Cla008873.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla008873
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr10 : 1382792 .. 1383130 (+)
Sequence length	339

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTGCTTGAAGAAGACGCTAACCAAACTCACTGCATTTGTCCGCCGCTGCCTCGTTCGCCGGCGACGTTCTCGACGGCCGAGATCATTCGTTTCCGACGATCGGATGATAGAGATACGGATTGTCTTCGAAGAGCAGAGGAGAATCGCTGAGAGTGCTGCGAATTCAAGCAGCGGAAGGTGGGAAGTGGATGTCGATCAGCGAGCGGAGATTTTCATTGATGATTTCCGCCGTCAATTGAGGTTAGAGAGACAGATTTCTTTGCATTATAGAGTTGAAACAGAGTATGAAGAGAGATGGCCGCCACCGCCGCCGATTTCGCCGCCGATTTGA

mRNA sequence

ATGGCTTCTTGCTTGAAGAAGACGCTAACCAAACTCACTGCATTTGTCCGCCGCTGCCTCGTTCGCCGGCGACGTTCTCGACGGCCGAGATCATTCGTTTCCGACGATCGGATGATAGAGATACGGATTGTCTTCGAAGAGCAGAGGAGAATCGCTGAGAGTGCTGCGAATTCAAGCAGCGGAAGGTGGGAAGTGGATGTCGATCAGCGAGCGGAGATTTTCATTGATGATTTCCGCCGTCAATTGAGGTTAGAGAGACAGATTTCTTTGCATTATAGAGTTGAAACAGAGTATGAAGAGAGATGGCCGCCACCGCCGCCGATTTCGCCGCCGATTTGA

Coding sequence (CDS)

ATGGCTTCTTGCTTGAAGAAGACGCTAACCAAACTCACTGCATTTGTCCGCCGCTGCCTCGTTCGCCGGCGACGTTCTCGACGGCCGAGATCATTCGTTTCCGACGATCGGATGATAGAGATACGGATTGTCTTCGAAGAGCAGAGGAGAATCGCTGAGAGTGCTGCGAATTCAAGCAGCGGAAGGTGGGAAGTGGATGTCGATCAGCGAGCGGAGATTTTCATTGATGATTTCCGCCGTCAATTGAGGTTAGAGAGACAGATTTCTTTGCATTATAGAGTTGAAACAGAGTATGAAGAGAGATGGCCGCCACCGCCGCCGATTTCGCCGCCGATTTGA

Protein sequence

MASCLKKTLTKLTAFVRRCLVRRRRSRRPRSFVSDDRMIEIRIVFEEQRRIAESAANSSSGRWEVDVDQRAEIFIDDFRRQLRLERQISLHYRVETEYEERWPPPPPISPPI

Homology

[Close]

BLAST of Cla008873 vs. TrEMBL
Match: A0A0A0L4Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.0e-21
Identity = 70/118 (59.32%), Postives = 84/118 (71.19%), Query Frame = 1


Query: 1   MASCLKKTLTKLTAFVRRCLVRRRRSRRPRSFVSDD-RMIEIRIVFEEQRRIAES----- 60
           MAS L+K L KL A +R CL+ R+RSRR  SF SDD + + IRIV E+Q RIAES     
Sbjct: 8   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 67

Query: 61  ---AANSSSGRWEVDVDQRAEIFIDDFRRQLRLERQISL---HYRV---ETEYEERWP 104
              A++S  G +E DVDQRAEIFI++FRRQLRLERQISL   +YRV   ETEYE+R P
Sbjct: 68  LERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 125

[Close]

BLAST of Cla008873 vs. TrEMBL
Match: A0A0A0L6A3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.3e-15
Identity = 59/121 (48.76%), Postives = 72/121 (59.50%), Query Frame = 1


Query: 1   MASCLKKTLTKLTAFVRRCLVRRRRS-RRPRSFVSDDRMIEIRIVFEEQRRIAESAANSS 60
           MA  L++TL KL AF+R CL+ RRRS  R R+ + DD+                S+   S
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQTAR-------NLERDSSSRYES 60

Query: 61  SGRWEVDVDQRAEIFIDDFRRQLRLERQISLHYRV--------ETEYEERWPPPPPISPP 113
              +E DVD RAEIFI++FRRQLRLERQISL  R+        ET+YEE  PPPPP  PP
Sbjct: 61  CEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEILPPPPP-PPP 113

[Close]

BLAST of Cla008873 vs. NCBI nr
Match: gi|778688278|ref|XP_011652707.1| (PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 7.1e-21
Identity = 70/118 (59.32%), Postives = 84/118 (71.19%), Query Frame = 1


Query: 1   MASCLKKTLTKLTAFVRRCLVRRRRSRRPRSFVSDD-RMIEIRIVFEEQRRIAES----- 60
           MAS L+K L KL A +R CL+ R+RSRR  SF SDD + + IRIV E+Q RIAES     
Sbjct: 1   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 60

Query: 61  ---AANSSSGRWEVDVDQRAEIFIDDFRRQLRLERQISL---HYRV---ETEYEERWP 104
              A++S  G +E DVDQRAEIFI++FRRQLRLERQISL   +YRV   ETEYE+R P
Sbjct: 61  LERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 118

[Close]

BLAST of Cla008873 vs. NCBI nr
Match: gi|700200554|gb|KGN55687.1| (hypothetical protein Csa_3G004530 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 7.1e-21
Identity = 70/118 (59.32%), Postives = 84/118 (71.19%), Query Frame = 1


Query: 1   MASCLKKTLTKLTAFVRRCLVRRRRSRRPRSFVSDD-RMIEIRIVFEEQRRIAES----- 60
           MAS L+K L KL A +R CL+ R+RSRR  SF SDD + + IRIV E+Q RIAES     
Sbjct: 8   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 67

Query: 61  ---AANSSSGRWEVDVDQRAEIFIDDFRRQLRLERQISL---HYRV---ETEYEERWP 104
              A++S  G +E DVDQRAEIFI++FRRQLRLERQISL   +YRV   ETEYE+R P
Sbjct: 68  LERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 125

[Close]

BLAST of Cla008873 vs. NCBI nr
Match: gi|700200553|gb|KGN55686.1| (hypothetical protein Csa_3G004520 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 7.6e-15
Identity = 59/121 (48.76%), Postives = 72/121 (59.50%), Query Frame = 1


Query: 1   MASCLKKTLTKLTAFVRRCLVRRRRS-RRPRSFVSDDRMIEIRIVFEEQRRIAESAANSS 60
           MA  L++TL KL AF+R CL+ RRRS  R R+ + DD+                S+   S
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQTAR-------NLERDSSSRYES 60

Query: 61  SGRWEVDVDQRAEIFIDDFRRQLRLERQISLHYRV--------ETEYEERWPPPPPISPP 113
              +E DVD RAEIFI++FRRQLRLERQISL  R+        ET+YEE  PPPPP  PP
Sbjct: 61  CEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEILPPPPP-PPP 113

The following BLAST results are available for this feature:

BLAST of Cla008873 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4Z8_CUCSA	5.0e-21	59.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1	[more]
A0A0A0L6A3_CUCSA	5.3e-15	48.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1	[more]

BLAST of Cla008873 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688278\|ref\|XP_011652707.1\|	7.1e-21	59.32	PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus]	[more]
gi\|700200554\|gb\|KGN55687.1\|	7.1e-21	59.32	hypothetical protein Csa_3G004530 [Cucumis sativus]	[more]
gi\|700200553\|gb\|KGN55686.1\|	7.6e-15	48.76	hypothetical protein Csa_3G004520 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla008873	Cla008873	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla008873	Cla008873.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla008873.1.cds1	Cla008873.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 66..90 score: 7.