTTGTTGCCTCAGGGGCTGGGATTGACCGTTCATCTCTCGTAGTTGTGGAAGGGAAGCTTTGCTGGGATCTCTATGTTGAGGGCCTGGTAATAAGTTCAGAGGGCAATCTTCTAGACGCCCTTGGTGCTGCCATTAAGGTATATTTTCATTGTTGAGTTTTGTCTACTCCTGTGTCATTTGCAACTCTAATAACCAGATTTTGTACTTATTGTTTATTCTTTACAAGGCAGCATGCCCATATAACCTTTGCTGCTTTAACCAAAGCACTGTCCAATAAACATCAATATATTTTTGATTTCTGATTGAGTAAAGTCAAGTTTGGCAACCGAAGCAAGTCTCTTAAGCCTATATTTGTCTCTTTCAATTTTGAAATATTTGCTTCAAAACTTACTCTATTGATGCTCTAATGAAATTTCTTCTTTACTAATATCATTGTTGATTTTATCACTGTAGTTTTAACTTCTATTGTTGTTTGGTATTATTTACCGACCTCAATTTCACCACACTAGTTTTATATTTCCATTTCATAATTAGGAAATGTTAGCATTCGTTGATGCCATGGAGGGTTGTGCAAAAACCAAAAAAAAAAAACTGATGAACCGAACTGGACCGGATAACGCGGTTTGGTCCGATTTTTTTGAAGAATAGAGAACAAACGGTTCACGGAAGAGCAAAACCGAATGGTTCGATTCGGTCATCGGTTCATTACCCTAAAACATTGCAGAAAACCAAACCGAACTGTAGTAAAAACAAGCTGGGACATAAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGATAAGAGCGAAACGCTCTCGCTCTTTCTCTCGTTCTTCCTCTCGCTTTAATTGCACCTTCGGTTAAAAACCGAATCGAACCGGCCTGAACTGAATTAGGTTGGTTCGGTTCAAGAACCCAAACCGATGTGAACCGGTTTTCAGTGGTTCTTCTTCATTGTGAACCGATAACTTCGGTTTGGTTCATGGTTCGTCCCAAAACCGGACCGAACCGAACCGAACCGTGCACACCCCTAATGCCATGCTAGATTAAGATATTGAAGACATGGGTTTATTCAGATCTACCTTTTCTAAAATAATAATAAAAAAATTTGGCACAGACATGATTAGAAACTTTGGACACTTCTATTAGATGATTTTAATTATATTTGAATTTATCATTTTGATTTTTCAGCAGTTTCACTCCCTCTTTTTGCTGGTTATCTAATATATGGACTCTTTGCTTAGTTGTTCTCAAAGGACTTCTGCTATTATTGGTTGTAGTTGGCCGTATTAGTTGTAAAGTAATTGCTTTATTTTGTTATATTTTGTTTTATTGTATTTTGAGTGTTGATCTCTTCTCATTTTATCAATGAAAAGTCTTGTTTCTTTTTTTTTTAAAAAAATTAATCTTTGCTAGGCCATTACATATCAAAGGGGTAAAATGGGGAAATTTTCTAATGACAGGTAATGGGATGTGTTGATATGGTCCTGAGGGGAAGGACTAACGAGTGTGGTTATATGGGTAGGCAGGGTTTGTTTGGGGAGTTCTTTTTTTTTGTGGTTATTTTGGGATTTGCGTCTATTGTTGCTGTGTTTGTTATTGATTTCTTTCTACTTTCCTTGAAGAAGTATATCTCGTGTTTTTCGATTAATATAAAACTTCAACCTTAATACTTTACTAAATCTTTTAGTACTCACAGTTACTATGAACAAGATGAAACTAATAAAACTTGAAACTGTTCTTCCCAAGGCTGCTTTGAGCAATACAGGCATCCCGAAAGTCCACGTTGCTGCAGAAGCATCAGCCAACGAACAACCTGAAGTCGATATAAGTGATGAAGAATTTCTACAGTTCGACACATCTGGGGTTCCAGCCATAGTTACATTGACAAAGGTGGGTAAGCACTACATCGTTGATGCTACTTTGGAAGAAGAATCTCAAATGAGCTCTGCAGTCTCCATATCCATTAACAGGCATGGTCACATTTGCGGGTTGACAAAACGCGGGGGTGCAGGGGTCGATCCAAGCATAATCCTCGATATGATATCTGTTGGCAAACATGTCAGCGAGGAGTTACTAAACAAGTTGGACTCAGAGATTGTGGCTGCTGAAGCTGATGAAGAAGAATGA

mRNA sequence

ATGGTGGGCCTTTCTACTGGAGAGAAGCTTTTCATACAAGGTGGTATTGCTCAGGATCTTCGCACTGATGGTCGAGGGAGACTTACTTATCGACCCATCTCTGTAGAAACTGATGTGATCTCTCAGGCAAATGGTTCAGCAAGGGTCAGAATGGGTGGTACTGAAGTTATTGCTACAGTGAAGGCTGAACTTGGAAGGCCTAATCCAATGCAGCCTGACAAAGGGAAGGTTTCAATCTCTGTTGATTGCAGCCCAATTGCGGAGCCAGCATTTGAGGGTCGGGGTGGTGAAGAGTTGTCAACAGAACTCTCGGTTGCTCTTGAGCGGTGTCTCAGAGTGGTTCAGTGTGCTTTTGTTGCCTCAGGGGCTGGGATTGACCGTTCATCTCTCGTAGTTGTGGAAGGGAAGCTTTGCTGGGATCTCTATGTTGAGGGCCTGGTAATAAGTTCAGAGGGCAATCTTCTAGACGCCCTTGGTGCTGCCATTAAGGCTGCTTTGAGCAATACAGGCATCCCGAAAGTCCACGTTGCTGCAGAAGCATCAGCCAACGAACAACCTGAAGTCGATATAAGTGATGAAGAATTTCTACAGTTCGACACATCTGGGGTTCCAGCCATAGTTACATTGACAAAGGTGGGTAAGCACTACATCGTTGATGCTACTTTGGAAGAAGAATCTCAAATGAGCTCTGCAGTCTCCATATCCATTAACAGGCATGGTCACATTTGCGGGTTGACAAAACGCGGGGGTGCAGGGGTCGATCCAAGCATAATCCTCGATATGATATCTGTTGGCAAACATGTCAGCGAGGAGTTACTAAACAAGTTGGACTCAGAGATTGTGGCTGCTGAAGCTGATGAAGAAGAATGA

Coding sequence (CDS)

ATGGTGGGCCTTTCTACTGGAGAGAAGCTTTTCATACAAGGTGGTATTGCTCAGGATCTTCGCACTGATGGTCGAGGGAGACTTACTTATCGACCCATCTCTGTAGAAACTGATGTGATCTCTCAGGCAAATGGTTCAGCAAGGGTCAGAATGGGTGGTACTGAAGTTATTGCTACAGTGAAGGCTGAACTTGGAAGGCCTAATCCAATGCAGCCTGACAAAGGGAAGGTTTCAATCTCTGTTGATTGCAGCCCAATTGCGGAGCCAGCATTTGAGGGTCGGGGTGGTGAAGAGTTGTCAACAGAACTCTCGGTTGCTCTTGAGCGGTGTCTCAGAGTGGTTCAGTGTGCTTTTGTTGCCTCAGGGGCTGGGATTGACCGTTCATCTCTCGTAGTTGTGGAAGGGAAGCTTTGCTGGGATCTCTATGTTGAGGGCCTGGTAATAAGTTCAGAGGGCAATCTTCTAGACGCCCTTGGTGCTGCCATTAAGGCTGCTTTGAGCAATACAGGCATCCCGAAAGTCCACGTTGCTGCAGAAGCATCAGCCAACGAACAACCTGAAGTCGATATAAGTGATGAAGAATTTCTACAGTTCGACACATCTGGGGTTCCAGCCATAGTTACATTGACAAAGGTGGGTAAGCACTACATCGTTGATGCTACTTTGGAAGAAGAATCTCAAATGAGCTCTGCAGTCTCCATATCCATTAACAGGCATGGTCACATTTGCGGGTTGACAAAACGCGGGGGTGCAGGGGTCGATCCAAGCATAATCCTCGATATGATATCTGTTGGCAAACATGTCAGCGAGGAGTTACTAAACAAGTTGGACTCAGAGATTGTGGCTGCTGAAGCTGATGAAGAAGAATGA

Protein sequence

MVGLSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLRVVQCAFVASGAGIDRSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQPEVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICGLTKRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE

Homology

[Close]

BLAST of Cla011681 vs. Swiss-Prot
Match: EXOS7_HUMAN (Exosome complex component RRP42 OS=Homo sapiens GN=EXOSC7 PE=1 SV=3)

HSP 1 Score: 204.1 bits (518), Expect = 2.0e-51
Identity = 109/284 (38.38%), Postives = 165/284 (58.10%), Query Frame = 1


Query: 2   VGLSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 61
           V LS  EK++I  G+ +DLR DGRG   YR + VETDV+S  +GSARV++G T+++  VK
Sbjct: 4   VTLSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVK 63

Query: 62  AELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLRVVQCAFVAS 121
           AE+G P   +P++G +   VDCS  A P FEGRGG++L TE++  L R           +
Sbjct: 64  AEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFN--------N 123

Query: 122 GAGIDRSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEAS 181
            + +D  +L +   + CW LYV+ L++   GNL DA+  A+KAAL NT IP+V V  +  
Sbjct: 124 KSSVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEE 183

Query: 182 ANEQPEVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGH 241
            ++  E+     + ++     VP IVTL K+G  ++VDATL+EE+   +++ +S+   G 
Sbjct: 184 GSKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGV 243

Query: 242 ICGLTKRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEA 286
           +  + K G   +DP  I +M+  GK V + L   L S +   E+
Sbjct: 244 VTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQSVVHKEES 279

[Close]

BLAST of Cla011681 vs. Swiss-Prot
Match: EXOS7_MOUSE (Exosome complex exonuclease RRP42 OS=Mus musculus GN=Exosc7 PE=1 SV=2)

HSP 1 Score: 199.5 bits (506), Expect = 4.9e-50
Identity = 108/277 (38.99%), Postives = 160/277 (57.76%), Query Frame = 1


Query: 2   VGLSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 61
           V LS  EK++I  G+ +DLR DGRG   YR + VETDV+S  +GSARV++G T+++  VK
Sbjct: 4   VALSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVK 63

Query: 62  AELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLRVVQCAFVAS 121
           AE+G P   +P++G +   VDCS  A P FEGRGG++L TE++  L R           +
Sbjct: 64  AEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRIFN--------N 123

Query: 122 GAGIDRSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEAS 181
            + +D  SL +   + CW LYV+ L++   GNL DA+  A+KAAL NT IP+V V  +  
Sbjct: 124 KSSVDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEE 183

Query: 182 ANEQPEVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGH 241
             +  E+     + ++     VP IVTL K+G  ++VDATL+EE+   +++ +S+   G 
Sbjct: 184 GAKDIELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGV 243

Query: 242 ICGLTKRGGAGVDPSIILDMISVGKHVSEELLNKLDS 279
           +  + K G   +DP  I +M+   K V + L   L S
Sbjct: 244 VTCMRKVGKGSLDPESIFEMMESSKRVGKVLHVSLQS 272

[Close]

BLAST of Cla011681 vs. Swiss-Prot
Match: EXOS7_DICDI (Putative exosome complex exonuclease RRP42 OS=Dictyostelium discoideum GN=exosc7 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.0e-43
Identity = 112/319 (35.11%), Postives = 160/319 (50.16%), Query Frame = 1


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M  +S  E LFIQ G+  ++R+DGR R+ YR  ++ET  I  ANGSARV++  TEV+  V
Sbjct: 1   MQKISPSESLFIQQGVENNIRSDGRNRVDYRNFAIETGEIIHANGSARVKLSQTEVLVGV 60

Query: 61  KAELGR------PNPMQPDKGK-VSISVDCSPIAEPAFEGRGGEELSTELSVALERC--- 120
           KAE+         N  Q D  K +  SV+C P A P FEG+G E L+ ELS  LER    
Sbjct: 61  KAEITHIQSEITSNLQQSDTSKRLVFSVNCCPSASPEFEGKGSEFLNIELSKQLERLYSH 120

Query: 121 ------LRVVQCAFVASGAGIDRSSLV-----------------------VVEGKLCWDL 180
                 L++       +    ++                           +V GK  W L
Sbjct: 121 PNVIKNLKLTNPIISNNNNNNNKIKEAEEGKEKEKEGDIITNSGDDNCFSIVSGKYYWTL 180

Query: 181 YVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQPEVDISDEEFLQFDTS 240
           YV+ +V+ S+GNL DAL  A ++AL NT IP+V            EV    E+ L     
Sbjct: 181 YVDAIVLDSDGNLFDALSIACRSALQNTRIPRVKAIQGEYEEITFEVSDDPEDTLSLSID 240

Query: 241 GVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICGLTKRGGAGVDPSIILDM 281
            VP  VTLTK+G  +++D TL+EE  M++ +++ +N   +IC + K G  G+DP+ I  M
Sbjct: 241 NVPICVTLTKIGNQFVIDTTLQEELCMNARLTVGVNSLANICSIQKGGIDGLDPTTINQM 300

[Close]

BLAST of Cla011681 vs. Swiss-Prot
Match: RRP42_METKA (Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rrp42 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.0e-34
Identity = 88/261 (33.72%), Postives = 143/261 (54.79%), Query Frame = 1


Query: 21  RTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNPMQPDKGKVSIS 80
           R DGR    +RPI V   VIS+ANGSA VR+G T+++  VK E+GRP P  P++G ++++
Sbjct: 23  RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVN 82

Query: 81  VDCSPIAEPAFEGRGGEELSTELSVALERCLRVVQCAFVASGAGIDRSSLVVVEGKLCWD 140
            +  P+A+P+FE    +E + ELS  ++R +R  +         ID   L + EG+ CW 
Sbjct: 83  AELVPLADPSFEPGPPDENAIELSRVVDRGIRESEM--------IDLEELCIEEGEHCWV 142

Query: 141 LYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQPEVDISDEEFLQFDT 200
            +V+  V+  +GNL DA      +ALS T +PK  V  +       EV++ +E+      
Sbjct: 143 TFVDIHVLDHDGNLFDASMIGSVSALSITEVPKAEVVDD-------EVEVMEEDTEPLAI 202

Query: 201 SGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICGLTKRGGAGVDPSIIL- 260
           +  P  VT+ KVG++ +VD  LEEE  M + +++++   G +C + K G  G  P  +L 
Sbjct: 203 NDFPISVTIAKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQK-GELGDFPEHLLE 262

Query: 261 DMISVGKHVSEELLNKLDSEI 281
           D I +    +EE+   + +++
Sbjct: 263 DAIDLATKKAEEVRRTVKAQL 267

[Close]

BLAST of Cla011681 vs. Swiss-Prot
Match: RRP42_METTH (Exosome complex component Rrp42 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=rrp42 PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.5e-34
Identity = 86/260 (33.08%), Postives = 132/260 (50.77%), Query Frame = 1


Query: 21  RTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNPMQPDKGKVSIS 80
           R DGR    +R IS+ET VIS+A GS+RV++G T++I  VK ++G P P  P+ G +  +
Sbjct: 25  RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTN 84

Query: 81  VDCSPIAEPAFEGRGGEELSTELSVALERCLRVVQCAFVASGAGIDRSSLVVVEGKLCWD 140
            +  P+A P FE    +E S ELS  ++RC+R            ID   L ++EG   W 
Sbjct: 85  SELLPMASPTFEPGPPDERSVELSRVVDRCIR--------ESRMIDLEKLCIIEGSKVWM 144

Query: 141 LYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQPEVDISDEEFLQFDT 200
           L+++  +I  +GNL DA   A  AAL +T IP   V       E  EV I+ E+      
Sbjct: 145 LFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEV-------EDGEVVINREKMQPLPV 204

Query: 201 SGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICGLTKRGGAGVDPSIILD 260
           +    + T  K+G   ++D +LEEE  +++ +SI +   G IC + K G   +    +L 
Sbjct: 205 NRKALMCTFAKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGEGPLTRDDVLK 264

Query: 261 MISVGKHVSEELLNKLDSEI 281
            +S+      +L+  LD  +
Sbjct: 265 AVSIAVEKVPQLIEYLDKSM 269

[Close]

BLAST of Cla011681 vs. TrEMBL
Match: A0A0A0LU91_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004330 PE=4 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 2.7e-143
Identity = 267/289 (92.39%), Postives = 275/289 (95.16%), Query Frame = 1


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLSTGEKLFIQ GIAQDLRTDGRGRLTYRPIS+ETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLRVVQCAFVA 120
           KAELGRPNPMQPDKGKVSISVDCSP AEPAFEGRGGEELSTELS+ALERCL   +     
Sbjct: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSG--- 120

Query: 121 SGAGIDRSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEA 180
           SGAGID SSL+VVEGKLCWDLY+EGLV+SSEGNLLDALGAAIKAALSNTGIPKVHVAAEA
Sbjct: 121 SGAGIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEA 180

Query: 181 SANEQPEVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHG 240
             NEQPEVD+SDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISI+RHG
Sbjct: 181 LDNEQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHG 240

Query: 241 HICGLTKRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 290
           HICGLTKRGG GVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE
Sbjct: 241 HICGLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286

[Close]

BLAST of Cla011681 vs. TrEMBL
Match: A0A061FPE8_THECC (3'-5'-exoribonuclease family protein isoform 2 OS=Theobroma cacao GN=TCM_043261 PE=4 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 6.2e-124
Identity = 230/289 (79.58%), Postives = 261/289 (90.31%), Query Frame = 1


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEK FIQGGIAQDLR+DGR RLTYRPI VET VI QA+GSAR+R+G T+VIA+V
Sbjct: 1   MVGLSVGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIPQAHGSARIRLGATDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLRVVQCAFVA 120
           KAELG+P+ +QPDKGK++I VDCSP A P FEGRGGEELSTELSVAL+RCL   +     
Sbjct: 61  KAELGKPSALQPDKGKIAIYVDCSPTAAPMFEGRGGEELSTELSVALQRCLLGGKSG--- 120

Query: 121 SGAGIDRSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEA 180
           SG+GID SSLV+VEGK+CWDLY++GLVISS+GNLLDALGAAIKAALSNTGIPKV+VA+E 
Sbjct: 121 SGSGIDPSSLVIVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPKVNVASET 180

Query: 181 SANEQPEVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHG 240
           S +EQPEV+ISDEEFLQFDTSG+P IVTLTKVG+HYIVDAT EEESQ+SSA+SISINR G
Sbjct: 181 SGDEQPEVNISDEEFLQFDTSGIPVIVTLTKVGRHYIVDATSEEESQISSAISISINRKG 240

Query: 241 HICGLTKRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 290
           HICGLTKRGGAG+DPSIILDMISV KHVSE+L+NKLDSEI AAEA+EEE
Sbjct: 241 HICGLTKRGGAGLDPSIILDMISVAKHVSEQLINKLDSEIAAAEANEEE 286

[Close]

BLAST of Cla011681 vs. TrEMBL
Match: A0A061FPF2_THECC (3'-5'-exoribonuclease family protein isoform 7 OS=Theobroma cacao GN=TCM_043261 PE=4 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 8.0e-124
Identity = 229/289 (79.24%), Postives = 262/289 (90.66%), Query Frame = 1


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEK FIQGGIAQDLR+DGR RLTYRPI VET VI QA+GSAR+R+G T+VIA+V
Sbjct: 1   MVGLSVGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIPQAHGSARIRLGATDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLRVVQCAFVA 120
           KAELG+P+ +QPDKGK++I VDCSP A P FEGRGGEELSTELSVAL+RCL   +    +
Sbjct: 61  KAELGKPSALQPDKGKIAIYVDCSPTAAPMFEGRGGEELSTELSVALQRCLLGGKSG--S 120

Query: 121 SGAGIDRSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEA 180
           +G+GID SSLV+VEGK+CWDLY++GLVISS+GNLLDALGAAIKAALSNTGIPKV+VA+E 
Sbjct: 121 AGSGIDPSSLVIVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPKVNVASET 180

Query: 181 SANEQPEVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHG 240
           S +EQPEV+ISDEEFLQFDTSG+P IVTLTKVG+HYIVDAT EEESQ+SSA+SISINR G
Sbjct: 181 SGDEQPEVNISDEEFLQFDTSGIPVIVTLTKVGRHYIVDATSEEESQISSAISISINRKG 240

Query: 241 HICGLTKRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 290
           HICGLTKRGGAG+DPSIILDMISV KHVSE+L+NKLDSEI AAEA+EEE
Sbjct: 241 HICGLTKRGGAGLDPSIILDMISVAKHVSEQLINKLDSEIAAAEANEEE 287

[Close]

BLAST of Cla011681 vs. TrEMBL
Match: A0A059BFR0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02573 PE=4 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 1.4e-123
Identity = 230/289 (79.58%), Postives = 260/289 (89.97%), Query Frame = 1


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLS GEKLF+QGGIAQDLR+DGR RLTYRPI VET VI QANGSARVRMGGT+VIA+V
Sbjct: 1   MNGLSLGEKLFVQGGIAQDLRSDGRKRLTYRPIYVETGVIPQANGSARVRMGGTDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLRVVQCAFVA 120
           KAE+GRP+P+QP+KGKVSI VDCSP A P FEGRG EELSTELSVAL+RCL   +     
Sbjct: 61  KAEIGRPSPLQPNKGKVSIYVDCSPTAAPVFEGRGAEELSTELSVALQRCLLGGKSG--- 120

Query: 121 SGAGIDRSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEA 180
           +GAGID SSL+VVEGK+CWDLY++GLV+SS+GNLLDALGAAIKAALSNTGIP+VHVAAEA
Sbjct: 121 AGAGIDLSSLIVVEGKVCWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVHVAAEA 180

Query: 181 SANEQPEVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHG 240
           S  +QPE+DISDEEFLQFDTSGVP IVTLTKVG+HYIVDATL+EES+MSSA+S+SINR G
Sbjct: 181 SGEDQPELDISDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLDEESEMSSALSVSINRKG 240

Query: 241 HICGLTKRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 290
            ICGLTKRGGAG+DPS+ILDMISV KHVSE+L ++LDSEI AAEA EEE
Sbjct: 241 LICGLTKRGGAGLDPSVILDMISVAKHVSEQLTDRLDSEISAAEAVEEE 286

[Close]

BLAST of Cla011681 vs. TrEMBL
Match: A0A061FNX2_THECC (3'-5'-exoribonuclease family protein isoform 5 OS=Theobroma cacao GN=TCM_043261 PE=4 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 1.8e-123
Identity = 229/289 (79.24%), Postives = 259/289 (89.62%), Query Frame = 1


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEK FIQGGIAQDLR+DGR RLTYRPI VET VI QA+GSAR+R+G T+VIA+V
Sbjct: 1   MVGLSVGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIPQAHGSARIRLGATDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLRVVQCAFVA 120
           KAELG+P+ +QPDKGK++I VDCSP A P FEGRGGEELSTELSVAL+RCL         
Sbjct: 61  KAELGKPSALQPDKGKIAIYVDCSPTAAPMFEGRGGEELSTELSVALQRCLL-------- 120

Query: 121 SGAGIDRSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEA 180
            G+GID SSLV+VEGK+CWDLY++GLVISS+GNLLDALGAAIKAALSNTGIPKV+VA+E 
Sbjct: 121 -GSGIDPSSLVIVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPKVNVASET 180

Query: 181 SANEQPEVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHG 240
           S +EQPEV+ISDEEFLQFDTSG+P IVTLTKVG+HYIVDAT EEESQ+SSA+SISINR G
Sbjct: 181 SGDEQPEVNISDEEFLQFDTSGIPVIVTLTKVGRHYIVDATSEEESQISSAISISINRKG 240

Query: 241 HICGLTKRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 290
           HICGLTKRGGAG+DPSIILDMISV KHVSE+L+NKLDSEI AAEA+EEE
Sbjct: 241 HICGLTKRGGAGLDPSIILDMISVAKHVSEQLINKLDSEIAAAEANEEE 280

[Close]

BLAST of Cla011681 vs. NCBI nr
Match: gi|778655595|ref|XP_004151651.2| (PREDICTED: exosome complex component RRP42 [Cucumis sativus])

HSP 1 Score: 516.2 bits (1328), Expect = 3.8e-143
Identity = 267/289 (92.39%), Postives = 275/289 (95.16%), Query Frame = 1


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLSTGEKLFIQ GIAQDLRTDGRGRLTYRPIS+ETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLRVVQCAFVA 120
           KAELGRPNPMQPDKGKVSISVDCSP AEPAFEGRGGEELSTELS+ALERCL   +     
Sbjct: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSG--- 120

Query: 121 SGAGIDRSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEA 180
           SGAGID SSL+VVEGKLCWDLY+EGLV+SSEGNLLDALGAAIKAALSNTGIPKVHVAAEA
Sbjct: 121 SGAGIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEA 180

Query: 181 SANEQPEVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHG 240
             NEQPEVD+SDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISI+RHG
Sbjct: 181 LDNEQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHG 240

Query: 241 HICGLTKRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 290
           HICGLTKRGG GVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE
Sbjct: 241 HICGLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286

[Close]

BLAST of Cla011681 vs. NCBI nr
Match: gi|659081317|ref|XP_008441268.1| (PREDICTED: exosome complex component RRP42-like [Cucumis melo])

HSP 1 Score: 510.8 bits (1314), Expect = 1.6e-141
Identity = 263/289 (91.00%), Postives = 275/289 (95.16%), Query Frame = 1


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLSTGEKLFIQ GIAQDLRTDGRGRLTYRPIS+ETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLRVVQCAFVA 120
           KAELGRPNPMQ +KGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCL   +     
Sbjct: 61  KAELGRPNPMQSNKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSG--- 120

Query: 121 SGAGIDRSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEA 180
           SGAGID SSL+VVEGKLCWDLY+EGLV+SSEGNLLDALGAAIKAALSNTGIPKVH+AAEA
Sbjct: 121 SGAGIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHIAAEA 180

Query: 181 SANEQPEVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHG 240
           S NEQPEVD+SDEEF+QF+TSGVPAIVTLTKVGKHYI+DATLEEESQMSSAVSISINRHG
Sbjct: 181 SGNEQPEVDVSDEEFIQFETSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHG 240

Query: 241 HICGLTKRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 290
           HICGLTKRGG GVDPSIILDMISVGK+VSEELLNKLDSEIVAAE DEEE
Sbjct: 241 HICGLTKRGGVGVDPSIILDMISVGKNVSEELLNKLDSEIVAAEVDEEE 286

[Close]

BLAST of Cla011681 vs. NCBI nr
Match: gi|1009164949|ref|XP_015900774.1| (PREDICTED: exosome complex component RRP42 [Ziziphus jujuba])

HSP 1 Score: 451.8 bits (1161), Expect = 8.8e-124
Identity = 232/289 (80.28%), Postives = 258/289 (89.27%), Query Frame = 1


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEK FIQGGIAQDLR+DGR RLTYRPI VET VI QANGSARVR+G T+VIA+V
Sbjct: 1   MVGLSLGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIPQANGSARVRLGATDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLRVVQCAFVA 120
           KAELG+P+P+QPDKGKV+I VDCSP A P FEGRGGEELS ELSVAL+RCL   +     
Sbjct: 61  KAELGKPHPLQPDKGKVAIYVDCSPTAAPIFEGRGGEELSMELSVALQRCLLGGKSG--- 120

Query: 121 SGAGIDRSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEA 180
           +GAGI  SSLVVVEGK+CWDLY++GLV+SS+GNLLDALGAAIKAALSNTGIP+V+VAA A
Sbjct: 121 AGAGISLSSLVVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVNVAAGA 180

Query: 181 SANEQPEVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHG 240
           S +E+PEVD+SDEEFLQFDTSGVP I+TLTKVG+HYIVDAT EEESQMSSAVSIS+NR G
Sbjct: 181 SGDEEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHYIVDATTEEESQMSSAVSISVNRQG 240

Query: 241 HICGLTKRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 290
           HICGLTKRGGAGVDPSIILDMISV KHVSE+LLN+LDSEI AAEA E E
Sbjct: 241 HICGLTKRGGAGVDPSIILDMISVAKHVSEQLLNQLDSEIAAAEARENE 286

[Close]

BLAST of Cla011681 vs. NCBI nr
Match: gi|590565438|ref|XP_007009948.1| (3'-5'-exoribonuclease family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 451.8 bits (1161), Expect = 8.8e-124
Identity = 230/289 (79.58%), Postives = 261/289 (90.31%), Query Frame = 1


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEK FIQGGIAQDLR+DGR RLTYRPI VET VI QA+GSAR+R+G T+VIA+V
Sbjct: 1   MVGLSVGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIPQAHGSARIRLGATDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLRVVQCAFVA 120
           KAELG+P+ +QPDKGK++I VDCSP A P FEGRGGEELSTELSVAL+RCL   +     
Sbjct: 61  KAELGKPSALQPDKGKIAIYVDCSPTAAPMFEGRGGEELSTELSVALQRCLLGGKSG--- 120

Query: 121 SGAGIDRSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEA 180
           SG+GID SSLV+VEGK+CWDLY++GLVISS+GNLLDALGAAIKAALSNTGIPKV+VA+E 
Sbjct: 121 SGSGIDPSSLVIVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPKVNVASET 180

Query: 181 SANEQPEVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHG 240
           S +EQPEV+ISDEEFLQFDTSG+P IVTLTKVG+HYIVDAT EEESQ+SSA+SISINR G
Sbjct: 181 SGDEQPEVNISDEEFLQFDTSGIPVIVTLTKVGRHYIVDATSEEESQISSAISISINRKG 240

Query: 241 HICGLTKRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 290
           HICGLTKRGGAG+DPSIILDMISV KHVSE+L+NKLDSEI AAEA+EEE
Sbjct: 241 HICGLTKRGGAGLDPSIILDMISVAKHVSEQLINKLDSEIAAAEANEEE 286

[Close]

BLAST of Cla011681 vs. NCBI nr
Match: gi|590565455|ref|XP_007009953.1| (3'-5'-exoribonuclease family protein isoform 7 [Theobroma cacao])

HSP 1 Score: 451.4 bits (1160), Expect = 1.2e-123
Identity = 229/289 (79.24%), Postives = 262/289 (90.66%), Query Frame = 1


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEK FIQGGIAQDLR+DGR RLTYRPI VET VI QA+GSAR+R+G T+VIA+V
Sbjct: 1   MVGLSVGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIPQAHGSARIRLGATDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLRVVQCAFVA 120
           KAELG+P+ +QPDKGK++I VDCSP A P FEGRGGEELSTELSVAL+RCL   +    +
Sbjct: 61  KAELGKPSALQPDKGKIAIYVDCSPTAAPMFEGRGGEELSTELSVALQRCLLGGKSG--S 120

Query: 121 SGAGIDRSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEA 180
           +G+GID SSLV+VEGK+CWDLY++GLVISS+GNLLDALGAAIKAALSNTGIPKV+VA+E 
Sbjct: 121 AGSGIDPSSLVIVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPKVNVASET 180

Query: 181 SANEQPEVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHG 240
           S +EQPEV+ISDEEFLQFDTSG+P IVTLTKVG+HYIVDAT EEESQ+SSA+SISINR G
Sbjct: 181 SGDEQPEVNISDEEFLQFDTSGIPVIVTLTKVGRHYIVDATSEEESQISSAISISINRKG 240

Query: 241 HICGLTKRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 290
           HICGLTKRGGAG+DPSIILDMISV KHVSE+L+NKLDSEI AAEA+EEE
Sbjct: 241 HICGLTKRGGAGLDPSIILDMISVAKHVSEQLINKLDSEIAAAEANEEE 287

The following BLAST results are available for this feature:

BLAST of Cla011681 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EXOS7_HUMAN	2.0e-51	38.38	Exosome complex component RRP42 OS=Homo sapiens GN=EXOSC7 PE=1 SV=3	[more]
EXOS7_MOUSE	4.9e-50	38.99	Exosome complex exonuclease RRP42 OS=Mus musculus GN=Exosc7 PE=1 SV=2	[more]
EXOS7_DICDI	2.0e-43	35.11	Putative exosome complex exonuclease RRP42 OS=Dictyostelium discoideum GN=exosc7...	[more]
RRP42_METKA	5.0e-34	33.72	Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324...	[more]
RRP42_METTH	6.5e-34	33.08	Exosome complex component Rrp42 OS=Methanothermobacter thermautotrophicus (strai...	[more]

BLAST of Cla011681 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU91_CUCSA	2.7e-143	92.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004330 PE=4 SV=1	[more]
A0A061FPE8_THECC	6.2e-124	79.58	3'-5'-exoribonuclease family protein isoform 2 OS=Theobroma cacao GN=TCM_043261 ...	[more]
A0A061FPF2_THECC	8.0e-124	79.24	3'-5'-exoribonuclease family protein isoform 7 OS=Theobroma cacao GN=TCM_043261 ...	[more]
A0A059BFR0_EUCGR	1.4e-123	79.58	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02573 PE=4 SV=1	[more]
A0A061FNX2_THECC	1.8e-123	79.24	3'-5'-exoribonuclease family protein isoform 5 OS=Theobroma cacao GN=TCM_043261 ...	[more]

BLAST of Cla011681 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778655595\|ref\|XP_004151651.2\|	3.8e-143	92.39	PREDICTED: exosome complex component RRP42 [Cucumis sativus]	[more]
gi\|659081317\|ref\|XP_008441268.1\|	1.6e-141	91.00	PREDICTED: exosome complex component RRP42-like [Cucumis melo]	[more]
gi\|1009164949\|ref\|XP_015900774.1\|	8.8e-124	80.28	PREDICTED: exosome complex component RRP42 [Ziziphus jujuba]	[more]
gi\|590565438\|ref\|XP_007009948.1\|	8.8e-124	79.58	3'-5'-exoribonuclease family protein isoform 2 [Theobroma cacao]	[more]
gi\|590565455\|ref\|XP_007009953.1\|	1.2e-123	79.24	3'-5'-exoribonuclease family protein isoform 7 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001247	ExoRNase_PH_dom1
IPR015847	ExoRNase_PH_dom2
IPR020568	Ribosomal_S5_D2-typ_fold
IPR027408	PNPase/RNase_PH_dom_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000478	endonucleolytic cleavage involved in rRNA processing
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0001510	RNA methylation
cellular_component	GO:0005622	intracellular
molecular_function	GO:0004527	exonuclease activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla011681	Cla011681	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla011681	Cla011681.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla011681.1.cds6	Cla011681.1.cds6	CDS
Cla011681.1.cds5	Cla011681.1.cds5	CDS
Cla011681.1.cds4	Cla011681.1.cds4	CDS
Cla011681.1.cds3	Cla011681.1.cds3	CDS
Cla011681.1.cds2	Cla011681.1.cds2	CDS
Cla011681.1.cds1	Cla011681.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 30..172 score: 2.2
IPR015847	Exoribonuclease, phosphorolytic domain 2	PFAM	PF03725	RNase_PH_C	coord: 203..266 score: 3.
IPR015847	Exoribonuclease, phosphorolytic domain 2	unknown	SSF55666	Ribonuclease PH domain 2-like	coord: 199..282 score: 1.07
IPR020568	Ribosomal protein S5 domain 2-type fold	unknown	SSF54211	Ribosomal protein S5 domain 2-like	coord: 4..177 score: 1.21E-44coord: 212..226 score: 1.21
IPR027408	PNPase/RNase PH domain	GENE3D	G3DSA:3.30.230.70		coord: 12..279 score: 6.6
None	No IPR available	PANTHER	PTHR11097	EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN	coord: 1..289 score: 1.9E
None	No IPR available	PANTHER	PTHR11097:SF8	EXOSOME COMPLEX COMPONENT RRP42	coord: 1..289 score: 1.9E