Cla009527.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009527
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr3 : 15349499 .. 15351216 (+)
Sequence length	1509

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATTTTGTAACGAGTTCAAAGGAAACATCAGCAAAGGACCGGTACTGTGCTCCACTCAAACATCAAAATCAACCGCAATTCTGGGTTAGGAAAAACAGAGAAGTCTTCAAGGAAGACTTTAACAACCTATGGGTTCTCACCAGGTTATTTGCCTCTGATGATTGGAAGGAAATTGCCAAATTCTTAGAGGTCTTCTACAATGTGAAAGTTAAAATCAACCCCCTTTTCGATGACAAAGCCCTATTCCGAGTAGTCCAAGGGAAGATAGAAGATATAATTGAAGCCCCCGACAAATGGTCTAATTATAGAAAATTTCATTTATTATTTGAAAATGGAATTCATTACTTCACAGTAGACCCTCTGTTTTAAGAAGCTTTGGTGGATGGATAGTAATCAAGAACTTATCGCTGGAGTATTGGAGCAGAGAAACATTTGAAGCAATTGGACAACACTTTGGAGGATTGGAGGAGATAAGTATTGAAACACTGAATTTGTTAGACGTTTCAGAGACTAAAATTAAAGTTAGAAAGAATGTTTATGGTTTTATTCCAGCTACAATCGAAATTAACAATGAATTTAGAGGTTCTATCCATTTACTATTTGGAGACATCATACCAATGAAAGATTCAAGTTCCATTATCACGGAATTTATTGGGAGTGATTTCGAAAACCCCATTGACCAAGTACGGTTGAGCAAAGTCGAAGAAGATGAGGTTAGAGTCTTTTCTCCCTCAAAATTGGCGCTGCTTAGTTCGAAACCTGACCAGACCCAACCAGAGCAGGAGGAGAAGTCACTGGAAATATCGGTCGGGAGTCCATCAGTCGGAAAATGGTCGAAGTCGACAGCAAATGGCCTCGAAGGAAAAAGCATTAATGAGAAGGCGGCAAAATTAAATTGGTGTGAGGAAACCGAAGAGGCAGCCGTAGGAAGTTCAATAGGTGTGTTGAAATCGATTCGGCCTATAGAAGTTATGAAGAAAGAGAAGAGGAAAGAGAGGGTGTTTGGCCGAATTAATGAGAATATTAAAAGCATCCAGACCCCTGACATTCCATCTGGGGATTTCCTTCGGTCAGGTGGGCCCACCGGCTTCGAAGTCATCCAAAAAATTCGAAAAGTCCCAAACGTTCTTTTGACAGTAGCAGAAGAATCCGAAAAGTCACCCCCAAATAGCATGAAGTCCAATTGGGAAGAGGTTCCCTTTCAGACATTGCTGCCCTATCATCAGCTCCCTCGAGCTCGCGTGAATGCCTTTCCTCAGCAGTCTCCAGCACACACGATTTCCTCGGTCAAGAGCCCTTTCTTCCCAGCCGTTAGGAGGAGTTCAAATCTCTTCAAACCCTCCCCAAAACACTTTAGCAGAGGAAAAACATCGTTCCTCAACCTTTGGTCAGCATTGACAAATCCAGATATACTCGAAGTTAGTTGTGCAAACTCTCAAGTCCCCCAACAAATTCGTGACAGGTCAGTACTCCCCCTCTCTTCATCACAAATATTCCATCAATCAGAAATTCTAATTCCGGGATCAAATATTCTCTTCTTGCGAGGCTCCCCAAGCTCTTACCGTCCCAAGCCTAATAAGATTCAAGACTCAGAAGAGGAATCACTCATCAGCATAAGTAGTGATGAATTAAATGAGCCGGAAGAAGATGAGAACCATTTAAGTTTGGAATTGGATGAATCCATCGGTGATGATCTAAATAAACTTTTCTAG

mRNA sequence

ATGGAGAATTTTGTAACGAGTTCAAAGGAAACATCAGCAAAGGACCGGTACTGTGCTCCACTCAAACATCAAAATCAACCGCAATTCTGGGTTAGGAAAAACAGAGAAGTCTTCAAGGAAGACTTTAACAACCTATGGGTTCTCACCAGTAGACCCTCTGTTTTAAGAAGCTTTGGTGGATGGATAGTAATCAAGAACTTATCGCTGGAGTATTGGAGCAGAGAAACATTTGAAGCAATTGGACAACACTTTGGAGGATTGGAGGAGATAAGTATTGAAACACTGAATTTGTTAGACGTTTCAGAGACTAAAATTAAAGTTAGAAAGAATGTTTATGGTTTTATTCCAGCTACAATCGAAATTAACAATGAATTTAGAGGTTCTATCCATTTACTATTTGGAGACATCATACCAATGAAAGATTCAAGTTCCATTATCACGGAATTTATTGGGAGTGATTTCGAAAACCCCATTGACCAAGTACGGTTGAGCAAAGTCGAAGAAGATGAGGTTAGAGTCTTTTCTCCCTCAAAATTGGCGCTGCTTAGTTCGAAACCTGACCAGACCCAACCAGAGCAGGAGGAGAAGTCACTGGAAATATCGGTCGGGAGTCCATCAGTCGGAAAATGGTCGAAGTCGACAGCAAATGGCCTCGAAGGAAAAAGCATTAATGAGAAGGCGGCAAAATTAAATTGGTGTGAGGAAACCGAAGAGGCAGCCGTAGGAAGTTCAATAGGTGTGTTGAAATCGATTCGGCCTATAGAAGTTATGAAGAAAGAGAAGAGGAAAGAGAGGGTGTTTGGCCGAATTAATGAGAATATTAAAAGCATCCAGACCCCTGACATTCCATCTGGGGATTTCCTTCGGTCAGGTGGGCCCACCGGCTTCGAAGTCATCCAAAAAATTCGAAAAGTCCCAAACGTTCTTTTGACAGTAGCAGAAGAATCCGAAAAGTCACCCCCAAATAGCATGAAGTCCAATTGGGAAGAGGTTCCCTTTCAGACATTGCTGCCCTATCATCAGCTCCCTCGAGCTCGCGTGAATGCCTTTCCTCAGCAGTCTCCAGCACACACGATTTCCTCGGTCAAGAGCCCTTTCTTCCCAGCCGTTAGGAGGAGTTCAAATCTCTTCAAACCCTCCCCAAAACACTTTAGCAGAGGAAAAACATCGTTCCTCAACCTTTGGTCAGCATTGACAAATCCAGATATACTCGAAGTTAGTTGTGCAAACTCTCAAGTCCCCCAACAAATTCGTGACAGGTCAGTACTCCCCCTCTCTTCATCACAAATATTCCATCAATCAGAAATTCTAATTCCGGGATCAAATATTCTCTTCTTGCGAGGCTCCCCAAGCTCTTACCGTCCCAAGCCTAATAAGATTCAAGACTCAGAAGAGGAATCACTCATCAGCATAAGTAGTGATGAATTAAATGAGCCGGAAGAAGATGAGAACCATTTAAGTTTGGAATTGGATGAATCCATCGGTGATGATCTAAATAAACTTTTCTAG

Coding sequence (CDS)

ATGGAGAATTTTGTAACGAGTTCAAAGGAAACATCAGCAAAGGACCGGTACTGTGCTCCACTCAAACATCAAAATCAACCGCAATTCTGGGTTAGGAAAAACAGAGAAGTCTTCAAGGAAGACTTTAACAACCTATGGGTTCTCACCAGTAGACCCTCTGTTTTAAGAAGCTTTGGTGGATGGATAGTAATCAAGAACTTATCGCTGGAGTATTGGAGCAGAGAAACATTTGAAGCAATTGGACAACACTTTGGAGGATTGGAGGAGATAAGTATTGAAACACTGAATTTGTTAGACGTTTCAGAGACTAAAATTAAAGTTAGAAAGAATGTTTATGGTTTTATTCCAGCTACAATCGAAATTAACAATGAATTTAGAGGTTCTATCCATTTACTATTTGGAGACATCATACCAATGAAAGATTCAAGTTCCATTATCACGGAATTTATTGGGAGTGATTTCGAAAACCCCATTGACCAAGTACGGTTGAGCAAAGTCGAAGAAGATGAGGTTAGAGTCTTTTCTCCCTCAAAATTGGCGCTGCTTAGTTCGAAACCTGACCAGACCCAACCAGAGCAGGAGGAGAAGTCACTGGAAATATCGGTCGGGAGTCCATCAGTCGGAAAATGGTCGAAGTCGACAGCAAATGGCCTCGAAGGAAAAAGCATTAATGAGAAGGCGGCAAAATTAAATTGGTGTGAGGAAACCGAAGAGGCAGCCGTAGGAAGTTCAATAGGTGTGTTGAAATCGATTCGGCCTATAGAAGTTATGAAGAAAGAGAAGAGGAAAGAGAGGGTGTTTGGCCGAATTAATGAGAATATTAAAAGCATCCAGACCCCTGACATTCCATCTGGGGATTTCCTTCGGTCAGGTGGGCCCACCGGCTTCGAAGTCATCCAAAAAATTCGAAAAGTCCCAAACGTTCTTTTGACAGTAGCAGAAGAATCCGAAAAGTCACCCCCAAATAGCATGAAGTCCAATTGGGAAGAGGTTCCCTTTCAGACATTGCTGCCCTATCATCAGCTCCCTCGAGCTCGCGTGAATGCCTTTCCTCAGCAGTCTCCAGCACACACGATTTCCTCGGTCAAGAGCCCTTTCTTCCCAGCCGTTAGGAGGAGTTCAAATCTCTTCAAACCCTCCCCAAAACACTTTAGCAGAGGAAAAACATCGTTCCTCAACCTTTGGTCAGCATTGACAAATCCAGATATACTCGAAGTTAGTTGTGCAAACTCTCAAGTCCCCCAACAAATTCGTGACAGGTCAGTACTCCCCCTCTCTTCATCACAAATATTCCATCAATCAGAAATTCTAATTCCGGGATCAAATATTCTCTTCTTGCGAGGCTCCCCAAGCTCTTACCGTCCCAAGCCTAATAAGATTCAAGACTCAGAAGAGGAATCACTCATCAGCATAAGTAGTGATGAATTAAATGAGCCGGAAGAAGATGAGAACCATTTAAGTTTGGAATTGGATGAATCCATCGGTGATGATCTAAATAAACTTTTCTAG

Protein sequence

MENFVTSSKETSAKDRYCAPLKHQNQPQFWVRKNREVFKEDFNNLWVLTSRPSVLRSFGGWIVIKNLSLEYWSRETFEAIGQHFGGLEEISIETLNLLDVSETKIKVRKNVYGFIPATIEINNEFRGSIHLLFGDIIPMKDSSSIITEFIGSDFENPIDQVRLSKVEEDEVRVFSPSKLALLSSKPDQTQPEQEEKSLEISVGSPSVGKWSKSTANGLEGKSINEKAAKLNWCEETEEAAVGSSIGVLKSIRPIEVMKKEKRKERVFGRINENIKSIQTPDIPSGDFLRSGGPTGFEVIQKIRKVPNVLLTVAEESEKSPPNSMKSNWEEVPFQTLLPYHQLPRARVNAFPQQSPAHTISSVKSPFFPAVRRSSNLFKPSPKHFSRGKTSFLNLWSALTNPDILEVSCANSQVPQQIRDRSVLPLSSSQIFHQSEILIPGSNILFLRGSPSSYRPKPNKIQDSEEESLISISSDELNEPEEDENHLSLELDESIGDDLNKLF

Homology

[Close]

BLAST of Cla009527 vs. TrEMBL
Match: A0A0A0KHK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G408260 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 9.7e-08
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 1


Query: 371 RRSSNLFKPSPKHFSRGKTSFLNLWSALTNPDILEVSCANSQVPQQIRDRSV-LPLSSSQ 430
           +RSSNLFK   KHF+R KTSF N W+ +TNPD+LE SC   QVP   ++RS  LPL +  
Sbjct: 127 QRSSNLFKSFHKHFARKKTSFYNSWTKITNPDVLEASCVKIQVPGLEQNRSASLPLLNKP 186

[Close]

BLAST of Cla009527 vs. TrEMBL
Match: E5GB30_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-06
Identity = 29/70 (41.43%), Postives = 43/70 (61.43%), Query Frame = 1


Query: 52  PSVLRSFGGWIVIKNLSLEYWSRETFEAIGQHFGGLEEISIETLNLLDVSETKIKVRKNV 111
           P  + S+GGWI ++ + L  W+ E+F  IG   GG  E++ ET  L D+ E  I+V+ N 
Sbjct: 208 PKFVPSYGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRELTDLIEASIRVKDNY 267

Query: 112 YGFIPATIEI 122
            GFIPA I++
Sbjct: 268 SGFIPAFIKL 277

[Close]

BLAST of Cla009527 vs. NCBI nr
Match: gi|700192663|gb|KGN47867.1| (hypothetical protein Csa_6G408260 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-07
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 1


Query: 371 RRSSNLFKPSPKHFSRGKTSFLNLWSALTNPDILEVSCANSQVPQQIRDRSV-LPLSSSQ 430
           +RSSNLFK   KHF+R KTSF N W+ +TNPD+LE SC   QVP   ++RS  LPL +  
Sbjct: 127 QRSSNLFKSFHKHFARKKTSFYNSWTKITNPDVLEASCVKIQVPGLEQNRSASLPLLNKP 186

[Close]

BLAST of Cla009527 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 3.1e-07
Identity = 27/70 (38.57%), Postives = 46/70 (65.71%), Query Frame = 1


Query: 52  PSVLRSFGGWIVIKNLSLEYWSRETFEAIGQHFGGLEEISIETLNLLDVSETKIKVRKNV 111
           P ++ S+GGW + + + L  W+ +TF+ IG+  GGL +++ ET +  ++ E KIK+R N 
Sbjct: 281 PKLIPSYGGWTIFRGIPLHLWNMKTFQQIGKACGGLIKVAEETRSAKNLIEAKIKIRYNY 340

Query: 112 YGFIPATIEI 122
            GF+PA + I
Sbjct: 341 SGFLPANVRI 350

[Close]

BLAST of Cla009527 vs. NCBI nr
Match: gi|307135793|gb|ADN33672.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 62.4 bits (150), Expect = 2.6e-06
Identity = 29/70 (41.43%), Postives = 43/70 (61.43%), Query Frame = 1


Query: 52  PSVLRSFGGWIVIKNLSLEYWSRETFEAIGQHFGGLEEISIETLNLLDVSETKIKVRKNV 111
           P  + S+GGWI ++ + L  W+ E+F  IG   GG  E++ ET  L D+ E  I+V+ N 
Sbjct: 208 PKFVPSYGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRELTDLIEASIRVKDNY 267

Query: 112 YGFIPATIEI 122
            GFIPA I++
Sbjct: 268 SGFIPAFIKL 277

The following BLAST results are available for this feature:

BLAST of Cla009527 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHK4_CUCSA	9.7e-08	55.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G408260 PE=4 SV=1	[more]
E5GB30_CUCME	1.8e-06	41.43	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Cla009527 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192663\|gb\|KGN47867.1\|	1.4e-07	55.74	hypothetical protein Csa_6G408260 [Cucumis sativus]	[more]
gi\|659071590\|ref\|XP_008460776.1\|	3.1e-07	38.57	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me...	[more]
gi\|307135793\|gb\|ADN33672.1\|	2.6e-06	41.43	hypothetical protein [Cucumis melo subsp. melo]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla009527	Cla009527	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla009527	Cla009527.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla009527.1.cds1	Cla009527.1.cds1	CDS
Cla009527.1.cds2	Cla009527.1.cds2	CDS