Cla007435.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007435
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	La-related protein 1 (Fragment) (AHRD V1 *--- F1KRI5_ASCSU); contains Interpro domain(s) IPR006630 RNA-binding protein Lupus La
Location	Chr5 : 23291237 .. 23295875 (+)
Sequence length	1629

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGGCTACCGACTATTCGTCTAATCATCGTTCGCCAAGTGGAACTGGTTTTACCGGCGATAACATCAACAGCTCCGAGTTTCGGCGGAAGAATCTTCAGTCTCCGTGGGCTCAAGTCGTCCGAGGTGAGCCAGAATCGATCTCACCCGTCGATCAGTCCCAGCTGTCGTCGTCCTCGTCATCGCTGTCTTCGCTGGCGGTTTCTGCTACAGAAACCCCCGTTCCTGCTTCACCGCCGACCGATAACTTTACATCTTCCGAGAACTACGACGCAAATGACGGTAATGCGACGGCTACGTCAAAGAAGCAGGCTTGGAATAAGCCTTCAAATGGGGTCGTTGAGGGTGGTTCTGTAATGGGGGCAGACTCTTGGCCTGCTCTTGCGGAGTCCGCGAGGGCTTCACCCAAATTAGCGCTCGATTCTCCTCCGAAGCCTACCATCGAAGTATCAGTCCCTCCTTCGCAGGTTTGGTGATGTTACTTCTGATAACGTCATATTTAGTTCTCCAAAACATTGGATGGATGATTATTGAGGAGATTAATAGAATTCTCCAATGGTTTTTCAATGGCGTCGTTTTTTTATTATTCTTATTCATGATATTGAAACTCTAGCCTTCGAGAAATGTAGTTGTGTGCATTTAGGTTTTATGCTATAGAATGTAGAATGGGACTGTACTATGTTGTGAATTTCAATCATGTCAGTATAATTTTCTAACTGTCTTATTGGCCAAATGTTTCCTCACGGTTTAATGGTTATTCAATATGCTTGTGCATGATGTAGTCTATCTTGTGTTTTGCGATCAGGGACCTATCAATGTACCTCCTCAGCGGCAAGCTACAAATAATGCCAAATCGAACCCGAGTCTGAAACATCCAGTGGTTGCTCGACAAAGATCCTCAAGGCGGGGTGGTGGTGTTGGTGGCAGCTCAGTGGGAGGGTCTGGACGAGGATTTTATCGCCCTTCGCCACCTCCACCACCACCTCCCCCACCACCTTTTCCTGTATTTCAAATCCCTGCAAGTAGTTATTGTAACCTGATACCAGCAATTCATGATCCTTCTTCAGGAGAACCACTGTTCAGGAGCAATAATTGGGATCCGCGGGCTGTTGCAGGCTTTGTGCCTCAAATAAATTTTGCTACTGATCACCGAAACTTCTTTCCTAGGGGGAATTTAGCCCTCCATCCTCGTGGTGACAGTCACTATCATAACAATCGTGGGGGAAAACGTGGTCAAGATCGTGGAATGTATCCTAATGCTCGAGATGCTCATTTTCAGCAGCACAGGCCTCATACTAGAGGCTTTATGAGGCCTTTGCCACCTTACACTGCTCAGTTTCCCCAGGCTGTTAGACCTCATGGGAATCCTATGCCTCCTCCAGGTGGGTGTCTTTCGAGGGACTAACGATGACAGTAGCTGTATAATTTTTAAATGTGATTTTAATTTGTTCTTTATTTTGATCAGAGTTTGTCTATGTCCCTACATTGCCCTTGGAGCCTTACAGAGGCATGTCTTTCATGCCACGACCTGCAATGAACTATCCTGCTGTAGATCCCACTCTATCTGCATCACTAGTTAAGCAGATTGAATATTATTTCAGGTAATATGGTTTACGATACGAAGGAACCACTTGGTTCTTGGTTGTTCCTTTCATCATTACTGATTACAACTGTGCATTCCTGTCTATGCTATTTTGCAGCGATGGTAATTTGGTAAAAGATGATTATTTAAGGTCCCAGATGGACGATCAAGGCTGGGTGCCACTTTCTCTGATAGCTACTTTTCCTATGGTAAGTTCTGATGATAATTCTGCTGTTCTTTACGAGAATAAAGAAAGTTAAATATATAAGATGTAGTAAATTTACTTGTTAATGAATTACTTATTAGAAGGGCAAGAGTTTATTTCGGTAATGTGTATTTAATATTTAAAGATGTGGATATGGATACTTTTTTAAGGCAAGAAACAACGTAAAATGAGATGAAAAGTTGTGATCTAAGCTCTAGGAAATTTGTCAATAGGAAACATAATGCTTTCCAACAAACCATTTTTAGCTTTAATTTAGTCTCCTTAGAAATCAAGGACACAATTGTACAACCTATAGAACAGATCTGTTCAAGTAACATTTTGTGCATAACAGAAATTCTGGAGTTTTCTTGTTAATTTATCATTTAGTGTGTTCTTTGTCATTTAATAAATGGTAATTCTCTTCTGCTTGTAACTTTTTACTGTATCAAAAACAAAAAGGAAGAAGAAAGGATCCCTTAAATGAGTTATGTTTAAGTGCGGGTACAGTTATATACCTGGTGAAGAAGAAAAATCTCCTTTAGCTACCGTGTGAAAGTATCAGATGTTGCATGATATTGATTTAGACTGCTTATAAAAACTTAGTTTTACTGTTTGTTTTTAACAAAAGTGATTCTTATGAAACGGCCATACTTGAACAAGATTTGTTCTATAGGTTGTACAACTTAGTCCTTGAGTTCTAAAGAAAGTCATTCTTATGAAATTTTTATGAAGGAAGAAATTGGTTAGTCAACAAGGTTTTTGAAAGAAACAACTCTTTCTTATATCAATATTAATTGAAGTGTTAATTGAATTGTAAACTTGTGGTTAAATTTACCAAGCATGAAGTAGACCTAGGTTTGCTAAAATTGTTGATTATTCAGTCTTAAAAGTCTTAAGAATTCAAATTAGGGATTGATTAAAGTCATCTTTTCAAACAATCTTATTTTAAAGCTACCTGCAAGCAGTGTGGAGGGTTTGAAGACGGAGAATGACTAATTTTTTTCTATATTTTGTTTGAGTTGATGAATTGGTGATCTTTTGACTGAGTGGAGAACGTATAATTGAATTTAATGAACACCCAAGTTAACTATACTTGTTTGACAATCAATTTAATTGGTTCAAAGACACCAAACTAAGCATAATTCGATGCTATCTGTCAGAAAATATGATTTTAAGGTGATAGCCTGCACAGCTTGAGGCTAGGGTGCTTTAAAGAAAATAATGAGTGATTAAGGACGGTGGTAGTGGTAATTTTTTTCCCTTTCTAGATTATTTTGGTGAGATACTTGAAAGTCAATGTGATCATTCCACTAGCTATTTTTGTTTTTCATACTTGTAATTTTCTTTCTAAAATGTGCTTCTGGTTAGAATAAGGCTATTGATTTATAGCAGCATTTTTATGTGATTATACATGCAATCTTTGGTCTTTAATGGCCAAACGATTTCAATATCTAATTAGGGCTATAGTTTACATCACGCAATTTCATCCTTTTCTCTTATTTAACTTACCGTCTCTACCTATATTGTTTCTATTGGTTTTTATTCTTTATTCCTCTGTATTAGAAACGAGAGTTCAGCTTCATTGAGTTAAACTGTTCTTGTCAACAAGAAGACAATGGAAAAAAAAGTTACATTTTGGTTAGAGTGGTGTTTAGTGGTAAAATTTGGTTTCTTGATCTTGCTTAACCAGGAAGCTTACATATCTTCTCTTCTGCGCATTTCAAACAATCTTGAGCATAGCTTACATGAGTTTCTTTTCTTGTATTTTCAGAAAAATAAGGCTGCATTATAACTTTTAGTGTACTCTGTAAATTCAAGTTTTTTTAACCTCCAGAGTCCAGTGTGTGTTATACAGGTTGTCACTTGTCTATGCTATAATAAATCACTTGTCTCTGCTATAATAAATGAGTTTTTATATTCATAGATGTGGCGTCTGCTTAAATTAATTTTGAATGTTTATACTAATAACACTTTTTGTTGTTATAAAGGAACAACACTGCTTTTGTTATGATCATAACTTTTTTCCTGTGATTTTCCCACAGCTTGTTCAACCAAAATAATAGCTCGTTCAAATGACTTGTTAGTAAGAAAAATCAGGTGTTTGGAGCAATGAGTGGAGTTGTTAAGTTTGAGGAGTGGATAGTCATGGGCCCACAGTGTAATGAGTTATAACTTATGGAATGGATGTTTTCTAGTCAGGTAGTAAGTTTAAGAACTCCTTGGGCTAAACAAGGCAACTCCACTCCTCCCGACTCTTACTCCTTGGAGCAAAATGTTTGGTTTATTTTTTTACTTGATTCAGCAGTTCAGTGATTTATGTAGAATGAATTGAAAACACTATTTTGGTTGATTGCTGCGTTTATACTTTTGCTTTTGCAGGTAATGAGTTTGACAAACAATATTCAATGGATAGTAGAATCCTTAAGAACGTCAACTGAAGTGGAAGTGCAGGTTAGTTTTCATATCCGGCTATGAGATTAATCCTATTCAATATTCCCATTCAATGTATTTTGAGTTTCGCCCTAGTTGTCCTGCTGGCCTAATTTTTCTGCTGAAATTGTTGCAGGATAATAGGGTCAGACGGCGAAATGAGTGGAAGAAATGGGCAACAAAAGCCAATTGGTTTAGAACTGAATTGGTCTCTTCTACTCCAAGTGGATCAGGTCATGATAGTCTAGCAACTTCTTTTCAAAGGGTCAGAGTGGATGAAGGTATGAATCAAAGTATGACTAGTGATAGTGATCCTCATAATACCAAGCGTACTACTGAGATACAACCTTCCGAGTCAGGTGATCGTTCGCAACTTACTAATGGGGAGGTGAATCAGGATGTTCAAACTGATATCTGA

mRNA sequence

ATGGGGAAGGCTACCGACTATTCGTCTAATCATCGTTCGCCAAGTGGAACTGGTTTTACCGGCGATAACATCAACAGCTCCGAGTTTCGGCGGAAGAATCTTCAGTCTCCGTGGGCTCAAGTCGTCCGAGGTGAGCCAGAATCGATCTCACCCGTCGATCAGTCCCAGCTGTCGTCGTCCTCGTCATCGCTGTCTTCGCTGGCGGTTTCTGCTACAGAAACCCCCGTTCCTGCTTCACCGCCGACCGATAACTTTACATCTTCCGAGAACTACGACGCAAATGACGGTAATGCGACGGCTACGTCAAAGAAGCAGGCTTGGAATAAGCCTTCAAATGGGGTCGTTGAGGGTGGTTCTGTAATGGGGGCAGACTCTTGGCCTGCTCTTGCGGAGTCCGCGAGGGCTTCACCCAAATTAGCGCTCGATTCTCCTCCGAAGCCTACCATCGAAGTATCAGTCCCTCCTTCGCAGGGACCTATCAATGTACCTCCTCAGCGGCAAGCTACAAATAATGCCAAATCGAACCCGAGTCTGAAACATCCAGTGGTTGCTCGACAAAGATCCTCAAGGCGGGGTGGTGGTGTTGGTGGCAGCTCAGTGGGAGGGTCTGGACGAGGATTTTATCGCCCTTCGCCACCTCCACCACCACCTCCCCCACCACCTTTTCCTGTATTTCAAATCCCTGCAAGTAGTTATTGTAACCTGATACCAGCAATTCATGATCCTTCTTCAGGAGAACCACTGTTCAGGAGCAATAATTGGGATCCGCGGGCTGTTGCAGGCTTTGTGCCTCAAATAAATTTTGCTACTGATCACCGAAACTTCTTTCCTAGGGGGAATTTAGCCCTCCATCCTCGTGGTGACAGTCACTATCATAACAATCGTGGGGGAAAACGTGGTCAAGATCGTGGAATGTATCCTAATGCTCGAGATGCTCATTTTCAGCAGCACAGGCCTCATACTAGAGGCTTTATGAGGCCTTTGCCACCTTACACTGCTCAGTTTCCCCAGGCTGTTAGACCTCATGGGAATCCTATGCCTCCTCCAGAGTTTGTCTATGTCCCTACATTGCCCTTGGAGCCTTACAGAGGCATGTCTTTCATGCCACGACCTGCAATGAACTATCCTGCTGTAGATCCCACTCTATCTGCATCACTAGTTAAGCAGATTGAATATTATTTCAGCGATGGTAATTTGGTAAAAGATGATTATTTAAGGTCCCAGATGGACGATCAAGGCTGGGTGCCACTTTCTCTGATAGCTACTTTTCCTATGGTAATGAGTTTGACAAACAATATTCAATGGATAGTAGAATCCTTAAGAACGTCAACTGAAGTGGAAGTGCAGGATAATAGGGTCAGACGGCGAAATGAGTGGAAGAAATGGGCAACAAAAGCCAATTGGTTTAGAACTGAATTGGTCTCTTCTACTCCAAGTGGATCAGGTCATGATAGTCTAGCAACTTCTTTTCAAAGGGTCAGAGTGGATGAAGGTATGAATCAAAGTATGACTAGTGATAGTGATCCTCATAATACCAAGCGTACTACTGAGATACAACCTTCCGAGTCAGGTGATCGTTCGCAACTTACTAATGGGGAGGTGAATCAGGATGTTCAAACTGATATCTGA

Coding sequence (CDS)

ATGGGGAAGGCTACCGACTATTCGTCTAATCATCGTTCGCCAAGTGGAACTGGTTTTACCGGCGATAACATCAACAGCTCCGAGTTTCGGCGGAAGAATCTTCAGTCTCCGTGGGCTCAAGTCGTCCGAGGTGAGCCAGAATCGATCTCACCCGTCGATCAGTCCCAGCTGTCGTCGTCCTCGTCATCGCTGTCTTCGCTGGCGGTTTCTGCTACAGAAACCCCCGTTCCTGCTTCACCGCCGACCGATAACTTTACATCTTCCGAGAACTACGACGCAAATGACGGTAATGCGACGGCTACGTCAAAGAAGCAGGCTTGGAATAAGCCTTCAAATGGGGTCGTTGAGGGTGGTTCTGTAATGGGGGCAGACTCTTGGCCTGCTCTTGCGGAGTCCGCGAGGGCTTCACCCAAATTAGCGCTCGATTCTCCTCCGAAGCCTACCATCGAAGTATCAGTCCCTCCTTCGCAGGGACCTATCAATGTACCTCCTCAGCGGCAAGCTACAAATAATGCCAAATCGAACCCGAGTCTGAAACATCCAGTGGTTGCTCGACAAAGATCCTCAAGGCGGGGTGGTGGTGTTGGTGGCAGCTCAGTGGGAGGGTCTGGACGAGGATTTTATCGCCCTTCGCCACCTCCACCACCACCTCCCCCACCACCTTTTCCTGTATTTCAAATCCCTGCAAGTAGTTATTGTAACCTGATACCAGCAATTCATGATCCTTCTTCAGGAGAACCACTGTTCAGGAGCAATAATTGGGATCCGCGGGCTGTTGCAGGCTTTGTGCCTCAAATAAATTTTGCTACTGATCACCGAAACTTCTTTCCTAGGGGGAATTTAGCCCTCCATCCTCGTGGTGACAGTCACTATCATAACAATCGTGGGGGAAAACGTGGTCAAGATCGTGGAATGTATCCTAATGCTCGAGATGCTCATTTTCAGCAGCACAGGCCTCATACTAGAGGCTTTATGAGGCCTTTGCCACCTTACACTGCTCAGTTTCCCCAGGCTGTTAGACCTCATGGGAATCCTATGCCTCCTCCAGAGTTTGTCTATGTCCCTACATTGCCCTTGGAGCCTTACAGAGGCATGTCTTTCATGCCACGACCTGCAATGAACTATCCTGCTGTAGATCCCACTCTATCTGCATCACTAGTTAAGCAGATTGAATATTATTTCAGCGATGGTAATTTGGTAAAAGATGATTATTTAAGGTCCCAGATGGACGATCAAGGCTGGGTGCCACTTTCTCTGATAGCTACTTTTCCTATGGTAATGAGTTTGACAAACAATATTCAATGGATAGTAGAATCCTTAAGAACGTCAACTGAAGTGGAAGTGCAGGATAATAGGGTCAGACGGCGAAATGAGTGGAAGAAATGGGCAACAAAAGCCAATTGGTTTAGAACTGAATTGGTCTCTTCTACTCCAAGTGGATCAGGTCATGATAGTCTAGCAACTTCTTTTCAAAGGGTCAGAGTGGATGAAGGTATGAATCAAAGTATGACTAGTGATAGTGATCCTCATAATACCAAGCGTACTACTGAGATACAACCTTCCGAGTCAGGTGATCGTTCGCAACTTACTAATGGGGAGGTGAATCAGGATGTTCAAACTGATATCTGA

Protein sequence

MGKATDYSSNHRSPSGTGFTGDNINSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPVPASPPTDNFTSSENYDANDGNATATSKKQAWNKPSNGVVEGGSVMGADSWPALAESARASPKLALDSPPKPTIEVSVPPSQGPINVPPQRQATNNAKSNPSLKHPVVARQRSSRRGGGVGGSSVGGSGRGFYRPSPPPPPPPPPPFPVFQIPASSYCNLIPAIHDPSSGEPLFRSNNWDPRAVAGFVPQINFATDHRNFFPRGNLALHPRGDSHYHNNRGGKRGQDRGMYPNARDAHFQQHRPHTRGFMRPLPPYTAQFPQAVRPHGNPMPPPEFVYVPTLPLEPYRGMSFMPRPAMNYPAVDPTLSASLVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPLSLIATFPMVMSLTNNIQWIVESLRTSTEVEVQDNRVRRRNEWKKWATKANWFRTELVSSTPSGSGHDSLATSFQRVRVDEGMNQSMTSDSDPHNTKRTTEIQPSESGDRSQLTNGEVNQDVQTDI

Homology

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BLAST of Cla007435 vs. Swiss-Prot
Match: LRP1C_ARATH (La-related protein 1C OS=Arabidopsis thaliana GN=LARP1C PE=1 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 5.3e-45
Identity = 174/550 (31.64%), Postives = 239/550 (43.45%), Query Frame = 1


Query: 8   SSNHRSPSGTGFTGDNINSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSS---L 67
           S NH SP     T     S     + + SPW Q+VRGE E I+        SS  S   +
Sbjct: 20  SGNHGSP-----TASVAQSPRRPSRQVSSPWTQIVRGESEPIAAAAAVAGPSSPQSRAPI 79

Query: 68  SSLAVSATETPVPASPPTDNFTSSENYDANDGNATATSKKQAWNKPSNGVVEGGSVMGAD 127
             +A  +   P  A    +     E  +A+ G   A  KK  W +PSNG  E G VMGA 
Sbjct: 80  EPIASVSVAAPTAAVLTVEAAAGDEKSEASGGQDNA-GKKPVWKRPSNGASEVGPVMGAS 139

Query: 128 SWPALAESARA--------SPKLALDSPPKPTIEVSVPPSQGPIN--VPPQRQATNNAKS 187
           SWPAL+E+ +A        S K   D P   +   SVP +QG  N  VP  +QA   A  
Sbjct: 140 SWPALSETTKAPSNKSSSDSLKSLGDVPSSSSASSSVPVTQGIANASVPAPKQA-GRANP 199

Query: 188 NPSLKHPVVARQRSSRRGGGVGGSSVG----GSGRGFYRPSPPPPPPPPPPFPVFQIPAS 247
           NP+  H   +RQRS ++  G  GS+ G     S +G +   P   P P            
Sbjct: 200 NPTPNH---SRQRSFKQRNGASGSANGTVSQPSAQGSFTELPSHNPSPRG---------- 259

Query: 248 SYCNLIPAIHDPSSGEPLFRSNNWDPRAVAGFVPQINFATDHRNFFPRGNLALHPRGDSH 307
                     +  +G   F S N       G     +    +RN    GN   H +    
Sbjct: 260 ---------QNQKNG---FASQN------HGGTENPSQRDSYRN--QNGN---HHQSHGG 319

Query: 308 YHNNRGGKRGQDRGMYPNARDAHFQQHRPHTRGFMRPLPPYTAQFPQ--AVRPHGNPMP- 367
             N   G +        N R+ + Q  R  T  F+R   P     PQ  A +P  + +P 
Sbjct: 320 RRNQEHGNQNWTFQRSFNGREGNAQSQR-GTPAFVRHPSPTVQPIPQFMAAQPFPSHIPF 379

Query: 368 PPEFVYVPTLPLEPYRGMSFMPR-PAMNYPAVDPTLSASLVKQIEYYFSDGNLVKDDYLR 427
           P E       P  PY  M+ +P  P   Y   DP L   L KQI+YYFSD NL+ D YLR
Sbjct: 380 PTELAQSSYYPRMPY--MTPIPHGPQFFYHYQDPPLHMKLHKQIQYYFSDENLITDIYLR 439

Query: 428 SQMDDQGWVPLSLIATFPMVMSLTNNIQWIVESLRTSTEVEVQDNRVRRRNEWKKWATKA 487
             M+++G+VPL ++A F  V  LT+NIQ IVE+L+ S  VEVQ + +R+R+ W+ W  + 
Sbjct: 440 GFMNNEGFVPLRVVAGFKKVAELTDNIQQIVEALQNSPHVEVQGDFIRKRDNWQNWVLRR 499

Query: 488 NWFRTELVSSTPSGSG------HDSLATSFQRVRVDEGMNQSMTSDSDPHNTKRTTEIQP 529
           N          P+GSG       D++A     + VD+       S +DP     ++++QP
Sbjct: 500 N----------PTGSGPQSVDRADAVAKRLGNLSVDQ-------SSADPIGGS-SSQLQP 505

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BLAST of Cla007435 vs. Swiss-Prot
Match: LRP1A_ARATH (La-related protein 1A OS=Arabidopsis thaliana GN=LARP1A PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 7.2e-26
Identity = 111/360 (30.83%), Postives = 158/360 (43.89%), Query Frame = 1


Query: 120 VMGADSWPALAESARASPKLALDSPPKPTIEVSVPPSQG-PINVPPQRQATNNAKSNPSL 179
           VMGA SWPALA++A+  P+     P  P      PPS+  P ++P              +
Sbjct: 42  VMGAHSWPALADAAQ-QPR-----PKNPPAPAPAPPSKNIPTSIP--------------I 101

Query: 180 KHPVVARQRSSRRGGGVGGSSVGGSGRGFYRPSPPPPP--PPPPPFPVFQIP--ASSYCN 239
             P V  Q  S+ GG         SGR   +P P      PPPPP+ V  +P     +  
Sbjct: 102 PTPAVTGQAKSKGGGKANPGHKNPSGR-HSKPGPRSNQNGPPPPPYLVHAVPYHPPPFPP 161

Query: 240 LIPAIHDPSSGEPLFRSNNWDPRAVAGFVPQINFATDHRNF--FPRGNLALHPRGD--SH 299
           ++P  H   +  P F    + P  V   VP +  + + +     P   +   P+GD    
Sbjct: 162 MVPLPH---AAGPDFPYAPYPPYPVP--VPPVTESGNEKQVQASPLPPVLPAPQGDPGKP 221

Query: 300 YHNNRG-GKRGQDRGMYPNARDAHFQQHRPHTRGFMRPLPPYTAQFPQAVRPHGNPMPPP 359
           + + RG   R   +G  P              R F RP  P+    P  +   G   P P
Sbjct: 222 WPHQRGFDPRNMPQGAGP--------------RNFGRP--PFMGPAPGFLVGPGPGFPGP 281

Query: 360 EFVYVPTLPLEPYRGM---SFMPRPAMNYPAV-DPT---LSASLVKQIEYYFSDGNLVKD 419
            + Y+P  P    RG     F P P    P +  P    L   ++KQ+EYYFSD NL  D
Sbjct: 282 VY-YLPGPPPGAIRGPYPPRFAPYPVNQGPPILSPEKLDLRDRVLKQVEYYFSDENLEND 341

Query: 420 DYLRSQMDDQGWVPLSLIATFPMVMSLTNNIQWIVESLRTSTEVEVQDNRVRRRNEWKKW 463
            YL S MD++GWVP  +IA F  V ++T ++ +IV +L  S  VEVQ +++R+R++W  W
Sbjct: 342 HYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSNSVEVQGDQIRKRDKWSDW 358

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BLAST of Cla007435 vs. TrEMBL
Match: A0A0A0LH68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G873810 PE=4 SV=1)

HSP 1 Score: 975.3 bits (2520), Expect = 3.0e-281
Identity = 472/543 (86.92%), Postives = 499/543 (91.90%), Query Frame = 1


Query: 1   MGKATDYSSNHRSPSGTGFTGDNINSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSS 60
           MGKATD+SSNHRSPSGT   GDN NSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSS
Sbjct: 1   MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSS 60

Query: 61  SSSLSSLAVSATETPVPASPPTDNFTSSENYDANDGNATATSKKQAWNKPSNGVVEGGSV 120
           SSSLSSLAVSATETP PASPP+DNFTSSEN DANDGNA   SKKQAWNKP+NGVVEGGSV
Sbjct: 61  SSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGNAA--SKKQAWNKPTNGVVEGGSV 120

Query: 121 MGADSWPALAESARASPKLALDSPPKPTIEVSVPPSQGPINVPPQRQATNNAKSNPSLKH 180
           MGADSWPALAESARASPKL +DSPPK T+EV+VPPSQGPINVPPQRQATNNAKSNP+LK+
Sbjct: 121 MGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKN 180

Query: 181 PVVARQRSSRRGGGVGGSSVGGSGRGFYRPSPPPPPPPPPPFPVFQIPASSYCNLIPAIH 240
           PVVAR RSSRRGGG GGSSVGG   G+YRP PPPPPPPPPPFPVFQ+  +SYCN+IPAI 
Sbjct: 181 PVVAR-RSSRRGGGGGGSSVGGPRGGYYRPPPPPPPPPPPPFPVFQVSPNSYCNMIPAIP 240

Query: 241 DPSSGEPLFRSNNWDPRAVAGFVPQINFATDHRNFFPRGNLALHPRGDSHYHNNRGGKRG 300
           DPSSGEPLFRS NWDPRAVAGFVPQ+NF TDHRNFFPRGN  LHPRGDSHYHNNRGGKRG
Sbjct: 241 DPSSGEPLFRSPNWDPRAVAGFVPQLNFGTDHRNFFPRGNFPLHPRGDSHYHNNRGGKRG 300

Query: 301 QDRGMYPNARDAHFQQHRPHTRGFMRPLPPYTAQFPQAVRPHGNPMPPPEFVYVPTLPLE 360
           QDRG+Y NARDAHFQQHRPHTRGFMRPLPP+T QFPQ VRPH NPM  PEFVYVPTLPLE
Sbjct: 301 QDRGIYFNARDAHFQQHRPHTRGFMRPLPPFTGQFPQGVRPHLNPMAHPEFVYVPTLPLE 360

Query: 361 PYR-GMSFMPRPAMNYPAVDPTLSASLVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPLSL 420
            YR G+ FMPRPAMNYP VDPTLSAS+VKQIEYYFSDGNLVKDDYLRSQMDDQGWVP+SL
Sbjct: 361 AYRGGLPFMPRPAMNYPTVDPTLSASIVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPISL 420

Query: 421 IATFPMVMSLTNNIQWIVESLRTSTEVEVQDNRVRRRNEWKKWATKANWFRTELVSSTPS 480
           IATFPMV+SLTNNIQWIVESLRTSTEVEVQD ++RRRNEWKKW TK+NWFRT+LVSS  S
Sbjct: 421 IATFPMVLSLTNNIQWIVESLRTSTEVEVQDYKIRRRNEWKKWTTKSNWFRTDLVSSASS 480

Query: 481 GSGHDSLATSFQRVRVDEGMNQSMTSDSDPHNTKRTTEIQPSESGDRSQLTNGEVNQDVQ 540
           GS HDSLATSFQRVRVDEG NQSMT+D+DPHN +RTTE+Q SESGD SQLTNGE NQDVQ
Sbjct: 481 GSTHDSLATSFQRVRVDEGTNQSMTNDTDPHNAERTTELQSSESGDCSQLTNGEANQDVQ 540

Query: 541 TDI 543
           TDI
Sbjct: 541 TDI 540

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BLAST of Cla007435 vs. TrEMBL
Match: J0XHB8_LOALO (La domain-containing protein OS=Loa loa GN=LOAG_17857 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.2e-09
Identity = 45/136 (33.09%), Postives = 68/136 (50.00%), Query Frame = 1


Query: 327 PLPPYTAQFPQAVRPHGNPMPPPEFVYVPTLPLEPYRGMSFMPRPAMNYPA------VDP 386
           P PP     P    P   P+PPP     P  PL P   ++ +  P     +         
Sbjct: 95  PPPP-----PPPPPPPPPPLPPPPPSLPPPPPLPPL-SLAVVAAPTQRITSNTVISQSPE 154

Query: 387 TLSASLVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPLSLIATFPMVMSLTNNIQWIVESL 446
            +   L  Q+EYYFS  NL+ D +LR QMD+  +VP+ +IA+FP +  LT++   +V+ L
Sbjct: 155 QIKQQLKAQLEYYFSRENLMTDKFLRCQMDNDQYVPIRIIASFPKIKRLTSDYSLVVKVL 214

Query: 447 RTSTEVEVQDNRVRRR 457
           R S++V+V +   R R
Sbjct: 215 RESSQVQVDEKGQRVR 224

[Close]

BLAST of Cla007435 vs. TrEMBL
Match: J0XHB8_LOALO (La domain-containing protein OS=Loa loa GN=LOAG_17857 PE=4 SV=1)

HSP 1 Score: 36.6 bits (83), Expect = 1.2e+02
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 1


Query: 210 PSPPPPPPPPPPFP 224
           P PPPPPPPPPP P
Sbjct: 97  PPPPPPPPPPPPLP 110

HSP 2 Score: 36.2 bits (82), Expect = 1.5e+02
Identity = 14/22 (63.64%), Postives = 14/22 (63.64%), Query Frame = 1


Query: 210 PSPPPPPPPPPPFPVFQIPASS 232
           P PPPPPPPPPP P    P  S
Sbjct: 94  PPPPPPPPPPPPPPPLPPPPPS 115

HSP 3 Score: 33.1 bits (74), Expect = 1.3e+03
Identity = 11/13 (84.62%), Postives = 12/13 (92.31%), Query Frame = 1


Query: 211 SPPPPPPPPPPFP 224
           +PPPPPPPPPP P
Sbjct: 92  APPPPPPPPPPPP 104

[Close]

BLAST of Cla007435 vs. NCBI nr
Match: gi|449437412|ref|XP_004136486.1| (PREDICTED: la-related protein 1C [Cucumis sativus])

HSP 1 Score: 975.3 bits (2520), Expect = 4.3e-281
Identity = 472/543 (86.92%), Postives = 499/543 (91.90%), Query Frame = 1


Query: 1   MGKATDYSSNHRSPSGTGFTGDNINSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSS 60
           MGKATD+SSNHRSPSGT   GDN NSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSS
Sbjct: 1   MGKATDFSSNHRSPSGTSLAGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSS 60

Query: 61  SSSLSSLAVSATETPVPASPPTDNFTSSENYDANDGNATATSKKQAWNKPSNGVVEGGSV 120
           SSSLSSLAVSATETP PASPP+DNFTSSEN DANDGNA   SKKQAWNKP+NGVVEGGSV
Sbjct: 61  SSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGNAA--SKKQAWNKPTNGVVEGGSV 120

Query: 121 MGADSWPALAESARASPKLALDSPPKPTIEVSVPPSQGPINVPPQRQATNNAKSNPSLKH 180
           MGADSWPALAESARASPKL +DSPPK T+EV+VPPSQGPINVPPQRQATNNAKSNP+LK+
Sbjct: 121 MGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKN 180

Query: 181 PVVARQRSSRRGGGVGGSSVGGSGRGFYRPSPPPPPPPPPPFPVFQIPASSYCNLIPAIH 240
           PVVAR RSSRRGGG GGSSVGG   G+YRP PPPPPPPPPPFPVFQ+  +SYCN+IPAI 
Sbjct: 181 PVVAR-RSSRRGGGGGGSSVGGPRGGYYRPPPPPPPPPPPPFPVFQVSPNSYCNMIPAIP 240

Query: 241 DPSSGEPLFRSNNWDPRAVAGFVPQINFATDHRNFFPRGNLALHPRGDSHYHNNRGGKRG 300
           DPSSGEPLFRS NWDPRAVAGFVPQ+NF TDHRNFFPRGN  LHPRGDSHYHNNRGGKRG
Sbjct: 241 DPSSGEPLFRSPNWDPRAVAGFVPQLNFGTDHRNFFPRGNFPLHPRGDSHYHNNRGGKRG 300

Query: 301 QDRGMYPNARDAHFQQHRPHTRGFMRPLPPYTAQFPQAVRPHGNPMPPPEFVYVPTLPLE 360
           QDRG+Y NARDAHFQQHRPHTRGFMRPLPP+T QFPQ VRPH NPM  PEFVYVPTLPLE
Sbjct: 301 QDRGIYFNARDAHFQQHRPHTRGFMRPLPPFTGQFPQGVRPHLNPMAHPEFVYVPTLPLE 360

Query: 361 PYR-GMSFMPRPAMNYPAVDPTLSASLVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPLSL 420
            YR G+ FMPRPAMNYP VDPTLSAS+VKQIEYYFSDGNLVKDDYLRSQMDDQGWVP+SL
Sbjct: 361 AYRGGLPFMPRPAMNYPTVDPTLSASIVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPISL 420

Query: 421 IATFPMVMSLTNNIQWIVESLRTSTEVEVQDNRVRRRNEWKKWATKANWFRTELVSSTPS 480
           IATFPMV+SLTNNIQWIVESLRTSTEVEVQD ++RRRNEWKKW TK+NWFRT+LVSS  S
Sbjct: 421 IATFPMVLSLTNNIQWIVESLRTSTEVEVQDYKIRRRNEWKKWTTKSNWFRTDLVSSASS 480

Query: 481 GSGHDSLATSFQRVRVDEGMNQSMTSDSDPHNTKRTTEIQPSESGDRSQLTNGEVNQDVQ 540
           GS HDSLATSFQRVRVDEG NQSMT+D+DPHN +RTTE+Q SESGD SQLTNGE NQDVQ
Sbjct: 481 GSTHDSLATSFQRVRVDEGTNQSMTNDTDPHNAERTTELQSSESGDCSQLTNGEANQDVQ 540

Query: 541 TDI 543
           TDI
Sbjct: 541 TDI 540

[Close]

BLAST of Cla007435 vs. NCBI nr
Match: gi|659132939|ref|XP_008466467.1| (PREDICTED: la-related protein 1C-like [Cucumis melo])

HSP 1 Score: 970.3 bits (2507), Expect = 1.4e-279
Identity = 469/547 (85.74%), Postives = 499/547 (91.22%), Query Frame = 1


Query: 1   MGKATDYSSNHRSPSGTGFTGDNINSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSS 60
           MGKATD+SSN RSPSGT FTGDN NSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSS
Sbjct: 1   MGKATDFSSNRRSPSGTSFTGDNTNSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSS 60

Query: 61  SSSLSSLAVSATETPVPASPPTDNFTSSENYDANDGNATATSKKQAWNKPSNGVVEGGSV 120
           SSSLSSLAVSATETP PASPP+DNFTSSEN D NDGNATA SKKQAWNKP+NGVVEGGSV
Sbjct: 61  SSSLSSLAVSATETPAPASPPSDNFTSSENCDTNDGNATAASKKQAWNKPTNGVVEGGSV 120

Query: 121 MGADSWPALAESARASPKLALDSPPKPTIEVSVPPSQGPINVPPQRQATNNAKSNPSLKH 180
           MGADSWPALAESARASPKL +DSPPK T+EV+VPPSQGPINVPPQRQATNNAKSNP+LK+
Sbjct: 121 MGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQGPINVPPQRQATNNAKSNPTLKN 180

Query: 181 PVVARQRSSRRGGGVGGSSVGGSGR-GFYR-PSPPPPPPPPPPFPVFQIPASSYCNLIPA 240
           PVV R RSSRRGGG GGSSVGG  R GFYR P PPPPPPPPPPFP+FQ+P +SYCN+IPA
Sbjct: 181 PVVPRLRSSRRGGGGGGSSVGGPARGGFYRPPPPPPPPPPPPPFPLFQVPPNSYCNMIPA 240

Query: 241 IHDPSSGEPLFRS--NNWDPRAVAGFVPQINFATDHRNFFPRGNLALHPRGDSHYHNNRG 300
           I DPSSGEP FRS   NWDPRAVAGFVPQ+NF TDHRNFFPRG+LA HPR D HYHNNRG
Sbjct: 241 IPDPSSGEPPFRSLNPNWDPRAVAGFVPQLNFGTDHRNFFPRGHLAFHPRVDGHYHNNRG 300

Query: 301 GKRGQDRGMYPNARDAHFQQHRPHTRGFMRPLPPYTAQFPQAVRPHGNPMPPPEFVYVPT 360
           GKRGQDRG+YPNARDAHFQQHRPHTRGFMRPLPP+  QFPQ VRPH NPM  PEFVYVPT
Sbjct: 301 GKRGQDRGIYPNARDAHFQQHRPHTRGFMRPLPPFAGQFPQGVRPHVNPMAHPEFVYVPT 360

Query: 361 LPLEPYRG-MSFMPRPAMNYPAVDPTLSASLVKQIEYYFSDGNLVKDDYLRSQMDDQGWV 420
           LPLE YRG M FMPRPAMNYP VDP LSAS++KQIEYYFSDGNLVKDDYLRSQMDDQGWV
Sbjct: 361 LPLEAYRGSMPFMPRPAMNYPTVDPILSASILKQIEYYFSDGNLVKDDYLRSQMDDQGWV 420

Query: 421 PLSLIATFPMVMSLTNNIQWIVESLRTSTEVEVQDNRVRRRNEWKKWATKANWFRTELVS 480
           P+SLIATFPMV+SLTNNIQWI+ESLR STEVEVQDN++RRRNEWKKW TK+NWFRT+LVS
Sbjct: 421 PISLIATFPMVLSLTNNIQWIIESLRASTEVEVQDNKIRRRNEWKKWTTKSNWFRTDLVS 480

Query: 481 STPSGSGHDSLATSFQRVRVDEGMNQSMTSDSDPHNTKRTTEIQPSESGDRSQLTNGEVN 540
           S  SGS HDSLATSFQRVRVDEG NQSMT+D+DPHN +RTTE+Q SESGD S+LTNGE N
Sbjct: 481 SATSGSSHDSLATSFQRVRVDEGTNQSMTNDNDPHNAERTTELQSSESGDCSKLTNGEAN 540

Query: 541 QDVQTDI 543
           QDVQTDI
Sbjct: 541 QDVQTDI 547

[Close]

BLAST of Cla007435 vs. NCBI nr
Match: gi|641866248|gb|KDO84933.1| (hypothetical protein CISIN_1g008981mg [Citrus sinensis])

HSP 1 Score: 474.6 bits (1220), Expect = 2.4e-130
Identity = 266/533 (49.91%), Postives = 341/533 (63.98%), Query Frame = 1


Query: 1   MGKATDYSSNHRSPSGTGFTGDNINSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSS 60
           M    D +SNH +P G+GF+GD ++S + RRKN  S W++VVRGE +  S       SS 
Sbjct: 1   MAMTADSTSNHVTPRGSGFSGDGLSSPQLRRKNSPSQWSEVVRGEHDPASTTVNHSQSSP 60

Query: 61  SSSLS---------SLAVSATETPVPASPPTDNFTSSENYDANDGNATATSKKQAWNKPS 120
           S  L+         S++ S      P+SPP DN  ++ + DA+ GNA A  KK AWNKPS
Sbjct: 61  SPPLTTTSLPEPTGSVSPSKAVASAPSSPPPDNPIAAGSSDADKGNA-ARPKKLAWNKPS 120

Query: 121 NGVVEGGSVMGADSWPALAESARASPKL--ALDSPPKPTIEVSVPPSQGPINVP--PQRQ 180
           NGVVE G VMGA SWPAL+ES + SPK   A  S  KP  + SV  +Q P+ +P  PQ+ 
Sbjct: 121 NGVVEVGPVMGAASWPALSESTKPSPKSSSADSSSSKPVADGSVSGTQVPL-IPHLPQKV 180

Query: 181 ATNNAKSNPSLKHPVVARQRSSRRGGGVGGSSVGGSGRGFYRPSPPPPPPPPPPFPVFQI 240
           +  NA  N +    + ARQR  R GGGV  +   GSG    RP+ PPPPPPPPPFPVF +
Sbjct: 181 SNANANPNSNANRTMPARQRLKRSGGGVSNA---GSGPAQTRPTQPPPPPPPPPFPVFPM 240

Query: 241 PASSYCNLIPAIHDPSSGEPLFRSNNWDPRAVAGFVPQINFATDHRNFFPRGNLALHPRG 300
           P +S+ NL+ A+ DPS  EPL+R +NWD R V GFV Q +   D RN   RGN     RG
Sbjct: 241 PPNSFANLVTAMPDPSPREPLYRGSNWDARPVGGFVSQSHPMNDQRNSSRRGNYG--QRG 300

Query: 301 DSHYHNNRGGKRGQDRGMYPNARDAHFQQHRPHTRGFMRPLPPYTAQF--PQAVRPHGNP 360
           D +Y+NN GG+  QDRG Y NARDAH Q  R   RGF+RP PP  A F  PQ +RP  NP
Sbjct: 301 DGNYNNNFGGRHDQDRGNYSNARDAHVQPQRGPPRGFVRPAPPNAAAFAPPQPMRPFPNP 360

Query: 361 MPPPEFVYVPTLPLEP--YRGMS----FMPRPAMNYPAVDPTLSASLVKQIEYYFSDGNL 420
           M  PEF+Y+P +P+E    RG++    F+P   +  P  +P+L+A L+ QI+YYFSD NL
Sbjct: 361 MGFPEFIYIPPMPVEAAALRGVTGMPPFIPPAPVLMPVPEPSLAAMLIHQIDYYFSDANL 420

Query: 421 VKDDYLRSQMDDQGWVPLSLIATFPMVMSLTNNIQWIVESLRTSTEVEVQDNRVRRRNEW 480
           VKD++L+S MDDQGWVP++LIA+FP V +LT+NIQ I++SLRTST VEVQD+RVRRRNEW
Sbjct: 421 VKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLRTSTVVEVQDDRVRRRNEW 480

Query: 481 KKWATKANWFRTELVSSTPSGSGHDSLATSFQRVRVDEG-MNQ-SMTSDSDPH 511
            KW        TE   S+P+GS  D LA SFQ + V EG +NQ S+T +++ H
Sbjct: 481 MKWIATPGRISTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANCH 526

[Close]

BLAST of Cla007435 vs. NCBI nr
Match: gi|568839462|ref|XP_006473702.1| (PREDICTED: la-related protein 1C-like [Citrus sinensis])

HSP 1 Score: 473.0 bits (1216), Expect = 6.9e-130
Identity = 265/533 (49.72%), Postives = 341/533 (63.98%), Query Frame = 1


Query: 1   MGKATDYSSNHRSPSGTGFTGDNINSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSS 60
           M    D +SNH +P G+GF+GD ++S + RRKN  S W++VVRGE +  S       SS 
Sbjct: 1   MAMTADSTSNHVTPRGSGFSGDGLSSPQLRRKNSPSQWSEVVRGEHDPASTTVNHSQSSP 60

Query: 61  SSSLS---------SLAVSATETPVPASPPTDNFTSSENYDANDGNATATSKKQAWNKPS 120
           S  L+         S++ S      P+SPP DN  ++ + DA+ GNA A  KK AWNKPS
Sbjct: 61  SPPLTTTSLPEPTGSVSPSKAVASAPSSPPPDNPIAAGSSDADKGNA-ARPKKLAWNKPS 120

Query: 121 NGVVEGGSVMGADSWPALAESARASPKL--ALDSPPKPTIEVSVPPSQGPINVP--PQRQ 180
           NGVVE G VMGA SWPAL+ES + SPK   A  S  KP  + SV  +Q P+ +P  PQ+ 
Sbjct: 121 NGVVEVGPVMGAASWPALSESTKPSPKSSSADSSSSKPVADGSVSGTQVPL-IPHLPQKV 180

Query: 181 ATNNAKSNPSLKHPVVARQRSSRRGGGVGGSSVGGSGRGFYRPSPPPPPPPPPPFPVFQI 240
           +  NA  N +    + ARQR  R GGGV  +   GSG    RP+ PPPPPPPPPFPVF +
Sbjct: 181 SNANANPNSNANRTMPARQRLKRSGGGVSNA---GSGPAQTRPTQPPPPPPPPPFPVFPM 240

Query: 241 PASSYCNLIPAIHDPSSGEPLFRSNNWDPRAVAGFVPQINFATDHRNFFPRGNLALHPRG 300
           P +S+ NL+ A+ DPS  EPL+R +NWD R V GFV Q +   D RN   RGN     RG
Sbjct: 241 PPNSFANLVTAMPDPSPREPLYRGSNWDARPVGGFVSQSHPMNDQRNSSRRGNYG--QRG 300

Query: 301 DSHYHNNRGGKRGQDRGMYPNARDAHFQQHRPHTRGFMRPLPPYTAQF--PQAVRPHGNP 360
           D +Y+NN GG+  QDRG Y NARDAH Q  R   RGF+RP PP  A F  PQ +RP  NP
Sbjct: 301 DGNYNNNFGGRHDQDRGNYSNARDAHVQPQRGPPRGFVRPPPPNAAAFAPPQPMRPFPNP 360

Query: 361 MPPPEFVYVPTLPLEP--YRGMS----FMPRPAMNYPAVDPTLSASLVKQIEYYFSDGNL 420
           M  PEF+Y+P +P+E    RG++    F+P   +  P  +P+L+A L+ QI+YYFSD NL
Sbjct: 361 MGFPEFIYIPPMPVEAAALRGVTGMPPFIPPAPVLMPVPEPSLAAMLIHQIDYYFSDANL 420

Query: 421 VKDDYLRSQMDDQGWVPLSLIATFPMVMSLTNNIQWIVESLRTSTEVEVQDNRVRRRNEW 480
           VKD++L+S MDDQGWVP++LIA+FP V +LT+NIQ I++SLRTST VEVQD++VRRRNEW
Sbjct: 421 VKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLRTSTVVEVQDDKVRRRNEW 480

Query: 481 KKWATKANWFRTELVSSTPSGSGHDSLATSFQRVRVDEG-MNQ-SMTSDSDPH 511
            KW        TE   S+P+GS  D LA SFQ + V EG +NQ S+T +++ H
Sbjct: 481 MKWIATPGRVSTESGLSSPAGSSVDVLAPSFQNITVKEGAVNQRSLTGNANSH 526

[Close]

BLAST of Cla007435 vs. NCBI nr
Match: gi|590594521|ref|XP_007017875.1| (Winged-helix DNA-binding transcription factor family protein, putative [Theobroma cacao])

HSP 1 Score: 471.1 bits (1211), Expect = 2.6e-129
Identity = 274/557 (49.19%), Postives = 344/557 (61.76%), Query Frame = 1


Query: 8   SSNHRSPSGTGFTGDNINSSEFRRKNLQSPWAQVVRGEPESISPVDQSQLSSSSSS---L 67
           +++  SPS  G     +NS +FRRKNL SPWAQVVRGE ESI  V  +  S SS++   +
Sbjct: 4   TADSSSPSDGG-----LNSPQFRRKNLPSPWAQVVRGESESIVAVHHTPSSPSSATSPPV 63

Query: 68  SSLAVSAT----------ETPVPASPPTDNFTSSENYDAN-DGNATATSKKQAWNKPSNG 127
           +SL   AT           +   +SPP DN  +    D+N + NA A SKK AWNKPSNG
Sbjct: 64  ASLPEQATFSDCSPSKAASSSSSSSPPPDNLAADGGSDSNSNSNAAARSKKPAWNKPSNG 123

Query: 128 VVEGGSVMGADSWPALAESARASPKLALDSPPKPTIEVSVPPSQGPINVPP--QRQATNN 187
           VVE   VMGA SWPAL+E+ARASPK   DS  K   + S+  SQGP+ +P   Q+Q T+N
Sbjct: 124 VVEVSPVMGAASWPALSEAARASPKSLADSSSKTVPDGSLSTSQGPV-IPQSTQKQGTSN 183

Query: 188 AKSNPSLKHPVVARQRSSRRGGGVGGS-SVGGSGRGFYRPSPPPPPPPPPPFPVFQIPAS 247
           A    +    + +RQRSS+RGG  GG+ S  G     +    PPPPPPPPPFPV Q+P +
Sbjct: 184 ANPTSTPNRTMSSRQRSSKRGGSGGGNNSASGPPHSGFSHQHPPPPPPPPPFPVLQMPPN 243

Query: 248 SYCNLIPAIHDPSSGEPLFRSNNWDPRAVAGFVPQINFATDHRNFFPRGNLALHPRGDSH 307
           SY N +PA+ DPS  +P +R NNW+ R V GF  Q +   DHR+   RG     PRGD  
Sbjct: 244 SYGNFVPAMPDPSMRDPQYRGNNWENRPVGGFASQSH--NDHRHSSRRGG-NYGPRGDGG 303

Query: 308 YHNNRGGKRGQDRGMYPNARDAHFQQHRPHTRGFMRPLPPYTAQF--PQAVRPHGNPMPP 367
           YHNN GG+R QDRG Y + RD H Q  R   RGF RP PP    F  PQ VRP  NP+  
Sbjct: 304 YHNNYGGRRDQDRGNYGSGRDGHMQHQRAPPRGFPRPPPPSAHSFVPPQPVRPFVNPIGY 363

Query: 368 PEFVYVPTLPLEPYRGMSFM---PRPAMNYPAVDPTLSASLVKQIEYYFSDGNLVKDDYL 427
           PEF+Y PT+P+EP+RGM      P PAM  P  +  L A L+ QI+YYFSD NLVKD++L
Sbjct: 364 PEFIYFPTMPMEPFRGMPLFTHAPPPAMIMPVPELPLPALLLHQIDYYFSDANLVKDEFL 423

Query: 428 RSQMDDQGWVPLSLIATFPMVMSLTNNIQWIVESLRTSTEVEVQDNRVRRRNEWKKWATK 487
           +S MDDQGWVP+SLIA FP V SLT+NIQ I++SLR+ST VEVQD++VRR NEW KW   
Sbjct: 424 KSNMDDQGWVPISLIAGFPRVKSLTSNIQLILDSLRSSTIVEVQDDKVRRLNEWMKWIPS 483

Query: 488 ANWFRTELVSSTPSGSGHDSLATSFQRVRV-DEGMNQSMTSDSDPHNTKRTTEIQPSESG 542
                TE    +P  S  D LA+SFQ++ V +E +NQS   + +PH ++ T+    SE  
Sbjct: 484 R--VSTESGILSPGASSSDMLASSFQQITVKEESINQSKAGNVNPH-SEDTSGRHLSELV 543

The following BLAST results are available for this feature:

BLAST of Cla007435 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LRP1C_ARATH	5.3e-45	31.64	La-related protein 1C OS=Arabidopsis thaliana GN=LARP1C PE=1 SV=1	[more]
LRP1A_ARATH	7.2e-26	30.83	La-related protein 1A OS=Arabidopsis thaliana GN=LARP1A PE=1 SV=1	[more]

BLAST of Cla007435 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH68_CUCSA	3.0e-281	86.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G873810 PE=4 SV=1	[more]
J0XHB8_LOALO	4.2e-09	33.09	La domain-containing protein OS=Loa loa GN=LOAG_17857 PE=4 SV=1	[more]
J0XHB8_LOALO	1.2e+02	85.71	La domain-containing protein OS=Loa loa GN=LOAG_17857 PE=4 SV=1	[more]

BLAST of Cla007435 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437412\|ref\|XP_004136486.1\|	4.3e-281	86.92	PREDICTED: la-related protein 1C [Cucumis sativus]	[more]
gi\|659132939\|ref\|XP_008466467.1\|	1.4e-279	85.74	PREDICTED: la-related protein 1C-like [Cucumis melo]	[more]
gi\|641866248\|gb\|KDO84933.1\|	2.4e-130	49.91	hypothetical protein CISIN_1g008981mg [Citrus sinensis]	[more]
gi\|568839462\|ref\|XP_006473702.1\|	6.9e-130	49.72	PREDICTED: la-related protein 1C-like [Citrus sinensis]	[more]
gi\|590594521\|ref\|XP_007017875.1\|	2.6e-129	49.19	Winged-helix DNA-binding transcription factor family protein, putative [Theobrom...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR006630	La_HTH
IPR011991	Winged helix-turn-helix DNA-binding domain

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla007435	Cla007435	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla007435	Cla007435.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla007435.1.cds1	Cla007435.1.cds1	CDS
Cla007435.1.cds2	Cla007435.1.cds2	CDS
Cla007435.1.cds3	Cla007435.1.cds3	CDS
Cla007435.1.cds4	Cla007435.1.cds4	CDS
Cla007435.1.cds5	Cla007435.1.cds5	CDS
Cla007435.1.cds6	Cla007435.1.cds6	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006630	RNA-binding protein Lupus La	PFAM	PF05383	La	coord: 386..441 score: 5.1
IPR006630	RNA-binding protein Lupus La	SMART	SM00715	la	coord: 380..456 score: 3.7
IPR006630	RNA-binding protein Lupus La	PROFILE	PS50961	HTH_LA	coord: 376..465 score: 25
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	G3DSA:1.10.10.10		coord: 379..459 score: 4.1
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 377..464 score: 2.09
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 61..525 score: 5.5
None	No IPR available	PANTHER	PTHR22792:SF66	LA-RELATED PROTEIN 7	coord: 61..525 score: 5.5