Cla006145.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006145
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 8651498 .. 8652019 (-)
Sequence length	522

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTCAGATATTTGGTAACTCGAATGGTGGCGAATGGCTTCAGAACAGCAAACAGAAGCCCTAGAACCTACGCTACGGCGACTGCTCCGAGGATGAAATCTTACGCGCCGGTAGCCGATTTCTCGCAATTCGATCACCATCACCAGCAGCAACAGAGCAAGCCGAAGGCCTCAAGAGCCGGCGATTTTGTTCCGGTATATGTGGCGGTCGGAATGATTGCGCTCTCTGTAGGTCTCGGATTGCACACGGCGAAGCAGCAATTGGCTCATTCGCCGTCCGTTTCCGTTAGGAAGAAACGGAGAGAGACGATCCCGGAGGTGGTGGAGCCGGAGCACGTGGCGGAGGAGACTGAGAAGTTCTTTGCAAAATCGTTCTTCAGAAAAGTGGCTCACGTTCAGGAAGTGGAGAAATTTGGTGATTACAAAGTTCCGTACGATCCTCTGCTCGGCGATGCATATGCCCATCGCCATCGTACTGAGACGCTGAAGTCCGTCGGAATCGATCCTGCTTCGAACTGA

mRNA sequence

ATGGCGCTCAGATATTTGGTAACTCGAATGGTGGCGAATGGCTTCAGAACAGCAAACAGAAGCCCTAGAACCTACGCTACGGCGACTGCTCCGAGGATGAAATCTTACGCGCCGGTAGCCGATTTCTCGCAATTCGATCACCATCACCAGCAGCAACAGAGCAAGCCGAAGGCCTCAAGAGCCGGCGATTTTGTTCCGGTATATGTGGCGGTCGGAATGATTGCGCTCTCTGTAGGTCTCGGATTGCACACGGCGAAGCAGCAATTGGCTCATTCGCCGTCCGTTTCCGTTAGGAAGAAACGGAGAGAGACGATCCCGGAGGTGGTGGAGCCGGAGCACGTGGCGGAGGAGACTGAGAAGTTCTTTGCAAAATCGTTCTTCAGAAAAGTGGCTCACGTTCAGGAAGTGGAGAAATTTGGTGATTACAAAGTTCCGTACGATCCTCTGCTCGGCGATGCATATGCCCATCGCCATCGTACTGAGACGCTGAAGTCCGTCGGAATCGATCCTGCTTCGAACTGA

Coding sequence (CDS)

ATGGCGCTCAGATATTTGGTAACTCGAATGGTGGCGAATGGCTTCAGAACAGCAAACAGAAGCCCTAGAACCTACGCTACGGCGACTGCTCCGAGGATGAAATCTTACGCGCCGGTAGCCGATTTCTCGCAATTCGATCACCATCACCAGCAGCAACAGAGCAAGCCGAAGGCCTCAAGAGCCGGCGATTTTGTTCCGGTATATGTGGCGGTCGGAATGATTGCGCTCTCTGTAGGTCTCGGATTGCACACGGCGAAGCAGCAATTGGCTCATTCGCCGTCCGTTTCCGTTAGGAAGAAACGGAGAGAGACGATCCCGGAGGTGGTGGAGCCGGAGCACGTGGCGGAGGAGACTGAGAAGTTCTTTGCAAAATCGTTCTTCAGAAAAGTGGCTCACGTTCAGGAAGTGGAGAAATTTGGTGATTACAAAGTTCCGTACGATCCTCTGCTCGGCGATGCATATGCCCATCGCCATCGTACTGAGACGCTGAAGTCCGTCGGAATCGATCCTGCTTCGAACTGA

Protein sequence

MALRYLVTRMVANGFRTANRSPRTYATATAPRMKSYAPVADFSQFDHHHQQQQSKPKASRAGDFVPVYVAVGMIALSVGLGLHTAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRKVAHVQEVEKFGDYKVPYDPLLGDAYAHRHRTETLKSVGIDPASN

Homology

[Close]

BLAST of Cla006145 vs. TrEMBL
Match: A0A0A0L610_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183970 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 6.2e-79
Identity = 152/173 (87.86%), Postives = 158/173 (91.33%), Query Frame = 1


Query: 1   MALRYLVTRMVANGFRTANRSPRTYATATAPRMKSYAPVADFSQFDHHHQQQQSKPKASR 60
           MALRYLV+RM ANGF+T+  S RTYATAT PRMKSYAP ADFS F H     QSKPKASR
Sbjct: 1   MALRYLVSRMAANGFKTSYGSTRTYATATTPRMKSYAPTADFSHFHH-----QSKPKASR 60

Query: 61  AGDFVPVYVAVGMIALSVGLGLHTAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEK 120
           AGDFVPVYVA+GMIALSVGLGLHTAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEK
Sbjct: 61  AGDFVPVYVAIGMIALSVGLGLHTAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEK 120

Query: 121 FFAKSFFRKVAHVQEVEKFGDYKVPYDPLLGDAYAHRHRTETLKSVGIDPASN 174
           FFAKSFFRKVAH+QEVEKFGDYKVPYDPLLGDAYAH HRTE+LKSVGIDPA N
Sbjct: 121 FFAKSFFRKVAHIQEVEKFGDYKVPYDPLLGDAYAHPHRTESLKSVGIDPARN 168

[Close]

BLAST of Cla006145 vs. TrEMBL
Match: B9I433_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s11280g PE=4 SV=2)

HSP 1 Score: 175.3 bits (443), Expect = 6.7e-41
Identity = 89/147 (60.54%), Postives = 112/147 (76.19%), Query Frame = 1


Query: 24  TYATATAPRMKSYAPVADFSQFDHHHQQQQSKPKASRAGDFVPVYVAVGMIALSVGLGLH 83
           TYAT+T P++KSYAP AD  QF HH+ Q+    K  R GDFVPVYVA+GMIA+S+ LGL+
Sbjct: 34  TYATSTPPKLKSYAPTAD--QFGHHYHQESKHGKKVR-GDFVPVYVAIGMIAVSISLGLY 93

Query: 84  TAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRKVAHVQEVEKFGDYK 143
           TAKQQ+ ++P+V VRKK RETIPEVV+P+ V +E +KF  KSFFRKVAHVQE + +G   
Sbjct: 94  TAKQQVLYAPNVRVRKKTRETIPEVVDPDKVVDEADKFIKKSFFRKVAHVQEFDHYGLEY 153

Query: 144 VPYDPLLGDAYAHRHRTETLKSVGIDP 171
           +P DP   DA+A + R ETLK VG+DP
Sbjct: 154 LP-DPTRKDAFARKPRAETLKDVGVDP 176

[Close]

BLAST of Cla006145 vs. TrEMBL
Match: U5FX76_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s11280g PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 6.7e-41
Identity = 89/147 (60.54%), Postives = 112/147 (76.19%), Query Frame = 1


Query: 24  TYATATAPRMKSYAPVADFSQFDHHHQQQQSKPKASRAGDFVPVYVAVGMIALSVGLGLH 83
           TYAT+T P++KSYAP AD  QF HH+ Q+    K  R GDFVPVYVA+GMIA+S+ LGL+
Sbjct: 21  TYATSTPPKLKSYAPTAD--QFGHHYHQESKHGKKVR-GDFVPVYVAIGMIAVSISLGLY 80

Query: 84  TAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRKVAHVQEVEKFGDYK 143
           TAKQQ+ ++P+V VRKK RETIPEVV+P+ V +E +KF  KSFFRKVAHVQE + +G   
Sbjct: 81  TAKQQVLYAPNVRVRKKTRETIPEVVDPDKVVDEADKFIKKSFFRKVAHVQEFDHYGLEY 140

Query: 144 VPYDPLLGDAYAHRHRTETLKSVGIDP 171
           +P DP   DA+A + R ETLK VG+DP
Sbjct: 141 LP-DPTRKDAFARKPRAETLKDVGVDP 163

[Close]

BLAST of Cla006145 vs. TrEMBL
Match: C6SWY9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G199300 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.3e-40
Identity = 91/147 (61.90%), Postives = 110/147 (74.83%), Query Frame = 1


Query: 25  YATATAPRMKSYAPVADFSQFDHHHQQQQSKPKASRAGDFVPVYVAVGMIALSVGLGLHT 84
           YAT+TAP+MK+YA  AD+      H+QQ  K   S   DFV +YVA+GMIALS GLGLHT
Sbjct: 24  YATSTAPKMKAYAAAADYG-----HKQQHGK---SAKRDFVAIYVAIGMIALSTGLGLHT 83

Query: 85  AKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRKVAHVQEVEKFGDYKV 144
           A QQL +SP+VSV+K+RRET+PEVVEP+HVAEE EKF  KSFFRKVAHVQE   + D+  
Sbjct: 84  AWQQLRNSPTVSVKKQRRETLPEVVEPDHVAEEAEKFMKKSFFRKVAHVQE-RSYPDHHQ 143

Query: 145 PYDPLLGDAYAHRHRTETLKSVGIDPA 172
              P+ GDAY +  R ETLKSVG+DP+
Sbjct: 144 ILSPIHGDAYTYTPRVETLKSVGVDPS 161

[Close]

BLAST of Cla006145 vs. TrEMBL
Match: A0A0B2QBM6_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_026991 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.3e-40
Identity = 91/147 (61.90%), Postives = 110/147 (74.83%), Query Frame = 1


Query: 25  YATATAPRMKSYAPVADFSQFDHHHQQQQSKPKASRAGDFVPVYVAVGMIALSVGLGLHT 84
           YAT+TAP+MK+YA  AD+      H+QQ  K   S   DFV +YVA+GMIALS GLGLHT
Sbjct: 24  YATSTAPKMKAYAAAADYG-----HKQQHGK---SAKRDFVAIYVAIGMIALSTGLGLHT 83

Query: 85  AKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRKVAHVQEVEKFGDYKV 144
           A QQL +SP+VSV+K+RRET+PEVVEP+HVAEE EKF  KSFFRKVAHVQE   + D+  
Sbjct: 84  AWQQLRNSPTVSVKKQRRETLPEVVEPDHVAEEAEKFMKKSFFRKVAHVQE-RSYPDHHQ 143

Query: 145 PYDPLLGDAYAHRHRTETLKSVGIDPA 172
              P+ GDAY +  R ETLKSVG+DP+
Sbjct: 144 ILSPIHGDAYTYTPRVETLKSVGVDPS 161

[Close]

BLAST of Cla006145 vs. NCBI nr
Match: gi|659077579|ref|XP_008439275.1| (PREDICTED: uncharacterized protein LOC103484107 [Cucumis melo])

HSP 1 Score: 308.1 bits (788), Expect = 9.4e-81
Identity = 155/173 (89.60%), Postives = 161/173 (93.06%), Query Frame = 1


Query: 1   MALRYLVTRMVANGFRTANRSPRTYATATAPRMKSYAPVADFSQFDHHHQQQQSKPKASR 60
           MALRYLV+RM ANGFRT+N+S RTYATAT PRMKSYAP ADFS FDH     QSKPKASR
Sbjct: 1   MALRYLVSRMAANGFRTSNKSTRTYATATTPRMKSYAPTADFSHFDH-----QSKPKASR 60

Query: 61  AGDFVPVYVAVGMIALSVGLGLHTAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEK 120
           AGDFVPVYVA+GMIALSVGLGLHTAKQQLA+SPSVSVRKKRRETIPEVVEPEHVAEETEK
Sbjct: 61  AGDFVPVYVAIGMIALSVGLGLHTAKQQLAYSPSVSVRKKRRETIPEVVEPEHVAEETEK 120

Query: 121 FFAKSFFRKVAHVQEVEKFGDYKVPYDPLLGDAYAHRHRTETLKSVGIDPASN 174
           FFAKSFFRKVAHVQEVEKFGDYKVPYDPLLGDAYAH HRTE+LKSVGIDPA N
Sbjct: 121 FFAKSFFRKVAHVQEVEKFGDYKVPYDPLLGDAYAHPHRTESLKSVGIDPARN 168

[Close]

BLAST of Cla006145 vs. NCBI nr
Match: gi|778679715|ref|XP_011651187.1| (PREDICTED: uncharacterized protein LOC105434852 [Cucumis sativus])

HSP 1 Score: 301.6 bits (771), Expect = 8.8e-79
Identity = 152/173 (87.86%), Postives = 158/173 (91.33%), Query Frame = 1


Query: 1   MALRYLVTRMVANGFRTANRSPRTYATATAPRMKSYAPVADFSQFDHHHQQQQSKPKASR 60
           MALRYLV+RM ANGF+T+  S RTYATAT PRMKSYAP ADFS F H     QSKPKASR
Sbjct: 1   MALRYLVSRMAANGFKTSYGSTRTYATATTPRMKSYAPTADFSHFHH-----QSKPKASR 60

Query: 61  AGDFVPVYVAVGMIALSVGLGLHTAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEK 120
           AGDFVPVYVA+GMIALSVGLGLHTAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEK
Sbjct: 61  AGDFVPVYVAIGMIALSVGLGLHTAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEK 120

Query: 121 FFAKSFFRKVAHVQEVEKFGDYKVPYDPLLGDAYAHRHRTETLKSVGIDPASN 174
           FFAKSFFRKVAH+QEVEKFGDYKVPYDPLLGDAYAH HRTE+LKSVGIDPA N
Sbjct: 121 FFAKSFFRKVAHIQEVEKFGDYKVPYDPLLGDAYAHPHRTESLKSVGIDPARN 168

[Close]

BLAST of Cla006145 vs. NCBI nr
Match: gi|1009142119|ref|XP_015888551.1| (PREDICTED: uncharacterized protein LOC107423498 [Ziziphus jujuba])

HSP 1 Score: 193.7 bits (491), Expect = 2.6e-46
Identity = 106/162 (65.43%), Postives = 121/162 (74.69%), Query Frame = 1


Query: 9   RMVANGFRTANRSPRTYATATAPRMKSYAPVADFSQFDHHHQQQQSKPKASRAGDFVPVY 68
           + VANGFR        Y TAT P+MKSYAP ADF QF  H QQQQ KP     GDFVPVY
Sbjct: 10  KWVANGFRQ-------YVTATPPKMKSYAPTADFGQF--HRQQQQRKPPMK--GDFVPVY 69

Query: 69  VAVGMIALSVGLGLHTAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFR 128
           VA+GMIALSV LGLHTAKQQL +SP+V V+KKRRET+PEVVEPEHV E+ ++F  KSFFR
Sbjct: 70  VAIGMIALSVTLGLHTAKQQLMNSPTVYVKKKRRETLPEVVEPEHVLEQADRFVKKSFFR 129

Query: 129 KVAHVQEVEKFGDYKVPYDPLLGDAYAHRHRTETLKSVGIDP 171
           KVAH+Q+     D+ V  DP  GDA+AHR R ETLKSVG+DP
Sbjct: 130 KVAHIQDPNH--DH-VLSDPTRGDAFAHRPRAETLKSVGVDP 157

[Close]

BLAST of Cla006145 vs. NCBI nr
Match: gi|566197926|ref|XP_006376937.1| (hypothetical protein POPTR_0012s11280g [Populus trichocarpa])

HSP 1 Score: 175.3 bits (443), Expect = 9.6e-41
Identity = 89/147 (60.54%), Postives = 112/147 (76.19%), Query Frame = 1


Query: 24  TYATATAPRMKSYAPVADFSQFDHHHQQQQSKPKASRAGDFVPVYVAVGMIALSVGLGLH 83
           TYAT+T P++KSYAP AD  QF HH+ Q+    K  R GDFVPVYVA+GMIA+S+ LGL+
Sbjct: 21  TYATSTPPKLKSYAPTAD--QFGHHYHQESKHGKKVR-GDFVPVYVAIGMIAVSISLGLY 80

Query: 84  TAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRKVAHVQEVEKFGDYK 143
           TAKQQ+ ++P+V VRKK RETIPEVV+P+ V +E +KF  KSFFRKVAHVQE + +G   
Sbjct: 81  TAKQQVLYAPNVRVRKKTRETIPEVVDPDKVVDEADKFIKKSFFRKVAHVQEFDHYGLEY 140

Query: 144 VPYDPLLGDAYAHRHRTETLKSVGIDP 171
           +P DP   DA+A + R ETLK VG+DP
Sbjct: 141 LP-DPTRKDAFARKPRAETLKDVGVDP 163

[Close]

BLAST of Cla006145 vs. NCBI nr
Match: gi|566197924|ref|XP_002318188.2| (hypothetical protein POPTR_0012s11280g [Populus trichocarpa])

HSP 1 Score: 175.3 bits (443), Expect = 9.6e-41
Identity = 89/147 (60.54%), Postives = 112/147 (76.19%), Query Frame = 1


Query: 24  TYATATAPRMKSYAPVADFSQFDHHHQQQQSKPKASRAGDFVPVYVAVGMIALSVGLGLH 83
           TYAT+T P++KSYAP AD  QF HH+ Q+    K  R GDFVPVYVA+GMIA+S+ LGL+
Sbjct: 34  TYATSTPPKLKSYAPTAD--QFGHHYHQESKHGKKVR-GDFVPVYVAIGMIAVSISLGLY 93

Query: 84  TAKQQLAHSPSVSVRKKRRETIPEVVEPEHVAEETEKFFAKSFFRKVAHVQEVEKFGDYK 143
           TAKQQ+ ++P+V VRKK RETIPEVV+P+ V +E +KF  KSFFRKVAHVQE + +G   
Sbjct: 94  TAKQQVLYAPNVRVRKKTRETIPEVVDPDKVVDEADKFIKKSFFRKVAHVQEFDHYGLEY 153

Query: 144 VPYDPLLGDAYAHRHRTETLKSVGIDP 171
           +P DP   DA+A + R ETLK VG+DP
Sbjct: 154 LP-DPTRKDAFARKPRAETLKDVGVDP 176

The following BLAST results are available for this feature:

BLAST of Cla006145 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L610_CUCSA	6.2e-79	87.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183970 PE=4 SV=1	[more]
B9I433_POPTR	6.7e-41	60.54	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s11280g PE=4 SV=2	[more]
U5FX76_POPTR	6.7e-41	60.54	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s11280g PE=4 SV=1	[more]
C6SWY9_SOYBN	3.3e-40	61.90	Uncharacterized protein OS=Glycine max GN=GLYMA_05G199300 PE=2 SV=1	[more]
A0A0B2QBM6_GLYSO	3.3e-40	61.90	Uncharacterized protein OS=Glycine soja GN=glysoja_026991 PE=4 SV=1	[more]

BLAST of Cla006145 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077579\|ref\|XP_008439275.1\|	9.4e-81	89.60	PREDICTED: uncharacterized protein LOC103484107 [Cucumis melo]	[more]
gi\|778679715\|ref\|XP_011651187.1\|	8.8e-79	87.86	PREDICTED: uncharacterized protein LOC105434852 [Cucumis sativus]	[more]
gi\|1009142119\|ref\|XP_015888551.1\|	2.6e-46	65.43	PREDICTED: uncharacterized protein LOC107423498 [Ziziphus jujuba]	[more]
gi\|566197926\|ref\|XP_006376937.1\|	9.6e-41	60.54	hypothetical protein POPTR_0012s11280g [Populus trichocarpa]	[more]
gi\|566197924\|ref\|XP_002318188.2\|	9.6e-41	60.54	hypothetical protein POPTR_0012s11280g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009628	response to abiotic stimulus
biological_process	GO:0006950	response to stress
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla006145	Cla006145	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla006145	Cla006145.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla006145.1.cds1	Cla006145.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33919	FAMILY NOT NAMED	coord: 24..170 score: 2.3
None	No IPR available	PANTHER	PTHR33919:SF2	SUBFAMILY NOT NAMED	coord: 24..170 score: 2.3