Cla005563.1 (mRNA) Watermelon (97103) v1

Overview
NameCla005563
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr9 : 33930086 .. 33930738 (-)
Sequence length474
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGTTCAAATCAAAATCCAGACCCGATTCCCCCCGAAAATTTCCTAGTAATTAGAGAAGACTATTTTGTTCATGAGGAATCCCCTGTTTTTCCCCCAACTCACCACGAAGATTTGCCAGTCGTAACTGTTGAGATAACCTCCGATGAATCTGAATCATCGGAATCATCGACTCCGGCGACTCCGGATTTGCGATCGAGAACCGTGGTCGGAGAAGCTGTTATGAGGCGTTGTGAGATGTTTAAAGCGAAGGTTGTTTCTGGAATTCTTGGATTTGGATCCTACGCTGTGAGACTAGGCTCTGTTTTTCCGGTTACTGCAATGGCGGCTCTGTTGGTGATTTTGCTGTTCTTGTTGAAGATGAAGATGAAGCTGCGGCTGCCATGGCGTCCCGGAGCTGTGGCTAAGCGTAGGGATAATGAAGAGCGTTTGCTTCTTCTCCTTAAACACAAGGATGAGGTTCGTTCTTCAATACCTAATGATTGCGTTATTAATTATTTTAACACTTTTTTCATGTTTTGTTATCTAATTTCTTTTTCTAATGTTAATTTTGAATTAAAAAAATATAAATTACCATACTAAAATTTTTGAAAATATTTATAAATAATAGTAAAATACACGGTTTTAGACTGTGATAGATCGTGATATAG

mRNA sequence

ATGGATGGTTCAAATCAAAATCCAGACCCGATTCCCCCCGAAAATTTCCTAGTAATTAGAGAAGACTATTTTGTTCATGAGGAATCCCCTGTTTTTCCCCCAACTCACCACGAAGATTTGCCAGTCGTAACTGTTGAGATAACCTCCGATGAATCTGAATCATCGGAATCATCGACTCCGGCGACTCCGGATTTGCGATCGAGAACCGTGGTCGGAGAAGCTGTTATGAGGCGTTGTGAGATGTTTAAAGCGAAGGTTGTTTCTGGAATTCTTGGATTTGGATCCTACGCTGTGAGACTAGGCTCTGTTTTTCCGGTTACTGCAATGGCGGCTCTGTTGGTGATTTTGCTGTTCTTGTTGAAGATGAAGATGAAGCTGCGGCTGCCATGGCGTCCCGGAGCTGTGGCTAAGCGTAGGGATAATGAAGAGCGTTTGCTTCTTCTCCTTAAACACAAGGATGAGATCGTGATATAG

Coding sequence (CDS)

ATGGATGGTTCAAATCAAAATCCAGACCCGATTCCCCCCGAAAATTTCCTAGTAATTAGAGAAGACTATTTTGTTCATGAGGAATCCCCTGTTTTTCCCCCAACTCACCACGAAGATTTGCCAGTCGTAACTGTTGAGATAACCTCCGATGAATCTGAATCATCGGAATCATCGACTCCGGCGACTCCGGATTTGCGATCGAGAACCGTGGTCGGAGAAGCTGTTATGAGGCGTTGTGAGATGTTTAAAGCGAAGGTTGTTTCTGGAATTCTTGGATTTGGATCCTACGCTGTGAGACTAGGCTCTGTTTTTCCGGTTACTGCAATGGCGGCTCTGTTGGTGATTTTGCTGTTCTTGTTGAAGATGAAGATGAAGCTGCGGCTGCCATGGCGTCCCGGAGCTGTGGCTAAGCGTAGGGATAATGAAGAGCGTTTGCTTCTTCTCCTTAAACACAAGGATGAGATCGTGATATAG

Protein sequence

MDGSNQNPDPIPPENFLVIREDYFVHEESPVFPPTHHEDLPVVTVEITSDESESSESSTPATPDLRSRTVVGEAVMRRCEMFKAKVVSGILGFGSYAVRLGSVFPVTAMAALLVILLFLLKMKMKLRLPWRPGAVAKRRDNEERLLLLLKHKDEIVI
Homology
[Close]
BLAST of Cla005563 vs. TrEMBL
Match: A0A0A0KRW8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G468990 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 8.5e-35
Identity = 95/162 (58.64%), Postives = 107/162 (66.05%), Query Frame = 1 

Query: 1   MDGS------NQNPDPIPPENFLVIREDYFVHEESPVFPPTHHEDLPVVTVE--ITSDES 60
           MDGS      N+NPD    ENFL                   HED PVVTVE  I S ES
Sbjct: 1   MDGSEGEEARNRNPD----ENFL-------------------HEDFPVVTVENQIASSES 60

Query: 61  ESSESSTPATPDLRSRTVVGEAVMRRCEMFKAKVVSGILGFGSYAVRLGSVFPVTAMAAL 120
           ESSESSTP + D+R R VV EA+MR CE+ KAKVVSGI+GFG Y VRL S+F  TAMA L
Sbjct: 61  ESSESSTPESSDMRLRAVVVEAIMRGCEVVKAKVVSGIVGFGWYGVRLWSIFGATAMAGL 120

Query: 121 LVILLFLLKMKMKLRLPWRPGAVAKRRDNEERLLLLLKHKDE 155
           L++LLFLL  KMK+ LPWRP  +A RRD EE L+LLLKHKDE
Sbjct: 121 LIVLLFLL--KMKVWLPWRPRGLAVRRDREEPLVLLLKHKDE 137

[Close]
BLAST of Cla005563 vs. NCBI nr
Match: gi|659131561|ref|XP_008465748.1| (PREDICTED: uncharacterized protein LOC103503357 [Cucumis melo])

HSP 1 Score: 205.3 bits (521), Expect = 7.8e-50
Identity = 111/165 (67.27%), Postives = 127/165 (76.97%), Query Frame = 1 

Query: 1   MDGSN--QNPDPIPPENFLVIREDYFVHEESPVFPPTHHEDLPVVTVEI---TSDESESS 60
           MDGS   + P+P P ENFLVIR+DYFVH ESPVFPP  HEDLPV+TVE    +SDESESS
Sbjct: 1   MDGSEGEEAPNPNPDENFLVIRDDYFVHHESPVFPPILHEDLPVLTVENHIPSSDESESS 60

Query: 61  ESS------TPATPDLRSRTVVGEAVMRRCEMFKAKVVSGILGFGSYAVRLGSVFPVTAM 120
           ESS      TP + D+R R VV EA+MR CE+ KAKVVSGI+GFG Y VRL S+F  TAM
Sbjct: 61  ESSDSSDSSTPESSDMRLRAVVVEAIMRGCEVVKAKVVSGIVGFGCYGVRLRSIFGATAM 120

Query: 121 AALLVILLFLLKMKMKLRLPWRPGAVAKRRDNEERLLLLLKHKDE 155
           A LL++LLFLLKMKMK+ LPWRP  +A RRD EE L+LLLKHKDE
Sbjct: 121 AGLLIVLLFLLKMKMKVWLPWRPRGLAVRRDKEEPLVLLLKHKDE 165

[Close]
BLAST of Cla005563 vs. NCBI nr
Match: gi|700195980|gb|KGN51157.1| (hypothetical protein Csa_5G468990 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 1.2e-34
Identity = 95/162 (58.64%), Postives = 107/162 (66.05%), Query Frame = 1 

Query: 1   MDGS------NQNPDPIPPENFLVIREDYFVHEESPVFPPTHHEDLPVVTVE--ITSDES 60
           MDGS      N+NPD    ENFL                   HED PVVTVE  I S ES
Sbjct: 1   MDGSEGEEARNRNPD----ENFL-------------------HEDFPVVTVENQIASSES 60

Query: 61  ESSESSTPATPDLRSRTVVGEAVMRRCEMFKAKVVSGILGFGSYAVRLGSVFPVTAMAAL 120
           ESSESSTP + D+R R VV EA+MR CE+ KAKVVSGI+GFG Y VRL S+F  TAMA L
Sbjct: 61  ESSESSTPESSDMRLRAVVVEAIMRGCEVVKAKVVSGIVGFGWYGVRLWSIFGATAMAGL 120

Query: 121 LVILLFLLKMKMKLRLPWRPGAVAKRRDNEERLLLLLKHKDE 155
           L++LLFLL  KMK+ LPWRP  +A RRD EE L+LLLKHKDE
Sbjct: 121 LIVLLFLL--KMKVWLPWRPRGLAVRRDREEPLVLLLKHKDE 137

The following BLAST results are available for this feature:
BLAST of Cla005563 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRW8_CUCSA8.5e-3558.64Uncharacterized protein OS=Cucumis sativus GN=Csa_5G468990 PE=4 SV=1[more]
BLAST of Cla005563 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659131561|ref|XP_008465748.1|7.8e-5067.27PREDICTED: uncharacterized protein LOC103503357 [Cucumis melo][more]
gi|700195980|gb|KGN51157.1|1.2e-3458.64hypothetical protein Csa_5G468990 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla005563Cla005563gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla005563Cla005563.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla005563.1.cds2Cla005563.1.cds2CDS
Cla005563.1.cds1Cla005563.1.cds1CDS