Cla008349.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla008349
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Zinc finger family protein (AHRD V1 -- D7KQL4_ARALL); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type
Location	Chr1 : 10163571 .. 10164254 (+)
Sequence length	684

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCACCGCCGGCGCCACCGCTTCCGCCACCTCCGGCCTCCACTGCGAGGTTTGGCAGCCCCAAGACTTCTCCGAAACTCCTTGCTCTTCATCTTCTTCTTCTCAATCTCAACCCCCTGAATTCTTCATCGATTTCTACGTTTCTTCTTACGCAACTCAAGGCGACGAAATCATCAGCACGCTTCGTTACAAGAATTTCCGGCAAAGATGTGATGTTCTAACTCAAGATTCCTTCTCTTGGTCTGCAATTTCCTCTATGCTTTCGGAAACCGATGTCCCTTATCATCTTCAACCCTTTTTCATTCACCAAATTTCCATTAGGGCTCGCGGAATCGCTACCGAACCCATTAACGCTCTCTCCCGCACCATTCCCATGGTCGTCGAGCTCATGCTCCCCGAGGAAGCCATGGAGGATTCCGGTTATAGGTCAGACACCCACTTGGGAATTGGGTCGGGTCGGGCCAGTAGGGCTTCGATCCAGGAAATGGAGAGAATTGAAATTGATGGGGTTTTGGGTGATTGTGTGATCTGTTTGGATGAGATTGATTCAATTGGGTATGAAATTGATGCTGTTCGAATGTCTTGTTTACATGTTTATCATCGAAATTGTATTCACAAATGGCTAGAACTCAGTAATCGTTGCCCTCTGTGTCGGTTTCAGATGCCATTGGAAGAAGAATGA

mRNA sequence

ATGTCCACCGCCGGCGCCACCGCTTCCGCCACCTCCGGCCTCCACTGCGAGGTTTGGCAGCCCCAAGACTTCTCCGAAACTCCTTGCTCTTCATCTTCTTCTTCTCAATCTCAACCCCCTGAATTCTTCATCGATTTCTACGTTTCTTCTTACGCAACTCAAGGCGACGAAATCATCAGCACGCTTCGTTACAAGAATTTCCGGCAAAGATGTGATGTTCTAACTCAAGATTCCTTCTCTTGGTCTGCAATTTCCTCTATGCTTTCGGAAACCGATGTCCCTTATCATCTTCAACCCTTTTTCATTCACCAAATTTCCATTAGGGCTCGCGGAATCGCTACCGAACCCATTAACGCTCTCTCCCGCACCATTCCCATGGTCGTCGAGCTCATGCTCCCCGAGGAAGCCATGGAGGATTCCGGTTATAGGTCAGACACCCACTTGGGAATTGGGTCGGGTCGGGCCAGTAGGGCTTCGATCCAGGAAATGGAGAGAATTGAAATTGATGGGGTTTTGGGTGATTGTGTGATCTGTTTGGATGAGATTGATTCAATTGGGTATGAAATTGATGCTGTTCGAATGTCTTGTTTACATGTTTATCATCGAAATTGTATTCACAAATGGCTAGAACTCAGTAATCGTTGCCCTCTGTGTCGGTTTCAGATGCCATTGGAAGAAGAATGA

Coding sequence (CDS)

ATGTCCACCGCCGGCGCCACCGCTTCCGCCACCTCCGGCCTCCACTGCGAGGTTTGGCAGCCCCAAGACTTCTCCGAAACTCCTTGCTCTTCATCTTCTTCTTCTCAATCTCAACCCCCTGAATTCTTCATCGATTTCTACGTTTCTTCTTACGCAACTCAAGGCGACGAAATCATCAGCACGCTTCGTTACAAGAATTTCCGGCAAAGATGTGATGTTCTAACTCAAGATTCCTTCTCTTGGTCTGCAATTTCCTCTATGCTTTCGGAAACCGATGTCCCTTATCATCTTCAACCCTTTTTCATTCACCAAATTTCCATTAGGGCTCGCGGAATCGCTACCGAACCCATTAACGCTCTCTCCCGCACCATTCCCATGGTCGTCGAGCTCATGCTCCCCGAGGAAGCCATGGAGGATTCCGGTTATAGGTCAGACACCCACTTGGGAATTGGGTCGGGTCGGGCCAGTAGGGCTTCGATCCAGGAAATGGAGAGAATTGAAATTGATGGGGTTTTGGGTGATTGTGTGATCTGTTTGGATGAGATTGATTCAATTGGGTATGAAATTGATGCTGTTCGAATGTCTTGTTTACATGTTTATCATCGAAATTGTATTCACAAATGGCTAGAACTCAGTAATCGTTGCCCTCTGTGTCGGTTTCAGATGCCATTGGAAGAAGAATGA

Protein sequence

MSTAGATASATSGLHCEVWQPQDFSETPCSSSSSSQSQPPEFFIDFYVSSYATQGDEIISTLRYKNFRQRCDVLTQDSFSWSAISSMLSETDVPYHLQPFFIHQISIRARGIATEPINALSRTIPMVVELMLPEEAMEDSGYRSDTHLGIGSGRASRASIQEMERIEIDGVLGDCVICLDEIDSIGYEIDAVRMSCLHVYHRNCIHKWLELSNRCPLCRFQMPLEEE

Homology

[Close]

BLAST of Cla008349 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.3e-09
Identity = 26/81 (32.10%), Postives = 46/81 (56.79%), Query Frame = 1


Query: 151 GSGRASRASIQEMERIEID-----GVLGDCVICLDEIDSIGYEIDAVRMSCLHVYHRNCI 210
           G+  AS+++I  +  +++        +  C +C+DE +      D  +M C HV+H++C+
Sbjct: 187 GTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGS---DVKQMPCKHVFHQDCL 246

Query: 211 HKWLELSNRCPLCRFQMPLEE 227
             WLEL N CP+CRF++P ++
Sbjct: 247 LPWLELHNSCPVCRFELPTDD 264

[Close]

BLAST of Cla008349 vs. Swiss-Prot
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.3e-09
Identity = 28/79 (35.44%), Postives = 47/79 (59.49%), Query Frame = 1


Query: 151 GSGRASRASIQEMERIEID----GVLGDCVICLDEIDSIGYEIDAVRMSCLHVYHRNCIH 210
           G+  AS+++I+ + R+EI     G   +C +C +  ++   E +A  M C H++H +CI 
Sbjct: 171 GNPPASKSAIESLPRVEISDCHIGSEANCAVCTEIFET---ETEAREMPCKHLFHDDCIV 230

Query: 211 KWLELSNRCPLCRFQMPLE 226
            WL + N CP+CRF++P E
Sbjct: 231 PWLSIRNSCPVCRFELPSE 246

[Close]

BLAST of Cla008349 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-08
Identity = 25/81 (30.86%), Postives = 46/81 (56.79%), Query Frame = 1


Query: 151 GSGRASRASIQEMERIEI-----DGVLGDCVICLDEIDSIGYEIDAVRMSCLHVYHRNCI 210
           G+  AS+++I+ +  + I     +     C +C+D+ +      +A +M C H+YH++C+
Sbjct: 195 GTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEE---GTEAKQMPCKHLYHKDCL 254

Query: 211 HKWLELSNRCPLCRFQMPLEE 227
             WLEL N CP+CR ++P ++
Sbjct: 255 LPWLELHNSCPVCRHELPTDD 272

[Close]

BLAST of Cla008349 vs. Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.2e-08
Identity = 26/75 (34.67%), Postives = 42/75 (56.00%), Query Frame = 1


Query: 155 ASRASIQEMERIEIDGVLGD--CVICLDEIDSIGYEIDAVRMSCLHVYHRNCIHKWLELS 214
           A++ +++ + R  I G   +  C +CL E +    E  A+ M C H++H NCI  WL  +
Sbjct: 54  AAKTAVENLPRTVIRGSQAELKCPVCLLEFEE---EETAIEMPCHHLFHSNCILPWLSKT 113

Query: 215 NRCPLCRFQMPLEEE 228
           N CPLCR ++P +++
Sbjct: 114 NSCPLCRHELPTDDD 125

[Close]

BLAST of Cla008349 vs. Swiss-Prot
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.2e-08
Identity = 26/75 (34.67%), Postives = 41/75 (54.67%), Query Frame = 1


Query: 155 ASRASIQEMERIEIDGVLGD--CVICLDEIDSIGYEIDAVRMSCLHVYHRNCIHKWLELS 214
           A++A ++ + R  I     D  C +CL E ++   E   + M C H++H NCI  WL  +
Sbjct: 66  AAKAVVESLPRTVISSAKADLKCPVCLLEFEA---EETVIEMPCHHLFHSNCILPWLSKT 125

Query: 215 NRCPLCRFQMPLEEE 228
           N CPLCR ++P +++
Sbjct: 126 NSCPLCRHELPTDDD 137

[Close]

BLAST of Cla008349 vs. TrEMBL
Match: A0A0A0LR28_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G045460 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 4.4e-109
Identity = 197/219 (89.95%), Postives = 204/219 (93.15%), Query Frame = 1


Query: 10  ATSGLHCEVWQPQDFSETPCSSS-SSSQSQPPEFFIDFYVSSYATQGDEIISTLRYKNFR 69
           A SGLHCEVWQPQDFSE  CSSS SSSQ QPPEFFIDFYVSSYAT GDE+ISTLRYKNFR
Sbjct: 5   AISGLHCEVWQPQDFSEPSCSSSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRYKNFR 64

Query: 70  QRCDVLTQDSFSWSAISSMLSETDVPYHLQPFFIHQISIRARGIATEPINALSRTIPMVV 129
           QRCDVLTQDSFSWSAISSMLSET+VPYHLQPFFIHQIS RARGIATEPINALSRTIPMVV
Sbjct: 65  QRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISTRARGIATEPINALSRTIPMVV 124

Query: 130 ELMLPEEAMEDSGYRSDTHLGIGSGRASRASIQEMERIEIDGVLGDCVICLDEIDSIGYE 189
           EL+LPE+AMEDSGY S+ H+GIGSGRASRASIQEMERIEIDGVL DCVICLDEI SIG E
Sbjct: 125 ELILPEDAMEDSGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGSIGCE 184

Query: 190 IDAVRMSCLHVYHRNCIHKWLELSNRCPLCRFQMPLEEE 228
           ID V+M CLHVYH NCIHKWLELSNRCPLCRFQMPLEEE
Sbjct: 185 IDVVQMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE 223

[Close]

BLAST of Cla008349 vs. TrEMBL
Match: A0A059CZC5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00460 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 9.4e-35
Identity = 96/225 (42.67%), Postives = 125/225 (55.56%), Query Frame = 1


Query: 16  CEVWQPQDFSETPCSSSSSSQSQPPEFFIDFYVSS-YATQGDEI--------ISTLRYKN 75
           CE WQPQD      S    + SQ  EF I+ Y +  Y   G +         IS   YK 
Sbjct: 6   CEAWQPQD------SVPEETLSQRDEFLIEIYANFVYVRMGSDDADSSSNPHISPTTYKP 65

Query: 76  FRQRCDVLTQDSFSWSAISSMLSETDVPYHLQPFFIHQISIRARGIATEPINALSRTIPM 135
           FR   D L +D+ SWS ISSMLS+ +VPYH+QP  I +I   AR IA   +N   RT+PM
Sbjct: 66  FRHSRDHLIRDATSWSTISSMLSQVNVPYHVQPLMIRKIHEAARSIANASVNKDLRTLPM 125

Query: 136 VVELMLPEEAMEDSGYRSDTHLGI------GSGRASRASIQEMERIEIDGVLGD-CVICL 195
           VV + + +E   ++    +    +      GSG AS +SIQ +E++++ G   + CVICL
Sbjct: 126 VVSIRVVQEVPGETLPVPEVQAELMSVHASGSGAASWSSIQALEKVKVGGGSEEKCVICL 185

Query: 196 DEIDSIGYEIDAVRMSCLHVYHRNCIHKWLELSNRCPLCRFQMPL 225
           D I  +G E  AVRM CLH YH  CI  WL+ SN CPLCRF MP+
Sbjct: 186 DRI-MVGSE--AVRMPCLHNYHEECIVNWLQRSNLCPLCRFPMPM 221

[Close]

BLAST of Cla008349 vs. TrEMBL
Match: M5WCF0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016054mg PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.1e-34
Identity = 78/167 (46.71%), Postives = 110/167 (65.87%), Query Frame = 1


Query: 60  STLRYKNFRQRCDVLTQDSFSWSAISSMLSETDVPYHLQPFFIHQISIRARGIATEPINA 119
           STL +  F+++C +LT+   SWS IS+ML++  VPYH+QPF IH IS RAR IA EP NA
Sbjct: 39  STLHFHKFKEQCHLLTESRTSWSVISNMLTQILVPYHVQPFMIHTISTRAREIAGEPENA 98

Query: 120 LSRTIPMVVELMLPEEA-MEDSGYRSDTHLGIGSGRASRASIQEMERIEIDGVLGDCVIC 179
              TIP++V L + +E  +ED      +   +   RA +++I E+E+++++G    CVIC
Sbjct: 99  NRNTIPILVSLTVGQEPFLEDQDEPEISDHVLQLVRARKSAIDELEKVKVEGCAKPCVIC 158

Query: 180 LDEIDSIGYEIDAVRMSCLHVYHRNCIHKWLELSNRCPLCRFQMPLE 226
           L+EI +     +A RM C HVYH +CI  WLE S+ CPLCRF+MP E
Sbjct: 159 LEEIVN---GSEATRMPCFHVYHESCIVNWLEKSHLCPLCRFEMPAE 202

[Close]

BLAST of Cla008349 vs. TrEMBL
Match: M1DK31_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400039868 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.7e-21
Identity = 70/224 (31.25%), Postives = 111/224 (49.55%), Query Frame = 1


Query: 15  HCEVWQPQDFSETPCSSSSSSQSQPPEFFIDFYVSSYATQGDE----------IISTLRY 74
           +C+  Q +    +    +S  Q     FFI F V     Q DE          + S ++ 
Sbjct: 8   YCDAHQDESLDTSSVEPTSYDQ-----FFIKFEVEFLREQEDEDEDEELNVSRLESIIKI 67

Query: 75  KNFRQRCDVLTQDSFSWSAISSMLSETDVPYHLQPFFIHQISIRARGIATEPINALSRTI 134
             F++RCD L  ++ SW  ++ ML   +VP H QP  + QI   A  IA E  N   + +
Sbjct: 68  GIFQERCDRLPHNNLSWHNVTRMLHIMEVPVHRQPMILRQICTFADRIANETYNRNKKIL 127

Query: 135 PMVVELMLPEEAMEDSGYRSDTHLGIGSGRASRASIQE-MERIEIDGV-LGD---CVICL 194
           PM V + LP +   +    SD  +     R +   ++E +E+++I+   LG    CVIC+
Sbjct: 128 PMKVYISLPVDYFIEENENSDEEI-----RPANELVEENLEKVKIEETELGSDFVCVICM 187

Query: 195 DEIDSIGYEIDAVRMSCLHVYHRNCIHKWLELSNRCPLCRFQMP 224
           ++++ +G E  A +M C HVYH NC+  WL +   CP CRF++P
Sbjct: 188 EKME-VGSE--ATKMPCSHVYHENCLMNWLGVKRVCPTCRFELP 218

[Close]

BLAST of Cla008349 vs. TrEMBL
Match: K4BMW8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-19
Identity = 69/224 (30.80%), Postives = 110/224 (49.11%), Query Frame = 1


Query: 15  HCEVWQPQDFSETPCSSSSSSQSQPPEFFIDFYVSSYATQGDE-----------IISTLR 74
           +C+  Q +    +    +S  Q     FFI F V     Q D+           + S ++
Sbjct: 8   YCDAHQDESLDVSSVEPTSYDQ-----FFIKFEVEFLREQEDDDDDEEELYVSRLESIIK 67

Query: 75  YKNFRQRCDVLTQDSFSWSAISSMLSETDVPYHLQPFFIHQISIRARGIATEPINALSRT 134
              F++RCD L  ++ SW  ++ ML   +VP   QP  +HQI   A  IA EP N   + 
Sbjct: 68  TGIFQERCDRLPHNNLSWHNVTRMLHIMEVPVDRQPMILHQICNFADRIANEPYNRNKKI 127

Query: 135 IPMVVELMLPEEAMEDSGYRSDTHLGIGSGRASRASIQEMERIEI-DGVLGD---CVICL 194
           +P+ V + LP     +    SD  +      A+    Q++E+++I +  LG    CVIC+
Sbjct: 128 LPIKVYISLPVNYFIEENESSDVTI----RPANELVEQDLEKVKIEESELGSDFVCVICM 187

Query: 195 DEIDSIGYEIDAVRMSCLHVYHRNCIHKWLELSNRCPLCRFQMP 224
           ++++ +G E  A +M C HVYH NC+  WL ++  CP CRF +P
Sbjct: 188 EKME-VGSE--ATKMPCSHVYHGNCLMNWLGVNRVCPTCRFVLP 219

[Close]

BLAST of Cla008349 vs. NCBI nr
Match: gi|659067058|ref|XP_008437461.1| (PREDICTED: uncharacterized protein LOC103482872 [Cucumis melo])

HSP 1 Score: 412.9 bits (1060), Expect = 3.6e-112
Identity = 201/222 (90.54%), Postives = 208/222 (93.69%), Query Frame = 1


Query: 6   ATASATSGLHCEVWQPQDFSETPCSSSSSSQSQPPEFFIDFYVSSYATQGDEIISTLRYK 65
           + A+A SGLHCEVWQPQDFSE  CSSSSSSQ QPPEFFIDFYVSSYAT GDE+ISTLRYK
Sbjct: 2   SAAAAISGLHCEVWQPQDFSEPSCSSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRYK 61

Query: 66  NFRQRCDVLTQDSFSWSAISSMLSETDVPYHLQPFFIHQISIRARGIATEPINALSRTIP 125
           NFRQRCDVLTQDSFSWSAISSMLSET+VPYHLQPFFIHQISIRARGIATEPINALSRTIP
Sbjct: 62  NFRQRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISIRARGIATEPINALSRTIP 121

Query: 126 MVVELMLPEEAMEDSGYRSDTHLGIGSGRASRASIQEMERIEIDGVLGDCVICLDEIDSI 185
           MVVELMLPE+AME SGY S+ H+GIGSGRASRASIQEMERIEIDGVL DCVICLDEI SI
Sbjct: 122 MVVELMLPEDAMEGSGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGSI 181

Query: 186 GYEIDAVRMSCLHVYHRNCIHKWLELSNRCPLCRFQMPLEEE 228
           G EIDAVRM CLHVYH NCIHKWLELSNRCPLCRFQMPLEEE
Sbjct: 182 GCEIDAVRMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE 223

[Close]

BLAST of Cla008349 vs. NCBI nr
Match: gi|449469653|ref|XP_004152533.1| (PREDICTED: LON peptidase N-terminal domain and RING finger protein 2-like [Cucumis sativus])

HSP 1 Score: 402.1 bits (1032), Expect = 6.3e-109
Identity = 197/219 (89.95%), Postives = 204/219 (93.15%), Query Frame = 1


Query: 10  ATSGLHCEVWQPQDFSETPCSSS-SSSQSQPPEFFIDFYVSSYATQGDEIISTLRYKNFR 69
           A SGLHCEVWQPQDFSE  CSSS SSSQ QPPEFFIDFYVSSYAT GDE+ISTLRYKNFR
Sbjct: 5   AISGLHCEVWQPQDFSEPSCSSSSSSSQFQPPEFFIDFYVSSYATHGDEVISTLRYKNFR 64

Query: 70  QRCDVLTQDSFSWSAISSMLSETDVPYHLQPFFIHQISIRARGIATEPINALSRTIPMVV 129
           QRCDVLTQDSFSWSAISSMLSET+VPYHLQPFFIHQIS RARGIATEPINALSRTIPMVV
Sbjct: 65  QRCDVLTQDSFSWSAISSMLSETNVPYHLQPFFIHQISTRARGIATEPINALSRTIPMVV 124

Query: 130 ELMLPEEAMEDSGYRSDTHLGIGSGRASRASIQEMERIEIDGVLGDCVICLDEIDSIGYE 189
           EL+LPE+AMEDSGY S+ H+GIGSGRASRASIQEMERIEIDGVL DCVICLDEI SIG E
Sbjct: 125 ELILPEDAMEDSGYGSEPHMGIGSGRASRASIQEMERIEIDGVLSDCVICLDEIGSIGCE 184

Query: 190 IDAVRMSCLHVYHRNCIHKWLELSNRCPLCRFQMPLEEE 228
           ID V+M CLHVYH NCIHKWLELSNRCPLCRFQMPLEEE
Sbjct: 185 IDVVQMPCLHVYHLNCIHKWLELSNRCPLCRFQMPLEEE 223

[Close]

BLAST of Cla008349 vs. NCBI nr
Match: gi|645269135|ref|XP_008239859.1| (PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Prunus mume])

HSP 1 Score: 170.6 bits (431), Expect = 3.1e-39
Identity = 90/213 (42.25%), Postives = 131/213 (61.50%), Query Frame = 1


Query: 16  CEVWQPQDFSETPCSSSSSSQSQPPEFFIDFYVSSYATQGDEII--STLRYKNFRQRCDV 75
           CEVWQ ++F            S+ PEF I+ + S    +   ++  STL +  F+++C +
Sbjct: 10  CEVWQSENFEP---GEEDFLYSRKPEFLIEIFASFTREEDYPLVPRSTLHFHKFKEQCHL 69

Query: 76  LTQDSFSWSAISSMLSETDVPYHLQPFFIHQISIRARGIATEPINALSRTIPMVVELMLP 135
           LT+   SWS IS+ML++  VPYH+QPF IH IS RAR IA EP NA    IP++V L + 
Sbjct: 70  LTESRTSWSVISNMLTQILVPYHVQPFMIHTISTRAREIAGEPENANRNIIPILVSLTVG 129

Query: 136 EEA-MEDSGYRSDTHLGIGSGRASRASIQEMERIEIDGVLGDCVICLDEIDSIGYEIDAV 195
           +E  +ED      +   + S RA +++I E+E+++++G    CVICL+EI +     +A 
Sbjct: 130 QEPFLEDQDEPEISDHVLQSVRARKSAIDELEKVKVEGCAKPCVICLEEIVN---GSEAT 189

Query: 196 RMSCLHVYHRNCIHKWLELSNRCPLCRFQMPLE 226
           RM C HVYH +CI  WLE S+ CPLCRF+MP+E
Sbjct: 190 RMPCFHVYHESCIGNWLEKSHLCPLCRFEMPVE 216

[Close]

BLAST of Cla008349 vs. NCBI nr
Match: gi|702281757|ref|XP_010045575.1| (PREDICTED: uncharacterized protein LOC104434326 [Eucalyptus grandis])

HSP 1 Score: 155.2 bits (391), Expect = 1.3e-34
Identity = 96/225 (42.67%), Postives = 125/225 (55.56%), Query Frame = 1


Query: 16  CEVWQPQDFSETPCSSSSSSQSQPPEFFIDFYVSS-YATQGDEI--------ISTLRYKN 75
           CE WQPQD      S    + SQ  EF I+ Y +  Y   G +         IS   YK 
Sbjct: 6   CEAWQPQD------SVPEETLSQRDEFLIEIYANFVYVRMGSDDADSSSNPHISPTTYKP 65

Query: 76  FRQRCDVLTQDSFSWSAISSMLSETDVPYHLQPFFIHQISIRARGIATEPINALSRTIPM 135
           FR   D L +D+ SWS ISSMLS+ +VPYH+QP  I +I   AR IA   +N   RT+PM
Sbjct: 66  FRHSRDHLIRDATSWSTISSMLSQVNVPYHVQPLMIRKIHEAARSIANASVNKDLRTLPM 125

Query: 136 VVELMLPEEAMEDSGYRSDTHLGI------GSGRASRASIQEMERIEIDGVLGD-CVICL 195
           VV + + +E   ++    +    +      GSG AS +SIQ +E++++ G   + CVICL
Sbjct: 126 VVSIRVVQEVPGETLPVPEVQAELMSVHASGSGAASWSSIQALEKVKVGGGSEEKCVICL 185

Query: 196 DEIDSIGYEIDAVRMSCLHVYHRNCIHKWLELSNRCPLCRFQMPL 225
           D I  +G E  AVRM CLH YH  CI  WL+ SN CPLCRF MP+
Sbjct: 186 DRI-MVGSE--AVRMPCLHNYHEECIVNWLQRSNLCPLCRFPMPM 221

[Close]

BLAST of Cla008349 vs. NCBI nr
Match: gi|595851940|ref|XP_007210215.1| (hypothetical protein PRUPE_ppa016054mg, partial [Prunus persica])

HSP 1 Score: 154.1 bits (388), Expect = 3.0e-34
Identity = 78/167 (46.71%), Postives = 110/167 (65.87%), Query Frame = 1


Query: 60  STLRYKNFRQRCDVLTQDSFSWSAISSMLSETDVPYHLQPFFIHQISIRARGIATEPINA 119
           STL +  F+++C +LT+   SWS IS+ML++  VPYH+QPF IH IS RAR IA EP NA
Sbjct: 39  STLHFHKFKEQCHLLTESRTSWSVISNMLTQILVPYHVQPFMIHTISTRAREIAGEPENA 98

Query: 120 LSRTIPMVVELMLPEEA-MEDSGYRSDTHLGIGSGRASRASIQEMERIEIDGVLGDCVIC 179
              TIP++V L + +E  +ED      +   +   RA +++I E+E+++++G    CVIC
Sbjct: 99  NRNTIPILVSLTVGQEPFLEDQDEPEISDHVLQLVRARKSAIDELEKVKVEGCAKPCVIC 158

Query: 180 LDEIDSIGYEIDAVRMSCLHVYHRNCIHKWLELSNRCPLCRFQMPLE 226
           L+EI +     +A RM C HVYH +CI  WLE S+ CPLCRF+MP E
Sbjct: 159 LEEIVN---GSEATRMPCFHVYHESCIVNWLEKSHLCPLCRFEMPAE 202

The following BLAST results are available for this feature:

BLAST of Cla008349 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RNG1L_ARATH	3.3e-09	32.10	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1...	[more]
RDUF2_ARATH	4.3e-09	35.44	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1	[more]
RING1_GOSHI	1.7e-08	30.86	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1	[more]
RN181_BOVIN	8.2e-08	34.67	E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1	[more]
RN181_MOUSE	8.2e-08	34.67	E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=1 SV=1	[more]

BLAST of Cla008349 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR28_CUCSA	4.4e-109	89.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G045460 PE=4 SV=1	[more]
A0A059CZC5_EUCGR	9.4e-35	42.67	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00460 PE=4 SV=1	[more]
M5WCF0_PRUPE	2.1e-34	46.71	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016054mg PE=4 S...	[more]
M1DK31_SOLTU	7.7e-21	31.25	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400039868 PE=4 SV=1	[more]
K4BMW8_SOLLC	1.5e-19	30.80	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of Cla008349 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659067058\|ref\|XP_008437461.1\|	3.6e-112	90.54	PREDICTED: uncharacterized protein LOC103482872 [Cucumis melo]	[more]
gi\|449469653\|ref\|XP_004152533.1\|	6.3e-109	89.95	PREDICTED: LON peptidase N-terminal domain and RING finger protein 2-like [Cucum...	[more]
gi\|645269135\|ref\|XP_008239859.1\|	3.1e-39	42.25	PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Prunus mume]	[more]
gi\|702281757\|ref\|XP_010045575.1\|	1.3e-34	42.67	PREDICTED: uncharacterized protein LOC104434326 [Eucalyptus grandis]	[more]
gi\|595851940\|ref\|XP_007210215.1\|	3.0e-34	46.71	hypothetical protein PRUPE_ppa016054mg, partial [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla008349	Cla008349	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla008349	Cla008349.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla008349.1.cds1	Cla008349.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 174..219 score: 1.1
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 175..218 score: 3.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 175..219 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 174..224 score: 7.7
None	No IPR available	PANTHER	PTHR22763	RING ZINC FINGER PROTEIN	coord: 155..227 score: 2.4
None	No IPR available	PANTHER	PTHR22763:SF77	SUBFAMILY NOT NAMED	coord: 155..227 score: 2.4
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 174..223 score: 1.3