Cla011619.1 (mRNA) Watermelon (97103) v1

NameCla011619
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr4 : 4236248 .. 4239374 (-)
Sequence length258
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCCTTGCATTCAAGAGTTAGAACGATGCGTTCAAGAAGCTCGGGAAGAGGAAATAGAGGAAAGGAAGAGCACTTATTCTTTGGCAAGAACAGGTGAGTAACACCTGCGTTTTACAAAATATAAATGAGTTCCTTATGAATCTGATTTTATGGGTTTTGAATGAATAAATGCATGCGTTTTACATGAAAACTTTGAGAATGCTGATTACTTGGTATGAGTTATAAAACGCATGGTAATTGATTGATACTTGTTTTCATGACTTTTCTGAAAAGCATGGTATTATATGATTTCAAGAAAGATTTGAAAATAAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGACTCGTAGAAGGCATTGAGGGCGGCCCGAATTCTAGTACCTATATGCACATAGAGGTATATACGACGCTGATGTGTTGAGATTACTCCACACAGCTAAGGAAAATCGACGTTGAGGAGCGTTGAGCATTGTTCCGCCTCAACTAAGGAAAAAGTATTTTAAAAGAATGAGATTTTTGAGTATTTACTCTAAAACGGATAAGCATGTTTTCACAATGGTATTTGAGTATAATTTAATATGATTTGAAGTGTTATATTTTATACGAGTTTGACCAGTTTTACAGTTTAAATATATTGTTTTCAGAAAACCGTTACTCACGGAGCTGTTAGCTCACTCTTTTTATATGTTTTCCATTTTCAGGTAGCATGACAGTTCTCGTTGCCGATCGAAGTCGAGGTTGGTCAAGAGTATGATAAGGGTATTACCGTCCTAGGAAGGGTTTATTGGTAAAGTGAGGTGAAAGCTGACCGTAGGTTATTTGACAGGGTAGTCGGTAACTGTTGTCCTCACACTCCATCTCGGGCTACGGGAGGATAGTTCGGGGTGGGGTGTGACACTAATTCTTGCTAGAAAAATTACTTTCGGCAGCTAGAAGTAAAGGCAAGGTGTTCAAAGCTGTCGGGTAAGCTTTGGTGGGGCTATGCGTGCAGTAGGCTTAGGTAGTGGCTGGAGTTGAGAATTTAATTGAGGTTATTTTGACAAGTTCTGAATGCCTAGAAGGCGGGCTGACACGACACTGTCAATGCAAGGGGGAGCAAGAGGCACACGACACAAACTAATTGACATTGAGACGCGTGTACCTTGCCTCTTTTGAGGTTATTTCAATAGTAAGTGTGCGGGAGTTGCCACCCACAAGGGGCAGTGTGGGCGAGGCAGTGGTTGGGCATGCAGGGCAGTGTGTTGTGCGCGGTTTTCCACCCATTTGAGGTTAGGATGGGTGGGTTGCATGCTGCAGGGCTGTTGGACACGCCTAAGGGCAGTTTTCCACTTTTGGGTATTTTGGCTAATTTTCACTTGTCGGTGAGCCTTTTTTAGCTAAAATAACTTAAAATATGTCATGAAATGAATTTTAAGGATATTGACAAAGGAATTAATTTATTCCAAACTAAGAAGAGCTAGAGGAAGCATATAACCCATTAAGAGCCCAAAACAAGTTGTGAGTGACTTAAATTCATTTAAAATGATTTATTCTCTTAATAGTTTTTGAATGCTTGATTTATTCGTAGAATATGAGATTTCTGGCATAAGTTGAATTTCGTAAAGTATGCGTTTCTTAATATGATGATTTTTTAGCATGTTCTATTTCTAATATCGAACTTTGTGAAAATACATGTTGTTTGAGAAATACTCTAAAATTTTGAGAAATTGTTTACTTCTTGTTTATAAAATGATTTAGCATGCTTTATTTTCAAAAGATGATCCCCAGTGCCGAAGGACTGAGAGAAGGCATATGGCATATGGGCAGCCTGAAATTATAATTCCTATGTGCACATAGAGGGAAATTCGACGTTGTTGTGTTGAGATCACTCCACACAACTAAGGTTATTCAACGTTGGACGTGTTGAGATTACTCCACCCTAACTAAGGTTGTTTCGACATTGGGCGTGTTGAGATTACTCCACCCTAACTAAGGTTGTTTCGACATTGGGCGTGTTGAGATTACTCCACCCTAACTGACGTTGTTTTCGACCTTGGGCGTGTTAATCTACTCCACCCTGACTAAGGTTTTTTCGATATTGGATAGCATTGAGCTTACTCCGTCTCGACTATGGGAAAATATTTCAAAAATACACAAATGTTTCTAAGCTTCTGAAAGCTTTATTATTTGGTTATCAAACACGATATCGTTGAGCTTTTAAGTCAAGCATAGTTTTATAAACTTGTCACTCATTAGGCAACCTAGCTCATATTTTCAAATATTTTCAACTTTCCAGGTAGCGAGCGAAACCAAGGTGCTTAGCCTACTCGACAAACTCGCCTGGGTCTACTTCTTAGTTTGAGAATTGTAAATATTTGTACTTAGACCTGACATTGTACATATTGGGATCTAAGGAGTGGTAGTTATGGGTAAAACTCTGATGTTATTTTTATAAAGTATCATTTGATATTATTTATAGTCTGGATGTAGATTATAATTATGTAATCGAATGCTTGGTAAGGATTTGAGGAAAGATAAGCTGACAGTAGATGTCGTAAAGGATCGATGTCTGCTGTCGTCACATCTGTTTTTTTGTTAAGAGGATAACTCGGGAAGGGATGTGACAAGTTGGTATTAGAGCATAAGGTTTTGAGAGTGGGGAAACTTTTTATGAAAAACCAGAGAGTGAGGAAAAATAAAATTTTGCTTCTTAGGAATTGAGTCTAGACTTAGATTGGAAATAAAATATTTGAATGTTTCGAAGATACATAGTTATGTTTCTGAACTATTATGTCATATAGGAGATGTCTCGAAGAAGCAGACCTCAACAGCAACAAGAAGACGGAACTCAAAATGCTACCTTTCCTTCCCCAGTAGAAGAGGAAGGAGAATCAAGTCATCCAATGATGACGAGTGCGGTAGAAGCACAAGTATTTCAAAATTTTGCTTAGCGAATAGCTAA

mRNA sequence

ATGGAGCCTTGCATTCAAGAGTTAGAACGATGCGTTCAAGAAGCTCGGGAAGAGGAAATAGAGGAAAGGAAGAGCACTTATTCTTTGGCAAGAACAGGAGATGTCTCGAAGAAGCAGACCTCAACAGCAACAAGAAGACGGAACTCAAAATGCTACCTTTCCTTCCCCAGTAGAAGAGGAAGGAGAATCAAGTCATCCAATGATGACGAGTGCGGTAGAAGCACAAGTATTTCAAAATTTTGCTTAGCGAATAGCTAA

Coding sequence (CDS)

ATGGAGCCTTGCATTCAAGAGTTAGAACGATGCGTTCAAGAAGCTCGGGAAGAGGAAATAGAGGAAAGGAAGAGCACTTATTCTTTGGCAAGAACAGGAGATGTCTCGAAGAAGCAGACCTCAACAGCAACAAGAAGACGGAACTCAAAATGCTACCTTTCCTTCCCCAGTAGAAGAGGAAGGAGAATCAAGTCATCCAATGATGACGAGTGCGGTAGAAGCACAAGTATTTCAAAATTTTGCTTAGCGAATAGCTAA

Protein sequence

MEPCIQELERCVQEAREEEIEERKSTYSLARTGDVSKKQTSTATRRRNSKCYLSFPSRRGRRIKSSNDDECGRSTSISKFCLANS
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla011619Cla011619gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla011619Cla011619.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla011619.1.cds2Cla011619.1.cds2CDS
Cla011619.1.cds1Cla011619.1.cds1CDS


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 5..25
scor