Cla007861.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007861
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Sigma 54 modulation protein/ribosomal protein S30EA (AHRD V1 *--- A0ZCI5_NODSP); contains Interpro domain(s) IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein
Location	Chr2 : 2028102 .. 2032289 (-)
Sequence length	963

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Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATGGCCACTCTCACCTCTTCTATGCAGGCCAATCTCCTTTCCCATCACTCCTTATCTTCTTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTTCCATTTCTTTCTTTCCAGCTTCCTTCTCTCTTCACTTCTCTGCGCTCAAAGTTCATGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTGGAACCATTGAGACTCCATCCCGCAGCCGTCATGCCTCAAACTCTTTCAATGTTCGGATGTCCTGGGACGGCCACCTCTCCTCTGTCAAATTAATTGTCCAAGGGAAAAATTTGGAGGTATTTCATTTAGCTTCATCTTTGCTATTGTTTCTCATGCAATGCGACTTCTTCTTTTCACTATCTTGAATTGTTAATTCTTCCCATGTTTGATTCAGTAATTACTATCAAATGAATCCACATAACCTCTAACTTTTTCATACCCCATTCTCTATGCTATTTCAATCACCATATCCCTTTACTCAAACCCTACCCTTGTATTTGCTGACTTCTCCATTTCCACTACATTTAGTTTACAAACCCTAAACTCTGCCTCATTTCTTTAAATATTTTCCGTATCAACATTCGTGGCCCTTCTCCATTCTTCTTTTTACTCTGCACACCTCTTTGAAGTGAACGCATCGCATAAGGAATTCACTATCATTTTCAAAAACTCCTCCCTCCATCTCCTAATCTCTCAGCGAATTTTGATATTGATATTCTATATCTTCGCTTATTGCAGCTAGAAGATTGTTCCTTGGTCAAAGAATCAGGGTGCATTCACTCTCTTCAATATCAGCATCTAAACCAAATTTATTCTTCTCTACATTCTCATCAAACACAACCATTTTTCCTTCATAATCATTCCATTCCAGGAAACGCACGATGGCTACTTCATACTTCCCAATTTCAACCGTTATCTGCTTGAAGGAATCCTTTGTAAAATTGGATCAAGATATCTGTAGGCCCCTGTTTCTTTCACTTAATACAAGACACACAACTCAAGCTTTATCATCCTGCTTAGATCTTGAACATGATACACGCATCAAAAGCAGTCAACACATGTAATAAAAGACTGCTGCCTCGTTATGGAAATATTAGAGTTATTAGTATGGTTATTAGAAGGGCATATTAGTAATTAGTTAGTAAGTTTGTTAGAGCTTTTAGTTATAAATAGAGAGAGTTGGTTGGGAGCAAGGTGTGGATCATTTTGGTAGTAATTTCCTTTGTGGGAATTTAAGTGGGTGTAACCCTCTCGAAAGGAAAGGCTATGATATTGTAGTTTCTTCATTCATCTTGCAATATAATTCTATCTTTTTGTGTTTGTTGTTCTTCAATGTTCATGCTAGCTGATAACCCAACTACACCCTAATCTAGATGATACGGATTTGACACCAAATATTAGGAATAAGCTCTTCAAAGAAATAAAAGCAGGAGAAATATACTGTTAAAAACATGCTGGAAATGATAACAAAGTTTAATAAGGTGGTCATCATACTGAACTTACCTACTAGATGCAGATAAAGAAATTACCTACTAACACTTATAAACAAGCTACCTTAGTTGTAGAAACTCTGCTGCTGCAAAATGACAAGACCACCTACTAACTAGAAATTCTAACATGTACTTCTAGAAGTTGTCCGAGTTTCAGTTACCCAATTTATGGTATCTCAATGTTTCAAATGTCAAACATTGAGTGGATTGAGGGTTTTGACTTTAGTTTGGGAGAAGGGATGTTCGTGTTTGGAGTCCTAACCCATTGGAGGGTTTCTCTTGTACGTCGTTCTTTAGGATTTTATTAGATCCTTCTCTTGTTGTTGAGTCGGTCTTTGATGTTTTATGGAGGATTAAGATTCCAAAGAAAGTTAAGTTCTTTTCCTAGCAAGTTTTGCTTGGTCGTGTGAATACGATGGATACGATTTTGAGAAAGATGTCTTCGTTAATGGGTCTATTTTGTTGTATTTTTTGTCGGAAGATGGAGGAAACCTAGATCACCTTCTTGGAGTGTCAGTTTGCGAGATCTGTTTGGAACGGTTTCTTGCAAGAGTTTGATTTTAATCTTGCTCACCGGTTGATAATTGGGGAGTTCCTTCTCCATCCGTCTTTCAAAGAGAAAGGTCATTTTCTTTGATTTGTGGGGGTGTGTGTTTTGTGGGATCTTTGGGAGGAGAGAAACAATAGAGTGTTTCGGGTTGTGGAGGGACCCTAGCAAGGTTTGGTCTTTATTGAGGTTTCATGTTTCTCTTTGGGCTTCGGTTTTGAAGGCTTTTTGTTATCACTCTCTAGTCAATATCTTACCTAGATGGAAACACTTTCTTTAGTTGGAGATTTTTTTTTGTGTGAGTTTTCTTTTTTTGTATGCCCTTGCATTCTTTCCTTTTTTTTCCTCAATGAAATAGTTGTTTCTGTATTTTTTTTAAAAAAATACAATAATACAAAAAGAAAAAAATACAAAAATAAAAATAAAATAAAATAAAGAAAAAACATTGAGTTGATTTATGTTTAATTGTGCAAAAAACTAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTTGGGAAGGGTCCAAGGATAAGAAGATGTGAGGTACTCTATTGCTCCTTTATTTTAAATTTATCCATATGAATTGAACCCTCATTCGTTTCCAAAAACATTTGTGTTTATATAGGTTACTTTATTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCCGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCATGGCCGACACATGAAAGGATTTGACAGATTGAAAGTAAGAGAACCTGCACCAATAGTAGTTGGAGATGAGGATGAGGAAGTTTTTCAAGAAGATGGTGGAGAAGTTATTGATGAGGTTATTCTTCCAACCTTTGGGTTTTTACTTTGAGTTCATTTAAGGTGATATTAGCTTATAAAAGCTCATGTATGCCATGCCTTATGCCATGCCTGTTAATTATTTTCTACATGTCGAAGCTTATTATGAAACTTACTAAACCACATCTTTCCTCACTTAGTTATTGAAAACATTGTTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCATCAATTAGTAGTGGGAAAACTCCAGATGCAGTACTCAGATTAGTTGAACCATGTGCAATAAGTTACTCCTCGCATAGGTGGGAAGAACGGAAAGAAATGCATTCTCAATCTTGATTACCCCCCTCTGATGTGCTATTCTCAACTGAGTTCAGCTCAAAGTCCTATTTTTATTTACATTATAGGATTAATAAGTCAGTTCTTTTATTTCACAACATGACATCTTAGATAAACATGAAAAAATCGGAAGTTGGACCTGACAACTGTAAGATAGAGGGCCTCCATAGTTTGTAGGAGTCTGTTATCTGTTATTTCTCACAGAGCTAACATTGTGTTGACTGTTATTTTATTGATCCTTTGCTCCTCATGAGTGTTTTGTGGTCCATTCCAATGTACTTGATCGTTATAGCTTTTGATTTACTTGCTGCTTATTTTGTTTACATTCAATTTTGGTTGGAAGGACTTATGATATTCGTCCTTTTTAGATAACGATCATGTATTATACATATTCTGGAAGCTCGTGAATGATATGTACACATGATTAAAATATTAATTTTTCCTTTTCATGCTAGCAATTTTTTATTTTGGTATCTCATTGCTCATTTTTATCTTGATTTCAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATTGAACAACTCAAAAATATTGACCATGATTTCTATGGTTTTCGGAATGAAGAAACTGGTGCGTTGATTTGATTATTATGATGATCTTGCTTTGTTGGGATTCTTTGCTGTTTATATCGTAGCTTATTGTCTGAATCTTTGGCCCAGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATTATCCCAAAAGAAAATGGCAAAGCTGAGAAATTAGAACCTGTCACAGTTGAAGCAGCCAGAGAACCATCCTTAGCGGAATGA

mRNA sequence

ATGGTAATGGCCACTCTCACCTCTTCTATGCAGGCCAATCTCCTTTCCCATCACTCCTTATCTTCTTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTTCCATTTCTTTCTTTCCAGCTTCCTTCTCTCTTCACTTCTCTGCGCTCAAAGTTCATGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTGGAACCATTGAGACTCCATCCCGCAGCCGTCATGCCTCAAACTCTTTCAATGTTCGGATGTCCTGGGACGGCCACCTCTCCTCTGTCAAATTAATTGTCCAAGGGAAAAATTTGGAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTTGGGAAGGGTCCAAGGATAAGAAGATGTGAGGTTACTTTATTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCCGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCATGGCCGACACATGAAAGGATTTGACAGATTGAAAGTAAGAGAACCTGCACCAATAGTAGTTGGAGATGAGGATGAGGAAGTTTTTCAAGAAGATGGTGGAGAAGTTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATTGAACAACTCAAAAATATTGACCATGATTTCTATGGTTTTCGGAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATTATCCCAAAAGAAAATGGCAAAGCTGAGAAATTAGAACCTGTCACAGTTGAAGCAGCCAGAGAACCATCCTTAGCGGAATGA

Coding sequence (CDS)

ATGGTAATGGCCACTCTCACCTCTTCTATGCAGGCCAATCTCCTTTCCCATCACTCCTTATCTTCTTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTTCCATTTCTTTCTTTCCAGCTTCCTTCTCTCTTCACTTCTCTGCGCTCAAAGTTCATGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTGGAACCATTGAGACTCCATCCCGCAGCCGTCATGCCTCAAACTCTTTCAATGTTCGGATGTCCTGGGACGGCCACCTCTCCTCTGTCAAATTAATTGTCCAAGGGAAAAATTTGGAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTTGGGAAGGGTCCAAGGATAAGAAGATGTGAGGTTACTTTATTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCCGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCATGGCCGACACATGAAAGGATTTGACAGATTGAAAGTAAGAGAACCTGCACCAATAGTAGTTGGAGATGAGGATGAGGAAGTTTTTCAAGAAGATGGTGGAGAAGTTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATTGAACAACTCAAAAATATTGACCATGATTTCTATGGTTTTCGGAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATTATCCCAAAAGAAAATGGCAAAGCTGAGAAATTAGAACCTGTCACAGTTGAAGCAGCCAGAGAACCATCCTTAGCGGAATGA

Protein sequence

MVMATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSCSISFFPASFSLHFSALKVHALSSNTSAFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKAEKLEPVTVEAAREPSLAE

Homology

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BLAST of Cla007861 vs. Swiss-Prot
Match: PRSP1_SPIOL (Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea GN=PSRP1 PE=1 SV=2)

HSP 1 Score: 344.0 bits (881), Expect = 1.8e-93
Identity = 192/330 (58.18%), Postives = 239/330 (72.42%), Query Frame = 1


Query: 3   MATL-TSSMQANLLSHHSLSSSTSSSSSSSSSSSCSISFFPASFSLHFSALKVHALSSNT 62
           MATL TS++  N    +SLS+S + SS+ ++                        LSS  
Sbjct: 1   MATLCTSAINMNPNLTNSLSNSINLSSTPTN------------------------LSSLR 60

Query: 63  SAFFNSCKSFG---TIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKH 122
           S F NSC S G    +++   SR+  N   V MSWDG LSSVKLI+QG+NLE+++ V+ H
Sbjct: 61  STFTNSC-SLGLNVAVKSVQISRNKPNV--VCMSWDGPLSSVKLILQGRNLEVSDNVRSH 120

Query: 123 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 182
           VE+KVGK+V KHSHLVREVDVRLS RGG+  KGP++RRCEVTLFTK+HGV+RAEEDAE++
Sbjct: 121 VEDKVGKSVAKHSHLVREVDVRLSARGGDLSKGPKLRRCEVTLFTKRHGVIRAEEDAESL 180

Query: 183 YASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDED--EEV------ 242
           Y+SIDLVSSIIQRKLRKIK+K SDHGRHMKGF+R KVR+P P+ +  E+  EEV      
Sbjct: 181 YSSIDLVSSIIQRKLRKIKDKVSDHGRHMKGFNRSKVRDPEPVRITREEVLEEVESAPAP 240

Query: 243 FQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGG 302
              +  + I+E+VRTKYFDMPPLT+ EA+EQL+N+DHDFY FRNEETG+INILYKRK+GG
Sbjct: 241 VSVEDDDFIEEVVRTKYFDMPPLTITEAVEQLENVDHDFYAFRNEETGDINILYKRKEGG 300

Query: 303 YGLIIPKENGKAEKLEPVTVEAAREPSLAE 321
           YGLIIPK+ GK EKLE + V+  ++PS AE
Sbjct: 301 YGLIIPKD-GKTEKLESLPVQTDKQPSFAE 302

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BLAST of Cla007861 vs. Swiss-Prot
Match: HPF_SYNY3 (Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=hpf PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.2e-35
Identity = 86/204 (42.16%), Postives = 128/204 (62.75%), Query Frame = 1


Query: 100 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRI---RR 159
           +KL++QG N+ +TEA+  +VEEKV +AV+   +L  +VDV LSV      +  RI    +
Sbjct: 1   MKLLIQGNNITVTEAIHDYVEEKVERAVKHFQNLTTKVDVHLSV-----ARNARITNKHK 60

Query: 160 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK--DSDHGRHMKGFDRLK 219
            EVT++     V+RA+E +E +YASIDLV+  I R+LRK KE+  D  HG         +
Sbjct: 61  AEVTVYANGT-VIRAQEGSENLYASIDLVADKIARQLRKYKERIQDKQHGNVKTS----E 120

Query: 220 VREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRN 279
           + E  P+     +E +  +   E+  E++R KYF MPP+ +E+A+EQL+ +DHDFY FRN
Sbjct: 121 IVEDKPV-----EENLIGDRAPELPSEVLRMKYFAMPPMAIEDALEQLQLVDHDFYMFRN 180

Query: 280 EETGEINILYKRKDGGYGLIIPKE 299
           ++T EIN++Y R  GGYG+I P +
Sbjct: 181 KDTDEINVIYIRNHGGYGVIQPHQ 189

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BLAST of Cla007861 vs. Swiss-Prot
Match: HPF_SYNP2 (Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=hpf PE=2 SV=2)

HSP 1 Score: 141.4 bits (355), Expect = 1.8e-32
Identity = 79/199 (39.70%), Postives = 119/199 (59.80%), Query Frame = 1


Query: 100 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 159
           +KL++QG N+ +TE++  +VE K+ KA +       +VDV LSV      +     + EV
Sbjct: 1   MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANN--ARITDKHKAEV 60

Query: 160 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDHGRHMKG-FDRLKVREP 219
           T++     V+RA+E +E +YASIDLVS  I R+LRK KEK+     H++     +   +P
Sbjct: 61  TVYANGT-VIRAQEGSENLYASIDLVSDKIARQLRKYKEKNFGKKTHVQEKTSEVLPEDP 120

Query: 220 APIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETG 279
            P       + +  +   E+  E+VR KYF MPP+T++EA+EQL+ +DHDFY F N++T 
Sbjct: 121 VP-------DNLIGDRAPELPSEVVRMKYFAMPPMTIDEALEQLQLVDHDFYMFLNKDTN 180

Query: 280 EINILYKRKDGGYGLIIPK 298
            IN++Y R  GGYG+I P+
Sbjct: 181 AINVIYIRNHGGYGVIQPR 189

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BLAST of Cla007861 vs. Swiss-Prot
Match: HPF_DEIRA (Ribosome hibernation promotion factor OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=hpf PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.4e-21
Identity = 70/199 (35.18%), Postives = 116/199 (58.29%), Query Frame = 1


Query: 104 VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 163
           + G+N+E+TE ++++VEEK+ + + +++  + +  V L+VR  +     R  R EV L  
Sbjct: 6   LSGRNVEVTEPMREYVEEKLSR-LDRYTDQITDARVTLTVR--DVRNNERRNRVEVQL-N 65

Query: 164 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVR-EPAPIV 223
              G++RAEE    +YA+ID  S +++R+LRK K       R+MK   R + R EP P  
Sbjct: 66  VPGGIIRAEEHHADMYAAIDKASDVLERQLRKFKT------RYMK--QRQEGRPEPLP-- 125

Query: 224 VGDEDEEVFQEDGGEVID-------EIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNE 283
            G  + EV  +  G  +D       EIVR K F++ P++ E+A+ Q++ + HDFY F++ 
Sbjct: 126 -GPAEAEVNAQGSGAAMDDVSEFHPEIVRQKRFELRPMSAEDAVVQMEALGHDFYVFQDL 185

Query: 284 ETGEINILYKRKDGGYGLI 295
           + G+  ++Y+R+DG YGLI
Sbjct: 186 Q-GQTGVVYRRRDGHYGLI 188

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BLAST of Cla007861 vs. Swiss-Prot
Match: HPF_STAS1 (Ribosome hibernation promotion factor OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=hpf PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 9.1e-21
Identity = 65/198 (32.83%), Postives = 112/198 (56.57%), Query Frame = 1


Query: 100 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 159
           ++  + G+NL +T+A++ ++EEK+GK ++++ + V      + V+  +        + EV
Sbjct: 2   IRFEIHGENLTITDAIRNYIEEKIGK-LERYFNDVPNATAHVKVKTYQNSA----TKIEV 61

Query: 160 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDHGRH---MKGFDRLKVR 219
           T+  KK   +RAEE  + +YA IDL+++ ++R++RK K + +   R+    + F  L   
Sbjct: 62  TIPLKKV-TLRAEERNDDLYAGIDLINNKLERQVRKYKTRVNRRNRNRGEQEAFASLPEE 121

Query: 220 EPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEE 279
           + A  +  DE+E        E+  EI+R K F + P+  EEA+ Q+  + HDF+ F + E
Sbjct: 122 KEAVEIQNDENEA-----DNEI--EIIRAKNFSLKPMDSEEAVLQMDLLGHDFFIFTDRE 181

Query: 280 TGEINILYKRKDGGYGLI 295
           T   +I+YKRKDG YGLI
Sbjct: 182 TDGTSIVYKRKDGKYGLI 186

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BLAST of Cla007861 vs. TrEMBL
Match: A0A061G1K9_THECC (Plastid-specific 30S ribosomal protein 1 OS=Theobroma cacao GN=TCM_015512 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 2.7e-112
Identity = 230/332 (69.28%), Postives = 252/332 (75.90%), Query Frame = 1


Query: 1   MVMATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSCSISFFPASFSLHFSALKVHALSSN 60
           M  A L SS  +    HH +S S SSSS  SSS+S    F P          ++ +L S 
Sbjct: 1   MATALLASSQTS---FHHPISVSVSSSSCHSSSASSVSLFTPTK-------PRIPSLPSY 60

Query: 61  TSAFFNSC-KSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHV 120
            S+F N    SF  IET  R      S  VRMSWDG LSSVKLI+QGKNLELT+ VK+HV
Sbjct: 61  KSSFLNPIGNSFKDIETEPRKSRVC-SLTVRMSWDGPLSSVKLIIQGKNLELTDTVKQHV 120

Query: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180
           EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY
Sbjct: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180

Query: 181 ASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEV--------- 240
            SIDLVSSI+QRKLRKIKEK+SDHGRHMKGF+RLKVREP  ++V DE E V         
Sbjct: 181 GSIDLVSSILQRKLRKIKEKESDHGRHMKGFNRLKVREPVAVLVEDEVEAVPEQEDDVEA 240

Query: 241 --FQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKD 300
              QED G +IDEIVRTKYFDMPPLTV EAIEQL+N+DHDFYGFRNEETGEINILYKRK 
Sbjct: 241 VPEQEDDG-LIDEIVRTKYFDMPPLTVSEAIEQLENVDHDFYGFRNEETGEINILYKRKA 300

Query: 301 GGYGLIIPKENGKAEKLEPVTVEAAREPSLAE 321
           GGYGLIIPK NGKAEKLEPV V++A++ S  E
Sbjct: 301 GGYGLIIPKGNGKAEKLEPVVVDSAKQHSFVE 320

[Close]

BLAST of Cla007861 vs. TrEMBL
Match: A0A067LAT5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17075 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 2.5e-110
Identity = 214/318 (67.30%), Postives = 247/318 (77.67%), Query Frame = 1


Query: 3   MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSCSISFFPASFSLHFSALKVHALSSNTS 62
           MATL  S+Q +   HH   S +S +++++SSSS  +        L    L+  + SS+ +
Sbjct: 1   MATLLGSLQTSF--HHPSVSLSSKAAATTSSSSIYV--------LSSKNLRFPSFSSHKT 60

Query: 63  AFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEK 122
           +F N       IE     R    S  VRMSWDG LSSVKLI+QGKNLELT+ VK HVE+K
Sbjct: 61  SFLNPLSDVKCIEV----RRGRRSPTVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEDK 120

Query: 123 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASI 182
           VGKAVQKHSHLVREVDVRLSVRGGE G+GPRIRRCEVTLFTKKHGV+RAEEDAET+YASI
Sbjct: 121 VGKAVQKHSHLVREVDVRLSVRGGELGRGPRIRRCEVTLFTKKHGVIRAEEDAETIYASI 180

Query: 183 DLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEI 242
           DL SSI+QRKLRKIKEK+SDHGRHMKGF+RLKVREP  +VV D+ +EV Q +  E IDE+
Sbjct: 181 DLASSILQRKLRKIKEKESDHGRHMKGFNRLKVREPVEVVVKDDADEVPQTEEVEYIDEV 240

Query: 243 VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKA 302
           VRTKYFDMPPLTV EAIEQL+N+DHDFYGFRNEETGEINI+YKRK GGYGLIIPK  G A
Sbjct: 241 VRTKYFDMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGLIIPKGEGGA 300

Query: 303 EKLEPVTVEAAREPSLAE 321
           EK+E + VE AREPSL E
Sbjct: 301 EKMETLVVEPAREPSLTE 304

[Close]

BLAST of Cla007861 vs. TrEMBL
Match: A0A0A0LMH1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G337790 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 4.3e-110
Identity = 209/245 (85.31%), Postives = 224/245 (91.43%), Query Frame = 1


Query: 3   MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSCSISFFPASFSLHFSALKVHALSSNTS 62
           MATLTSSMQANLLS HSLS    SSS+        +S+FPASFSLHFSALKVHALSSN S
Sbjct: 1   MATLTSSMQANLLSDHSLSPPFHSSST--------VSYFPASFSLHFSALKVHALSSNAS 60

Query: 63  AFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEK 122
           AFFNSCK+FGTIET SR+RHASNSF++RM+WDG LSSVKLIVQGKNLELTEAVKKHVEEK
Sbjct: 61  AFFNSCKNFGTIETASRNRHASNSFSIRMTWDGPLSSVKLIVQGKNLELTEAVKKHVEEK 120

Query: 123 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASI 182
           VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV+ASI
Sbjct: 121 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVFASI 180

Query: 183 DLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEI 242
           DLVSSIIQRKLRKIKEKDSD GRH+KGFDR KVREPAPIVV DE+EEVFQEDGGEVIDE+
Sbjct: 181 DLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEV 237

Query: 243 VRTKY 248
           + + +
Sbjct: 241 IPSTF 237

[Close]

BLAST of Cla007861 vs. TrEMBL
Match: B9SEK8_RICCO (Plastid-specific 30S ribosomal protein 1, chloroplast, putative OS=Ricinus communis GN=RCOM_0969810 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 4.3e-110
Identity = 219/321 (68.22%), Postives = 250/321 (77.88%), Query Frame = 1


Query: 3   MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSCSISFFPASFSLHFSALKVHALSSNTS 62
           M TL  S+Q    +   +S S  +++SSS SS C +     S  L   +    +LSS TS
Sbjct: 1   MTTLLGSLQTTFHNLPRVSLSPKAATSSSCSSICILG----SKKLRLPSF---SLSSKTS 60

Query: 63  AFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEK 122
            F N  K    ++     R   ++  VRMSW+G LSSVKLI QGKNLELT+ VKKHVE+K
Sbjct: 61  -FLNPLKLGSNVKYFENKRGRRSA--VRMSWEGPLSSVKLITQGKNLELTDTVKKHVEDK 120

Query: 123 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASI 182
           VGKAVQKHSHLVREVDVRLSVRGGEFGKGP+IRRCEVTLFTKKHGV+RAEEDAET+YASI
Sbjct: 121 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPKIRRCEVTLFTKKHGVIRAEEDAETIYASI 180

Query: 183 DLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEE---VFQEDGGEVI 242
           DLVSSIIQRKLRKIKEK SDHGRHMKGF+RLKVREP    V D+ +E   V  ++  + I
Sbjct: 181 DLVSSIIQRKLRKIKEKVSDHGRHMKGFNRLKVREPVAEPVKDDTDEVDGVLGDEDEDYI 240

Query: 243 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEN 302
           DE+VRTKYFDMPPLTV EAIEQLKN+DHDFYGFRNEETGEINI+YKRK GGYG+IIPKEN
Sbjct: 241 DEVVRTKYFDMPPLTVSEAIEQLKNVDHDFYGFRNEETGEINIIYKRKAGGYGIIIPKEN 300

Query: 303 GKAEKLEPVTVEAAREPSLAE 321
           GKAEKLEPV +E AREPS+AE
Sbjct: 301 GKAEKLEPVVIEPAREPSIAE 311

[Close]

BLAST of Cla007861 vs. TrEMBL
Match: A0A0B0MSM5_GOSAR (30S ribosomal 1, chloroplastic OS=Gossypium arboreum GN=F383_30426 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 1.1e-108
Identity = 219/329 (66.57%), Postives = 249/329 (75.68%), Query Frame = 1


Query: 5   TLTSSMQANLLSHHSLSSSTSSSSSSSSSSSCSISFFPASFSLHFSALKVHALSSNTSAF 64
           TL +S Q +   HH LS S SS SS SSSSS SIS F        +  ++ +L S  S+F
Sbjct: 4   TLLASSQTSF--HHPLSVSDSSFSSPSSSSS-SISMFT------LTKPRIPSLPSYKSSF 63

Query: 65  FNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEKVG 124
           FN   ++         +  ++S  VRMSWDG L+SVKLI+QGKNLELT+ VK+HVEEKVG
Sbjct: 64  FNPIGNYFKCVEMEPRKIRNSSLTVRMSWDGPLASVKLIIQGKNLELTDTVKQHVEEKVG 123

Query: 125 KAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDL 184
           KAVQKHSHLVREVDVRLSVRGGE GKGPRIRRCEVTLFTKKHGVVRAEEDAETVY SIDL
Sbjct: 124 KAVQKHSHLVREVDVRLSVRGGELGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYGSIDL 183

Query: 185 VSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDE-------------EVF 244
           VSSI+QRKLRKIKEK+SD GRHMKGF R KVREP  +VV D+ E              V 
Sbjct: 184 VSSILQRKLRKIKEKESDRGRHMKGFSRSKVREPVAVVVDDDAEAVPEQVVADDDVAAVP 243

Query: 245 QEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGY 304
           +++    IDEIVRTKYF+MPPLTV EA+EQL+N+DHDFYGFRNEETGEINILYKRK GGY
Sbjct: 244 EQEDDSFIDEIVRTKYFEMPPLTVSEAVEQLENVDHDFYGFRNEETGEINILYKRKAGGY 303

Query: 305 GLIIPKENGKAEKLEPVTVEAAREPSLAE 321
           GLIIPK NGKAEKLEP+ VE+A+E S  E
Sbjct: 304 GLIIPKGNGKAEKLEPLVVESAKEHSYVE 323

[Close]

BLAST of Cla007861 vs. NCBI nr
Match: gi|449459188|ref|XP_004147328.1| (PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus])

HSP 1 Score: 557.0 bits (1434), Expect = 2.2e-155
Identity = 285/318 (89.62%), Postives = 297/318 (93.40%), Query Frame = 1


Query: 3   MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSCSISFFPASFSLHFSALKVHALSSNTS 62
           MATLTSSMQANLLS HSLS    SSS+        +S+FPASFSLHFSALKVHALSSN S
Sbjct: 1   MATLTSSMQANLLSDHSLSPPFHSSST--------VSYFPASFSLHFSALKVHALSSNAS 60

Query: 63  AFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEK 122
           AFFNSCK+FGTIET SR+RHASNSF++RM+WDG LSSVKLIVQGKNLELTEAVKKHVEEK
Sbjct: 61  AFFNSCKNFGTIETASRNRHASNSFSIRMTWDGPLSSVKLIVQGKNLELTEAVKKHVEEK 120

Query: 123 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASI 182
           VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV+ASI
Sbjct: 121 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVFASI 180

Query: 183 DLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEI 242
           DLVSSIIQRKLRKIKEKDSD GRH+KGFDR KVREPAPIVV DE+EEVFQEDGGEVIDEI
Sbjct: 181 DLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEI 240

Query: 243 VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKA 302
           VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG A
Sbjct: 241 VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGTA 300

Query: 303 EKLEPVTVEAAREPSLAE 321
           EKLEPVT+EA REPSLAE
Sbjct: 301 EKLEPVTIEATREPSLAE 310

[Close]

BLAST of Cla007861 vs. NCBI nr
Match: gi|659121787|ref|XP_008460813.1| (PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo])

HSP 1 Score: 555.8 bits (1431), Expect = 4.8e-155
Identity = 285/318 (89.62%), Postives = 296/318 (93.08%), Query Frame = 1


Query: 3   MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSCSISFFPASFSLHFSALKVHALSSNTS 62
           MATLTSSMQANLLS HSL     SSS+        +S+FPA FSLHFSALKVHALSSN S
Sbjct: 1   MATLTSSMQANLLSDHSLPPPHPSSST--------VSYFPAPFSLHFSALKVHALSSNAS 60

Query: 63  AFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEK 122
           AFFNSCK+FGTIET SR+RHASNSF++RM+WDGHLSSVKLIVQGKNLELTEAVKKHVEEK
Sbjct: 61  AFFNSCKNFGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNLELTEAVKKHVEEK 120

Query: 123 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASI 182
           VGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+ASI
Sbjct: 121 VGKAVQKHSHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHGVVRAEEDAETVFASI 180

Query: 183 DLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEI 242
           DLVSSIIQRKLRKIKEKDSD GRH+KGFDR KVREPAPIVV DE+EEVFQEDGGEVIDEI
Sbjct: 181 DLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEI 240

Query: 243 VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKA 302
           VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG A
Sbjct: 241 VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGTA 300

Query: 303 EKLEPVTVEAAREPSLAE 321
           EKLEPVTVEAAREPSLAE
Sbjct: 301 EKLEPVTVEAAREPSLAE 310

[Close]

BLAST of Cla007861 vs. NCBI nr
Match: gi|590674564|ref|XP_007039204.1| (Plastid-specific 30S ribosomal protein 1 [Theobroma cacao])

HSP 1 Score: 413.3 bits (1061), Expect = 3.9e-112
Identity = 230/332 (69.28%), Postives = 252/332 (75.90%), Query Frame = 1


Query: 1   MVMATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSCSISFFPASFSLHFSALKVHALSSN 60
           M  A L SS  +    HH +S S SSSS  SSS+S    F P          ++ +L S 
Sbjct: 1   MATALLASSQTS---FHHPISVSVSSSSCHSSSASSVSLFTPTK-------PRIPSLPSY 60

Query: 61  TSAFFNSC-KSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHV 120
            S+F N    SF  IET  R      S  VRMSWDG LSSVKLI+QGKNLELT+ VK+HV
Sbjct: 61  KSSFLNPIGNSFKDIETEPRKSRVC-SLTVRMSWDGPLSSVKLIIQGKNLELTDTVKQHV 120

Query: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180
           EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY
Sbjct: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180

Query: 181 ASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEV--------- 240
            SIDLVSSI+QRKLRKIKEK+SDHGRHMKGF+RLKVREP  ++V DE E V         
Sbjct: 181 GSIDLVSSILQRKLRKIKEKESDHGRHMKGFNRLKVREPVAVLVEDEVEAVPEQEDDVEA 240

Query: 241 --FQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKD 300
              QED G +IDEIVRTKYFDMPPLTV EAIEQL+N+DHDFYGFRNEETGEINILYKRK 
Sbjct: 241 VPEQEDDG-LIDEIVRTKYFDMPPLTVSEAIEQLENVDHDFYGFRNEETGEINILYKRKA 300

Query: 301 GGYGLIIPKENGKAEKLEPVTVEAAREPSLAE 321
           GGYGLIIPK NGKAEKLEPV V++A++ S  E
Sbjct: 301 GGYGLIIPKGNGKAEKLEPVVVDSAKQHSFVE 320

[Close]

BLAST of Cla007861 vs. NCBI nr
Match: gi|802542005|ref|XP_012080892.1| (PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Jatropha curcas])

HSP 1 Score: 406.8 bits (1044), Expect = 3.6e-110
Identity = 214/318 (67.30%), Postives = 247/318 (77.67%), Query Frame = 1


Query: 3   MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSCSISFFPASFSLHFSALKVHALSSNTS 62
           MATL  S+Q +   HH   S +S +++++SSSS  +        L    L+  + SS+ +
Sbjct: 1   MATLLGSLQTSF--HHPSVSLSSKAAATTSSSSIYV--------LSSKNLRFPSFSSHKT 60

Query: 63  AFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEK 122
           +F N       IE     R    S  VRMSWDG LSSVKLI+QGKNLELT+ VK HVE+K
Sbjct: 61  SFLNPLSDVKCIEV----RRGRRSPTVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEDK 120

Query: 123 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASI 182
           VGKAVQKHSHLVREVDVRLSVRGGE G+GPRIRRCEVTLFTKKHGV+RAEEDAET+YASI
Sbjct: 121 VGKAVQKHSHLVREVDVRLSVRGGELGRGPRIRRCEVTLFTKKHGVIRAEEDAETIYASI 180

Query: 183 DLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEI 242
           DL SSI+QRKLRKIKEK+SDHGRHMKGF+RLKVREP  +VV D+ +EV Q +  E IDE+
Sbjct: 181 DLASSILQRKLRKIKEKESDHGRHMKGFNRLKVREPVEVVVKDDADEVPQTEEVEYIDEV 240

Query: 243 VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKA 302
           VRTKYFDMPPLTV EAIEQL+N+DHDFYGFRNEETGEINI+YKRK GGYGLIIPK  G A
Sbjct: 241 VRTKYFDMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGLIIPKGEGGA 300

Query: 303 EKLEPVTVEAAREPSLAE 321
           EK+E + VE AREPSL E
Sbjct: 301 EKMETLVVEPAREPSLTE 304

[Close]

BLAST of Cla007861 vs. NCBI nr
Match: gi|255566888|ref|XP_002524427.1| (PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Ricinus communis])

HSP 1 Score: 406.0 bits (1042), Expect = 6.2e-110
Identity = 219/321 (68.22%), Postives = 250/321 (77.88%), Query Frame = 1


Query: 3   MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSCSISFFPASFSLHFSALKVHALSSNTS 62
           M TL  S+Q    +   +S S  +++SSS SS C +     S  L   +    +LSS TS
Sbjct: 1   MTTLLGSLQTTFHNLPRVSLSPKAATSSSCSSICILG----SKKLRLPSF---SLSSKTS 60

Query: 63  AFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEK 122
            F N  K    ++     R   ++  VRMSW+G LSSVKLI QGKNLELT+ VKKHVE+K
Sbjct: 61  -FLNPLKLGSNVKYFENKRGRRSA--VRMSWEGPLSSVKLITQGKNLELTDTVKKHVEDK 120

Query: 123 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASI 182
           VGKAVQKHSHLVREVDVRLSVRGGEFGKGP+IRRCEVTLFTKKHGV+RAEEDAET+YASI
Sbjct: 121 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPKIRRCEVTLFTKKHGVIRAEEDAETIYASI 180

Query: 183 DLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEE---VFQEDGGEVI 242
           DLVSSIIQRKLRKIKEK SDHGRHMKGF+RLKVREP    V D+ +E   V  ++  + I
Sbjct: 181 DLVSSIIQRKLRKIKEKVSDHGRHMKGFNRLKVREPVAEPVKDDTDEVDGVLGDEDEDYI 240

Query: 243 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEN 302
           DE+VRTKYFDMPPLTV EAIEQLKN+DHDFYGFRNEETGEINI+YKRK GGYG+IIPKEN
Sbjct: 241 DEVVRTKYFDMPPLTVSEAIEQLKNVDHDFYGFRNEETGEINIIYKRKAGGYGIIIPKEN 300

Query: 303 GKAEKLEPVTVEAAREPSLAE 321
           GKAEKLEPV +E AREPS+AE
Sbjct: 301 GKAEKLEPVVIEPAREPSIAE 311

The following BLAST results are available for this feature:

BLAST of Cla007861 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PRSP1_SPIOL	1.8e-93	58.18	Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea GN=PSRP1 PE=1 ...	[more]
HPF_SYNY3	2.2e-35	42.16	Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Ka...	[more]
HPF_SYNP2	1.8e-32	39.70	Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / ...	[more]
HPF_DEIRA	1.4e-21	35.18	Ribosome hibernation promotion factor OS=Deinococcus radiodurans (strain ATCC 13...	[more]
HPF_STAS1	9.1e-21	32.83	Ribosome hibernation promotion factor OS=Staphylococcus saprophyticus subsp. sap...	[more]

BLAST of Cla007861 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061G1K9_THECC	2.7e-112	69.28	Plastid-specific 30S ribosomal protein 1 OS=Theobroma cacao GN=TCM_015512 PE=4 S...	[more]
A0A067LAT5_JATCU	2.5e-110	67.30	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17075 PE=4 SV=1	[more]
A0A0A0LMH1_CUCSA	4.3e-110	85.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G337790 PE=4 SV=1	[more]
B9SEK8_RICCO	4.3e-110	68.22	Plastid-specific 30S ribosomal protein 1, chloroplast, putative OS=Ricinus commu...	[more]
A0A0B0MSM5_GOSAR	1.1e-108	66.57	30S ribosomal 1, chloroplastic OS=Gossypium arboreum GN=F383_30426 PE=4 SV=1	[more]

BLAST of Cla007861 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459188\|ref\|XP_004147328.1\|	2.2e-155	89.62	PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus]	[more]
gi\|659121787\|ref\|XP_008460813.1\|	4.8e-155	89.62	PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo]	[more]
gi\|590674564\|ref\|XP_007039204.1\|	3.9e-112	69.28	Plastid-specific 30S ribosomal protein 1 [Theobroma cacao]	[more]
gi\|802542005\|ref\|XP_012080892.1\|	3.6e-110	67.30	PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Jatropha curcas]	[more]
gi\|255566888\|ref\|XP_002524427.1\|	6.2e-110	68.22	PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003489	RHF/RaiA

Vocabulary: **Biological Process**
Term	Definition
GO:0044238	primary metabolic process

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla007861	Cla007861	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla007861	Cla007861.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla007861.1.cds5	Cla007861.1.cds5	CDS
Cla007861.1.cds4	Cla007861.1.cds4	CDS
Cla007861.1.cds3	Cla007861.1.cds3	CDS
Cla007861.1.cds2	Cla007861.1.cds2	CDS
Cla007861.1.cds1	Cla007861.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003489	Ribosomal protein S30Ae/sigma 54 modulation protein	GENE3D	G3DSA:3.30.160.100		coord: 101..199 score: 1.1
IPR003489	Ribosomal protein S30Ae/sigma 54 modulation protein	PFAM	PF02482	Ribosomal_S30AE	coord: 103..199 score: 3.6
IPR003489	Ribosomal protein S30Ae/sigma 54 modulation protein	TIGRFAMs	TIGR00741	TIGR00741	coord: 101..204 score: 6.3
IPR003489	Ribosomal protein S30Ae/sigma 54 modulation protein	unknown	SSF69754	Ribosome binding protein Y (YfiA homologue)	coord: 101..206 score: 1.03
None	No IPR available	PANTHER	PTHR33231	FAMILY NOT NAMED	coord: 28..312 score: 1.8E
None	No IPR available	PANTHER	PTHR33231:SF1	30S RIBOSOMAL PROTEIN-RELATED	coord: 28..312 score: 1.8E