Cla008869.1 (mRNA) Watermelon (97103) v1

Overview
NameCla008869
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr10 : 1361806 .. 1362114 (+)
Sequence length309
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCACGCATAAACATCATGTTGAAGAAACTCACGCCATTTCCCTCTCTCCGCCTCTGCCTTGTCCGTCCCCGACGTTCCCGCCCACGCTCCCTCCGACGTTCCGACGACCGGAAGGTCAGGACACGGAGTTTCTTCGAGGCTCAGAGGAGAATCGCTCAAAATCCTTCTGTCACACAGCTTCAACCACCTGCTTCCACTTCAACCTATGGAAACCGTGAAGACGATGTCGATCAGCGAGCTCAGATTTACATCCATAAAGTTCGCAATCAATTGAGGTTACAACCAAAAATTTCTTTGCAATAG

mRNA sequence

ATGGCCTCACGCATAAACATCATGTTGAAGAAACTCACGCCATTTCCCTCTCTCCGCCTCTGCCTTGTCCGTCCCCGACGTTCCCGCCCACGCTCCCTCCGACGTTCCGACGACCGGAAGGTCAGGACACGGAGTTTCTTCGAGGCTCAGAGGAGAATCGCTCAAAATCCTTCTGTCACACAGCTTCAACCACCTGCTTCCACTTCAACCTATGGAAACCGTGAAGACGATGTCGATCAGCGAGCTCAGATTTACATCCATAAAGTTCGCAATCAATTGAGGTTACAACCAAAAATTTCTTTGCAATAG

Coding sequence (CDS)

ATGGCCTCACGCATAAACATCATGTTGAAGAAACTCACGCCATTTCCCTCTCTCCGCCTCTGCCTTGTCCGTCCCCGACGTTCCCGCCCACGCTCCCTCCGACGTTCCGACGACCGGAAGGTCAGGACACGGAGTTTCTTCGAGGCTCAGAGGAGAATCGCTCAAAATCCTTCTGTCACACAGCTTCAACCACCTGCTTCCACTTCAACCTATGGAAACCGTGAAGACGATGTCGATCAGCGAGCTCAGATTTACATCCATAAAGTTCGCAATCAATTGAGGTTACAACCAAAAATTTCTTTGCAATAG

Protein sequence

MASRINIMLKKLTPFPSLRLCLVRPRRSRPRSLRRSDDRKVRTRSFFEAQRRIAQNPSVTQLQPPASTSTYGNREDDVDQRAQIYIHKVRNQLRLQPKISLQ
Homology
[Close]
BLAST of Cla008869 vs. TrEMBL
Match: A0A0A0L4Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-11
Identity = 51/103 (49.51%), Postives = 65/103 (63.11%), Query Frame = 1 

Query: 1   MASRINIMLKKLTPFPSLRLCLVRPRRSRPR-SLRRSDDRKVRTRSFFEAQRRIAQNPSV 60
           MASR+   L KL     LRLCL+  +RSR   S    DD+KV  R   E Q RIA++  V
Sbjct: 8   MASRLQKALMKLKAV--LRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFV 67

Query: 61  TQLQPPASTSTYGNREDDVDQRAQIYIHKVRNQLRLQPKISLQ 103
            +L+  AS+S YG  E+DVDQRA+I+I   R QLRL+ +ISLQ
Sbjct: 68  RKLER-ASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQ 107

[Close]
BLAST of Cla008869 vs. NCBI nr
Match: gi|778688278|ref|XP_011652707.1| (PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 4.7e-11
Identity = 51/103 (49.51%), Postives = 65/103 (63.11%), Query Frame = 1 

Query: 1   MASRINIMLKKLTPFPSLRLCLVRPRRSRPR-SLRRSDDRKVRTRSFFEAQRRIAQNPSV 60
           MASR+   L KL     LRLCL+  +RSR   S    DD+KV  R   E Q RIA++  V
Sbjct: 1   MASRLQKALMKLKAV--LRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFV 60

Query: 61  TQLQPPASTSTYGNREDDVDQRAQIYIHKVRNQLRLQPKISLQ 103
            +L+  AS+S YG  E+DVDQRA+I+I   R QLRL+ +ISLQ
Sbjct: 61  RKLER-ASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQ 100

[Close]
BLAST of Cla008869 vs. NCBI nr
Match: gi|700200554|gb|KGN55687.1| (hypothetical protein Csa_3G004530 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 4.7e-11
Identity = 51/103 (49.51%), Postives = 65/103 (63.11%), Query Frame = 1 

Query: 1   MASRINIMLKKLTPFPSLRLCLVRPRRSRPR-SLRRSDDRKVRTRSFFEAQRRIAQNPSV 60
           MASR+   L KL     LRLCL+  +RSR   S    DD+KV  R   E Q RIA++  V
Sbjct: 8   MASRLQKALMKLKAV--LRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFV 67

Query: 61  TQLQPPASTSTYGNREDDVDQRAQIYIHKVRNQLRLQPKISLQ 103
            +L+  AS+S YG  E+DVDQRA+I+I   R QLRL+ +ISLQ
Sbjct: 68  RKLER-ASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQ 107

The following BLAST results are available for this feature:
BLAST of Cla008869 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4Z8_CUCSA3.2e-1149.51Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1[more]
BLAST of Cla008869 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778688278|ref|XP_011652707.1|4.7e-1149.51PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus][more]
gi|700200554|gb|KGN55687.1|4.7e-1149.51hypothetical protein Csa_3G004530 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla008869Cla008869gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla008869Cla008869.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla008869.1.cds1Cla008869.1.cds1CDS