Cla005517.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla005517
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Pentatricopeptide repeat-containing protein (AHRD V1 -- D7LJE4_ARALL); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1
Location	Chr9 : 34411508 .. 34415590 (+)
Sequence length	2172

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Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTCGATGTCGTTGCCTGGAATTCCATGATTCTGGGTCTGGCTAAATGTGGGGAAATTGATGAGTCGAGGAAGCTGTTCGATAAAATGCCTGTTACAAATCCAATCTCTAGGAATTCTATGATTGGCGGGTATGTTAGAAATGGGATGTTCAAAGAAGCGCTGAAGCTGTTTGTCAAAATGCAAGAAGAGAGAATCCAGCCTAGTGAGTTTACTATGGTGAGTTTGTTAAATGCTTCAGCTCAAATTGGAGCACTCAAACAAGGGGAATGGATTCATGAATACATAAAGAAGAACAATCTGGAGTTGAATACCATTGTAGTTACAGCAATCATAGACATGTACTGTAAATGTGGTAGCAAAGGGAATGCCCTCCAAGTGTTTGAGAAAATACCCAACAGAGGATTATCCCGTTGGAACTCCATGATCTTTGGCCTGGCAGTGAATGGCTGCGAAAAGGTAGCAGTTTTGCTAATCAAAATGCTGGAATCTTCAGGTCTTAAACCAGATTCTATTAGCTTTATGGCTGTATTAACAGCTTGTAATCATGTTGCAACGGTGGACGAAGACAGGGGACTTTTTCTCACTGATGAAAAACACATACAGAATTGAACCATCAAGAAGGATTTCAATGAAGATGAAAAAGGTGGAGAAAGAACCAGGGGGCAGTCTGATTGAAGTTGATGATGAAGTTCATAAGTTCATAGCTGGTGGTGGGAGATTGCATCCTAAAGCTCAAGAGATCTACATTGTATTGGAACAATTGGGAGTTATGCTACAAGATAAAAAGGACTTTTGTGCAGATGAATTTTTTAAATATATGCTTGAGATATTCAATATTCTTTAAAATTGACCATATTTATTAGAATTTCGTGTTCATCAAACTTGTAAATTTAAAAAAGAAAGCTGTGTATGGGTTTATAAGATACTTTGAAGATGACATAATTGAAAGTTGATGATCTCAAGATTGATATTGCATATATGATGCTAGTTGATGCTCGTTTGGACCAATGAATAAATCGATTGAGAGAGCGTTTAGGAACTTGTTTAACCAGTCAAAAGAAATGAGTGTGGAAATTTAAAATTTAAGCCGTGGATGAGATGATGAAAATGCTTCCAAACAACTTTATTTAGGTGATGGCTAGAAATGATCCATTTTGCCTAAACTTCTTCAAAAATGACTTTATTTTAGGTTTTGTTTGACTTTTGTTCATATAATTTCAATTCAATTTTTGTCTCCATAATTTTAATAGATCTTAAAATTAGCAAATGCAACTAGTCTATTTTTTATTTTTCCTTTCAGAAAATAAAATAGTCTTTATAAGTATTCCCTCTATTAATTATAAAAATATAATTTCATGTCTTTTTTTATAAAATTATTAATATTATTTATAAAACTTTAAAGGACAAAATTAAAAATTTATTAAGAATATTATGATTAAATTTAAGATTTATTAAAAGTATATAGACTAAATTTAGACCATTCGAGTATATTACGTAGATTGGTCCAGTATATTGCCTAGAATGGAATGAAAGCTAAATCAAAGATCAAAATGGTGTTTTAAACTAAAATTGATATATTAGCTAACTTGTGAGTTTATTCCAACTTTTCACTGTCTCATCATTTTCACCTTTCAAAAGATGTTCTCCTTCGATATTCACTTTGTATTTCTATAGCACCCACAACTTCTTCTTGTTGTTTCAGTCGCTATTATAAAGCCAAAAACATTGGAAGGACTAAAGGTTTGTAACAGTTACAAATATAGAAATCACACCCAAAATATTAACAAACATAGCACAACGCAAAAGAATTAGCAAATATAGCAAAATTTAGATTTAACTCTTAAGAGTCTATTAGTGATAAACCATATCGCTAAGAGGAGTATCATATTGCTAATAGGAGTCCCATATCGTCGATAAGATTCTAGTAACAATAGAATCTATCACAGTATATTTTGTTATATTTACAATTCTTTAAAAATGTTACTGTACACTTAATTATTAATCTTAATTATTAATCTTAGAAGTACTTCCGGCTTCGTATGCAAATTTGGTTCCACCATTGAAAATTACTAAGTTGGGTTCAGTTGGCTCGATTGGGTTTTTAAGGAACATATCAGATCGGCTCGGCTCGGTTCTCAAGTTTGAGAGAAACAAATTCGGTCAATCCGAACCGTACAGGTTACATATATGTTTACTTAAGGGTTTTTCGCGAGTGGCGAGTTCGCTTCCTTCGGCCTTCACTTCCGTCTTCAAAGTCGCAGCGCCAGAGCTCTTCCTCGTTCCTTCTCCTCCGCCCGCCCGGTCGCCCTCGTTCTTTGTTGCTTCTACGCCCCTTCTCCCCTTCATTCGCCGTCGTCCCACGTCTACTCGGATCAGACTTCAGCCGCCGTCGCCTCAGAATTTTTACTTTCTTGCCTCAGCCGACAGCCGCCGGTAACATTTCTCTCCACAAATGTACTTCATTTTGAGTTAAATCTGGCCAACTTTTATTTAATGTGTTCACTGTTTGTGTTTTTATGCATGTTGTGTTGGGAATAATGCTTTCAGATAGCTCGATTCCCGGTATTTTTGAAGTTGAATCAAAGAAACAACAAAGGAAGTGAAGCTAAGTAGAGCACTAGAATGTTTTTGTTCTTCCGCTCTTGCTCGGGACCTCTCCATCAGTCCCAACAGCAACACCATATTTTCCAGATACACCTTCGAACATATGTAGACGGCACAATTCAATGGGTTCGAGATCGTGGTCTTGATCATGCTGTTGAGAGAGAGAAGAATCTTCTCCCAGTGATGAACATAAAAGATTTTATTAAATCAGAGCCGTCCAAGTCTGTTCCAGTTTCCATCATAACTCAGAAAAAGGAAGTTCTAAGAATTCCAACGCGTCCTATTGAATTGATCAGAAAATATCCTTCCATTTTCGAAGAATTTCTTCCTGGAGGCATTGGGATTCAACCTCATGTTCGGCTAACCTCTAAAGTCCTTGAACTTGATGCTGAAGAGCAGCTAACGTATCAAAGTGAGACTTGTAGACAAGAAGCAGCAGAACGACTTGTGAGGCTATTGATGCTATCAAGAGTTCATAAAATACCTGTAACCATCATTGATCAACTGAAATGGGACCTGGGTCTTCCTAAAGATTATGTTCAAAGTATAGTTCCTGATTTTCCAGATTACTTCAAAGTTGTAGGACACCAAAATTTTGCATCTGGATCAGGTGATATGCGGGCATTGGAATTGGTATGTTGGAACAATGAATTGGCCACCTCAGTTTTACAGAAGATGGCTGCAAAAGTAAAGCCTGATACATCGAAGGGAATGCATAATATTACTTTTCCTATGAAATTTTCGAATGGGTTCGTTATGGATAAGAAGTTCAAGAAGTGGGTGGATGAGTGGCAAAAGCTACCTTACATTTCTCCCTATGAAAATGCATCACATCTTTCTCCTAACAGTGATGAATCTGATAAATGGACTGTTGCAATTTTACACGAGCTTCTTCATATGCTTGTCACGAAGAAGACTGAGAAGGAAAATATATTATGCATTGGTGAGTACTTTGGTCTACGGTCAAGGTTTAAGAGAGCATTGCTTCACCATCCAGGGATATTCTACGTATCAAGTAAGGCTGGGACCTACACAGTTGTCTTGAAAGAAGGGTATAAAAGGGGTTCTGTGATTGAGAGTAGCCCCTTGATGAACACTAGAAACAAGTACCTTCATCTTATGAACACAGTGAAGGAAGACAGTAAAACAACAAACGAGCATGGTGGCACTCGCCAACAGAAGCAAGAACAGAAAGAAGGGTCAGATGATAGATCTGGGAAACAGAATGAAGCTGAATTACTCAACTCCTCGGATGATGAAGATGAAAATACTCGTAGTCATCATAACGTTCATGCTGATCGAAAAGACAATGGGGGTAAGAGACATGTTGATTTCAAAGAAAATGCTGCTAGAAACAGGGCGAGATCATCAATGAGAATGAACAAAACTGCGGAAAGACCTTCTAGGGATGTTAAAATAGAGAGGTCGAGGTTAAGTATGAATAAGAGATACCCAGTGAGGTCGAAGGTTTAG

mRNA sequence

ATGGAATTCGATGTCGTTGCCTGGAATTCCATGATTCTGGGTCTGGCTAAATGTGGGGAAATTGATGAGTCGAGGAAGCTGTTCGATAAAATGCCTGTTACAAATCCAATCTCTAGGAATTCTATGATTGGCGGGTATGTTAGAAATGGGATGTTCAAAGAAGCGCTGAAGCTGTTTGTCAAAATGCAAGAAGAGAGAATCCAGCCTAGTGAGTTTACTATGGTGAGTTTGTTAAATGCTTCAGCTCAAATTGGAGCACTCAAACAAGGGGAATGGATTCATGAATACATAAAGAAGAACAATCTGGAGTTGAATACCATTGTAGTTACAGCAATCATAGACATGTACTGTAAATGTGGTAGCAAAGGGAATGCCCTCCAAGTGTTTGAGAAAATACCCAACAGAGGATTATCCCGTTGGAACTCCATGATCTTTGGCCTGGCAGTGAATGGCTGCGAAAAGCTTGTAATCATGTTGCAACGGTGGACGAAGACAGGGGACTTTTTCTCACTGATGAAAAACACATACAGAATTGAACCATCAAGAAGGATTTCAATGAAGATGAAAAAGGTGGAGAAAGAACCAGGGGGCAGTCTGATTGAAGTTGATGATGAAGTTCATAAGTTCATAGCTGGTGGTGGGAGATTGCATCCTAAAGCTCAAGAGATCTACATTGTATTGGAACAATTGGGACACCCACAACTTCTTCTTGTTGTTTCAGTCGCTATTATAAAGCCAAAAACATTGGAAGGACTAAAGTCCCAACAGCAACACCATATTTTCCAGATACACCTTCGAACATATGTAGACGGCACAATTCAATGGGTTCGAGATCGTGGTCTTGATCATGCTGTTGAGAGAGAGAAGAATCTTCTCCCAGTGATGAACATAAAAGATTTTATTAAATCAGAGCCGTCCAAGTCTGTTCCAGTTTCCATCATAACTCAGAAAAAGGAAGTTCTAAGAATTCCAACGCGTCCTATTGAATTGATCAGAAAATATCCTTCCATTTTCGAAGAATTTCTTCCTGGAGGCATTGGGATTCAACCTCATGTTCGGCTAACCTCTAAAGTCCTTGAACTTGATGCTGAAGAGCAGCTAACGTATCAAAGTGAGACTTGTAGACAAGAAGCAGCAGAACGACTTGTGAGGCTATTGATGCTATCAAGAGTTCATAAAATACCTGTAACCATCATTGATCAACTGAAATGGGACCTGGGTCTTCCTAAAGATTATGTTCAAAGTATAGTTCCTGATTTTCCAGATTACTTCAAAGTTGTAGGACACCAAAATTTTGCATCTGGATCAGGTGATATGCGGGCATTGGAATTGGTATGTTGGAACAATGAATTGGCCACCTCAGTTTTACAGAAGATGGCTGCAAAAGTAAAGCCTGATACATCGAAGGGAATGCATAATATTACTTTTCCTATGAAATTTTCGAATGGGTTCGTTATGGATAAGAAGTTCAAGAAGTGGGTGGATGAGTGGCAAAAGCTACCTTACATTTCTCCCTATGAAAATGCATCACATCTTTCTCCTAACAGTGATGAATCTGATAAATGGACTGTTGCAATTTTACACGAGCTTCTTCATATGCTTGTCACGAAGAAGACTGAGAAGGAAAATATATTATGCATTGGTGAGTACTTTGGTCTACGGTCAAGGTTTAAGAGAGCATTGCTTCACCATCCAGGGATATTCTACGTATCAAGTAAGGCTGGGACCTACACAGTTGTCTTGAAAGAAGGGTATAAAAGGGGTTCTGTGATTGAGAGTAGCCCCTTGATGAACACTAGAAACAAGTACCTTCATCTTATGAACACAGTGAAGGAAGACAGTAAAACAACAAACGAGCATGGTGGCACTCGCCAACAGAAGCAAGAACAGAAAGAAGGGTCAGATGATAGATCTGGGAAACAGAATGAAGCTGAATTACTCAACTCCTCGGATGATGAAGATGAAAATACTCGTAGTCATCATAACGTTCATGCTGATCGAAAAGACAATGGGGGTAAGAGACATGTTGATTTCAAAGAAAATGCTGCTAGAAACAGGGCGAGATCATCAATGAGAATGAACAAAACTGCGGAAAGACCTTCTAGGGATGTTAAAATAGAGAGGTCGAGGTTAAGTATGAATAAGAGATACCCAGTGAGGTCGAAGGTTTAG

Coding sequence (CDS)

ATGGAATTCGATGTCGTTGCCTGGAATTCCATGATTCTGGGTCTGGCTAAATGTGGGGAAATTGATGAGTCGAGGAAGCTGTTCGATAAAATGCCTGTTACAAATCCAATCTCTAGGAATTCTATGATTGGCGGGTATGTTAGAAATGGGATGTTCAAAGAAGCGCTGAAGCTGTTTGTCAAAATGCAAGAAGAGAGAATCCAGCCTAGTGAGTTTACTATGGTGAGTTTGTTAAATGCTTCAGCTCAAATTGGAGCACTCAAACAAGGGGAATGGATTCATGAATACATAAAGAAGAACAATCTGGAGTTGAATACCATTGTAGTTACAGCAATCATAGACATGTACTGTAAATGTGGTAGCAAAGGGAATGCCCTCCAAGTGTTTGAGAAAATACCCAACAGAGGATTATCCCGTTGGAACTCCATGATCTTTGGCCTGGCAGTGAATGGCTGCGAAAAGCTTGTAATCATGTTGCAACGGTGGACGAAGACAGGGGACTTTTTCTCACTGATGAAAAACACATACAGAATTGAACCATCAAGAAGGATTTCAATGAAGATGAAAAAGGTGGAGAAAGAACCAGGGGGCAGTCTGATTGAAGTTGATGATGAAGTTCATAAGTTCATAGCTGGTGGTGGGAGATTGCATCCTAAAGCTCAAGAGATCTACATTGTATTGGAACAATTGGGACACCCACAACTTCTTCTTGTTGTTTCAGTCGCTATTATAAAGCCAAAAACATTGGAAGGACTAAAGTCCCAACAGCAACACCATATTTTCCAGATACACCTTCGAACATATGTAGACGGCACAATTCAATGGGTTCGAGATCGTGGTCTTGATCATGCTGTTGAGAGAGAGAAGAATCTTCTCCCAGTGATGAACATAAAAGATTTTATTAAATCAGAGCCGTCCAAGTCTGTTCCAGTTTCCATCATAACTCAGAAAAAGGAAGTTCTAAGAATTCCAACGCGTCCTATTGAATTGATCAGAAAATATCCTTCCATTTTCGAAGAATTTCTTCCTGGAGGCATTGGGATTCAACCTCATGTTCGGCTAACCTCTAAAGTCCTTGAACTTGATGCTGAAGAGCAGCTAACGTATCAAAGTGAGACTTGTAGACAAGAAGCAGCAGAACGACTTGTGAGGCTATTGATGCTATCAAGAGTTCATAAAATACCTGTAACCATCATTGATCAACTGAAATGGGACCTGGGTCTTCCTAAAGATTATGTTCAAAGTATAGTTCCTGATTTTCCAGATTACTTCAAAGTTGTAGGACACCAAAATTTTGCATCTGGATCAGGTGATATGCGGGCATTGGAATTGGTATGTTGGAACAATGAATTGGCCACCTCAGTTTTACAGAAGATGGCTGCAAAAGTAAAGCCTGATACATCGAAGGGAATGCATAATATTACTTTTCCTATGAAATTTTCGAATGGGTTCGTTATGGATAAGAAGTTCAAGAAGTGGGTGGATGAGTGGCAAAAGCTACCTTACATTTCTCCCTATGAAAATGCATCACATCTTTCTCCTAACAGTGATGAATCTGATAAATGGACTGTTGCAATTTTACACGAGCTTCTTCATATGCTTGTCACGAAGAAGACTGAGAAGGAAAATATATTATGCATTGGTGAGTACTTTGGTCTACGGTCAAGGTTTAAGAGAGCATTGCTTCACCATCCAGGGATATTCTACGTATCAAGTAAGGCTGGGACCTACACAGTTGTCTTGAAAGAAGGGTATAAAAGGGGTTCTGTGATTGAGAGTAGCCCCTTGATGAACACTAGAAACAAGTACCTTCATCTTATGAACACAGTGAAGGAAGACAGTAAAACAACAAACGAGCATGGTGGCACTCGCCAACAGAAGCAAGAACAGAAAGAAGGGTCAGATGATAGATCTGGGAAACAGAATGAAGCTGAATTACTCAACTCCTCGGATGATGAAGATGAAAATACTCGTAGTCATCATAACGTTCATGCTGATCGAAAAGACAATGGGGGTAAGAGACATGTTGATTTCAAAGAAAATGCTGCTAGAAACAGGGCGAGATCATCAATGAGAATGAACAAAACTGCGGAAAGACCTTCTAGGGATGTTAAAATAGAGAGGTCGAGGTTAAGTATGAATAAGAGATACCCAGTGAGGTCGAAGGTTTAG

Protein sequence

MEFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNNLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIMLQRWTKTGDFFSLMKNTYRIEPSRRISMKMKKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLEQLGHPQLLLVVSVAIIKPKTLEGLKSQQQHHIFQIHLRTYVDGTIQWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPVSIITQKKEVLRIPTRPIELIRKYPSIFEEFLPGGIGIQPHVRLTSKVLELDAEEQLTYQSETCRQEAAERLVRLLMLSRVHKIPVTIIDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGSGDMRALELVCWNNELATSVLQKMAAKVKPDTSKGMHNITFPMKFSNGFVMDKKFKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGEYFGLRSRFKRALLHHPGIFYVSSKAGTYTVVLKEGYKRGSVIESSPLMNTRNKYLHLMNTVKEDSKTTNEHGGTRQQKQEQKEGSDDRSGKQNEAELLNSSDDEDENTRSHHNVHADRKDNGGKRHVDFKENAARNRARSSMRMNKTAERPSRDVKIERSRLSMNKRYPVRSKV

Homology

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BLAST of Cla005517 vs. Swiss-Prot
Match: PP200_ARATH (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 9.5e-50
Identity = 97/152 (63.82%), Postives = 115/152 (75.66%), Query Frame = 1


Query: 3   FDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKM 62
           FDVVAWNSMI+G AKCG ID+++ LFD+MP  N +S NSMI G+VRNG FK+AL +F +M
Sbjct: 190 FDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREM 249

Query: 63  QEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNNLELNTIVVTAIIDMYCKCGSK 122
           QE+ ++P  FTMVSLLNA A +GA +QG WIHEYI +N  ELN+IVVTA+IDMYCKCG  
Sbjct: 250 QEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCI 309

Query: 123 GNALQVFEKIPNRGLSRWNSMIFGLAVNGCEK 155
              L VFE  P + LS WNSMI GLA NG E+
Sbjct: 310 EEGLNVFECAPKKQLSCWNSMILGLANNGFEE 341

HSP 2 Score: 81.3 bits (199), Expect = 4.9e-14
Identity = 66/242 (27.27%), Postives = 112/242 (46.28%), Query Frame = 1


Query: 2   EFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVK 61
           E + +   ++I    KCG I+E   +F+  P       NSMI G   NG  + A+ LF +
Sbjct: 290 ELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSE 349

Query: 62  MQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIK-KNNLELNTIVVTAIIDMYCKCG 121
           ++   ++P   + + +L A A  G + + +     +K K  +E +    T ++++    G
Sbjct: 350 LERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAG 409

Query: 122 SKGNALQVFEKIP-NRGLSRWNSMIFGLAVNGCEKLVIMLQRWTKTGD-----FFSLMKN 181
               A  + + +P       W+S++      G  ++     +  K  D      + L+ N
Sbjct: 410 LLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAKCLKKLDPDETCGYVLLSN 469

Query: 182 TYRI------EPSRRISMKMKKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLE 231
            Y           +R+ MK +++EKE G S IEVD EVH+FI+ GG  HPK+ EIY +L+
Sbjct: 470 AYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEVHEFISCGG-THPKSAEIYSLLD 529

HSP 3 Score: 32.7 bits (73), Expect = 2.0e+01
Identity = 26/132 (19.70%), Postives = 60/132 (45.45%), Query Frame = 1


Query: 1   MEFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFV 60
           +E D    N+M+     CG + E+ ++F  M   + ++ NSMI G+ + G+  +A  LF 
Sbjct: 157 LEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLF- 216

Query: 61  KMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNNLELNTIVVTAIIDMYCKCG 120
              +E  Q +  +  S+++   + G  K    +   +++ +++ +   + ++++     G
Sbjct: 217 ---DEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLG 276

Query: 121 SKGNALQVFEKI 133
           +      + E I
Sbjct: 277 ASEQGRWIHEYI 284

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BLAST of Cla005517 vs. Swiss-Prot
Match: PPR65_ARATH (Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 8.1e-33
Identity = 69/148 (46.62%), Postives = 96/148 (64.86%), Query Frame = 1


Query: 4   DVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQ 63
           +V  W SM+ G    G IDE+R LF++ PV + +   +M+ GYV+   F EAL+LF  MQ
Sbjct: 212 NVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQ 271

Query: 64  EERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNNLELNTIVVTAIIDMYCKCGSKG 123
              I+P  F +VSLL   AQ GAL+QG+WIH YI +N + ++ +V TA++DMY KCG   
Sbjct: 272 TAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIE 331

Query: 124 NALQVFEKIPNRGLSRWNSMIFGLAVNG 152
            AL+VF +I  R  + W S+I+GLA+NG
Sbjct: 332 TALEVFYEIKERDTASWTSLIYGLAMNG 359

HSP 2 Score: 100.9 bits (250), Expect = 6.0e-20
Identity = 53/152 (34.87%), Postives = 89/152 (58.55%), Query Frame = 1


Query: 1   MEFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFV 60
           +EFD    NS++   A  G+I+ + K+FD+MP  + +S N +I  YV NG F++A+ +F 
Sbjct: 77  LEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFK 136

Query: 61  KM-QEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNNLELNTIVVTAIIDMYCKC 120
           +M QE  ++  E T+VS L+A + +  L+ GE I+ ++     E++  +  A++DM+CKC
Sbjct: 137 RMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFV-VTEFEMSVRIGNALVDMFCKC 196

Query: 121 GSKGNALQVFEKIPNRGLSRWNSMIFGLAVNG 152
           G    A  VF+ + ++ +  W SM+FG    G
Sbjct: 197 GCLDKARAVFDSMRDKNVKCWTSMVFGYVSTG 227

[Close]

BLAST of Cla005517 vs. Swiss-Prot
Match: PP257_ARATH (Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 4.0e-32
Identity = 65/155 (41.94%), Postives = 101/155 (65.16%), Query Frame = 1


Query: 5   VVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQE 64
           +V+W +M+ GL    ++D +  +F++MP+ N +S  +MI  YV+N    EA +LF +MQ 
Sbjct: 185 IVSWTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQV 244

Query: 65  ERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNNLELNTIVVTAIIDMYCKCGSKGN 124
           + ++P+EFT+V+LL AS Q+G+L  G W+H+Y  KN   L+  + TA+IDMY KCGS  +
Sbjct: 245 DDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQD 304

Query: 125 ALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIML 160
           A +VF+ +  + L+ WNSMI  L V+GC +  + L
Sbjct: 305 ARKVFDVMQGKSLATWNSMITSLGVHGCGEEALSL 339

HSP 2 Score: 54.7 bits (130), Expect = 4.9e-06
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 1


Query: 16  AKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEE-RIQPSEFTM 75
           +KCG + ++RK+FD M   +  + NSMI     +G  +EAL LF +M+EE  ++P   T 
Sbjct: 297 SKCGSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAITF 356

Query: 76  VSLLNASAQIGALKQG 91
           V +L+A A  G +K G
Sbjct: 357 VGVLSACANTGNVKDG 372

HSP 3 Score: 40.0 bits (92), Expect = 1.3e-01
Identity = 22/59 (37.29%), Postives = 31/59 (52.54%), Query Frame = 1


Query: 4   DVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKM 63
           DV   N+++    KCG+ D  RK+FDKMP  + +S  +M+ G V N     A  +F +M
Sbjct: 153 DVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQM 211

[Close]

BLAST of Cla005517 vs. Swiss-Prot
Match: PP321_ARATH (Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2)

HSP 1 Score: 137.5 bits (345), Expect = 5.8e-31
Identity = 66/154 (42.86%), Postives = 98/154 (63.64%), Query Frame = 1


Query: 2   EFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVK 61
           E +V +WN MI G A  G + E++++FD MPV + +S N+M+  Y   G + E L++F K
Sbjct: 234 ERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNK 293

Query: 62  MQEERIQ-PSEFTMVSLLNASAQIGALKQGEWIHEYIKKNNLELNTIVVTAIIDMYCKCG 121
           M ++  + P  FT+VS+L+A A +G+L QGEW+H YI K+ +E+   + TA++DMY KCG
Sbjct: 294 MLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCG 353

Query: 122 SKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEK 155
               AL+VF     R +S WNS+I  L+V+G  K
Sbjct: 354 KIDKALEVFRATSKRDVSTWNSIISDLSVHGLGK 387

HSP 2 Score: 58.5 bits (140), Expect = 3.4e-07
Identity = 36/152 (23.68%), Postives = 71/152 (46.71%), Query Frame = 1


Query: 4   DVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQ 63
           DV   N+++    + G  + +RK+ D+MPV + +S NS++  Y+  G+  EA  LF +M+
Sbjct: 174 DVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEME 233

Query: 64  EERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNNLELNTIVVTAIIDMYCKCGSKG 123
           E  ++   F    +++  A  G +K+ + + + +   ++     +VTA    Y   G   
Sbjct: 234 ERNVESWNF----MISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTA----YAHVGCYN 293

Query: 124 NALQVFEKIPNRGLSRWNSMIFGLAVNGCEKL 156
             L+VF K+ +    + +       ++ C  L
Sbjct: 294 EVLEVFNKMLDDSTEKPDGFTLVSVLSACASL 317

HSP 3 Score: 47.8 bits (112), Expect = 6.0e-04
Identity = 37/145 (25.52%), Postives = 68/145 (46.90%), Query Frame = 1


Query: 33  VTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEW 92
           VT+    N+++  Y R+G F+ A K+  +M          +  SLL+A  + G + +   
Sbjct: 172 VTDVFVENTLVNVYGRSGYFEIARKVLDRMPVR----DAVSWNSLLSAYLEKGLVDEARA 231

Query: 93  IHEYIKKNNLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGC 152
           + + +++ N+E    +++     Y   G    A +VF+ +P R +  WN+M+   A  GC
Sbjct: 232 LFDEMEERNVESWNFMISG----YAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGC 291

Query: 153 EKLVI-----MLQRWTKTGDFFSLM 173
              V+     ML   T+  D F+L+
Sbjct: 292 YNEVLEVFNKMLDDSTEKPDGFTLV 308

[Close]

BLAST of Cla005517 vs. Swiss-Prot
Match: PP295_ARATH (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.7e-30
Identity = 70/154 (45.45%), Postives = 104/154 (67.53%), Query Frame = 1


Query: 4   DVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQ 63
           D+ AWNS++   AK G ID++RKLFD+MP  N IS + +I GYV  G +KEAL LF +MQ
Sbjct: 127 DLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQ 186

Query: 64  -----EERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNNLELNTIVVTAIIDMYCK 123
                E  ++P+EFTM ++L+A  ++GAL+QG+W+H YI K ++E++ ++ TA+IDMY K
Sbjct: 187 LPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAK 246

Query: 124 CGSKGNALQVFEKI-PNRGLSRWNSMIFGLAVNG 152
           CGS   A +VF  +   + +  +++MI  LA+ G
Sbjct: 247 CGSLERAKRVFNALGSKKDVKAYSAMICCLAMYG 280

HSP 2 Score: 65.1 bits (157), Expect = 3.6e-09
Identity = 58/246 (23.58%), Postives = 113/246 (45.93%), Query Frame = 1


Query: 1   MEFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNS-MIGGYVRNGMFKEALKLF 60
           +E D+V   ++I   AKCG ++ ++++F+ +     +   S MI      G+  E  +LF
Sbjct: 230 VEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLF 289

Query: 61  VKMQ-EERIQPSEFTMVSLLNASAQIGALKQGE-WIHEYIKKNNLELNTIVVTAIIDMYC 120
            +M   + I P+  T V +L A    G + +G+ +    I++  +  +      ++D+Y 
Sbjct: 290 SEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYG 349

Query: 121 KCGSKGNALQVFEKIPNR-GLSRWNSMIFGLAVNG----CE-KLVIMLQRWTKTGDFFSL 180
           + G    A      +P    +  W S++ G  + G    CE  L  +++        + L
Sbjct: 350 RSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVL 409

Query: 181 MKNTYRIEPSR-------RISMKMKKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIY 231
           + N Y  +  R       R  M++K + K PG S +EV+  VH+F+  G     +++ IY
Sbjct: 410 LSNVYA-KTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVV-GDESQQESERIY 469

HSP 3 Score: 46.6 bits (109), Expect = 1.3e-03
Identity = 26/96 (27.08%), Postives = 46/96 (47.92%), Query Frame = 1


Query: 56  LKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNNLELNTIVVTAIIDM 115
           + ++++M+  R+ P   T   LL +      L  G+  H  I    L+ +  V T++++M
Sbjct: 47  ISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNM 106

Query: 116 YCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNG 152
           Y  CG   +A +VF+   ++ L  WNS++   A  G
Sbjct: 107 YSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAG 142

[Close]

BLAST of Cla005517 vs. TrEMBL
Match: A0A0A0KRP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G420350 PE=4 SV=1)

HSP 1 Score: 758.1 bits (1956), Expect = 1.0e-215
Identity = 379/450 (84.22%), Postives = 409/450 (90.89%), Query Frame = 1


Query: 253 KSQQQHHIFQIHLRTYVDGTIQWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPVS 312
           ++Q Q HIFQIHLRTYVDGTI WVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVP+S
Sbjct: 14  RTQLQLHIFQIHLRTYVDGTINWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPLS 73

Query: 313 IITQKKEVLRIPTRPIELIRKYPSIFEEFLPGGIGIQPHVRLTSKVLELDAEEQLTYQSE 372
           IITQK+E+LRIPTRPI+LIRKYPSIFEEFLPGGIGIQPHV+LTSKVLELDAEEQLTYQ+ 
Sbjct: 74  IITQKREILRIPTRPIDLIRKYPSIFEEFLPGGIGIQPHVKLTSKVLELDAEEQLTYQTS 133

Query: 373 TCRQEAAERLVRLLMLSRVHKIPVTIIDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNF 432
           TCRQ+AA+RLV+LLMLSRVHK+PV+IIDQLKWDLGLPKDYV+SIVPDFPDYFKVVGHQNF
Sbjct: 134 TCRQQAADRLVKLLMLSRVHKVPVSIIDQLKWDLGLPKDYVESIVPDFPDYFKVVGHQNF 193

Query: 433 ASGSGDMRALELVCWNNELATSVLQKMAAKVKPDTSKGMHNITFPMKFSNGFVMDKKFKK 492
           ASGSGDMR LELVCWNNELATSV++KMA KVKPD SKGM+ ITFPMK+SNGF MDKKFKK
Sbjct: 194 ASGSGDMRVLELVCWNNELATSVIEKMAVKVKPDKSKGMY-ITFPMKYSNGFEMDKKFKK 253

Query: 493 WVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGEYFG 552
           WVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGEYFG
Sbjct: 254 WVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGEYFG 313

Query: 553 LRSRFKRALLHHPGIFYVSSKAGTYTVVLKEGYKRGSVIESSPLMNTRNKYLHLMNTVKE 612
           LRSRFKRALLHHPGIFY+SSKAGTYTVVLKEGYKRGSV+ES+PLMN RNKYLHLMNTV+E
Sbjct: 314 LRSRFKRALLHHPGIFYISSKAGTYTVVLKEGYKRGSVVESNPLMNIRNKYLHLMNTVEE 373

Query: 613 DSKTTNEHGGTRQQKQEQKEGSDDRSGKQNEAELLNSSD--DEDENTRSHHNVHADRKDN 672
           DSKTT +H  TRQQKQEQKE S+   G+QNEAELLNSSD  DEDENT SH NV AD++DN
Sbjct: 374 DSKTTTKHIDTRQQKQEQKEESNHAPGEQNEAELLNSSDDEDEDENTSSHRNVCADQRDN 433

Query: 673 -GGKRHVDFKENAARNRARSSMRMNKTAER 700
             G R  + + +  R   R   R N   ER
Sbjct: 434 IRGDRRGNVRCD-RRGNVRGDRRDNVRGER 461

[Close]

BLAST of Cla005517 vs. TrEMBL
Match: M5VK57_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024610mg PE=4 SV=1)

HSP 1 Score: 537.7 bits (1384), Expect = 2.1e-149
Identity = 279/491 (56.82%), Postives = 354/491 (72.10%), Query Frame = 1


Query: 254 SQQQHHIFQIHLRTYVDGTIQWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPVSI 313
           SQ  HH    H   +VD T +WVRDRGLDHAVEREKNL P++NIK+FIKSEPSKS+P+SI
Sbjct: 16  SQSSHHSHSRHRTFFVDATTKWVRDRGLDHAVEREKNLRPMVNIKNFIKSEPSKSLPISI 75

Query: 314 ITQKKEVLRIPTRPIELIRKYPSIFEEFLPGGIGIQPHVRLTSKVLELDAEEQLTYQSET 373
           I Q +E L IPTRPI+ IRKYPSIFEEFLPGG  IQPHVRLT +VL+LDAEE+L YQSE+
Sbjct: 76  IAQNRESLMIPTRPIDFIRKYPSIFEEFLPGGGAIQPHVRLTGQVLDLDAEEELMYQSES 135

Query: 374 CRQEAAERLVRLLMLSRVHKIPVTIIDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFA 433
            RQ+ A+RL++LLML R +K+P+ +I+ LKWDLGLP DY +S+V ++PDYF +V  +N A
Sbjct: 136 YRQDVADRLLKLLMLVRTNKLPLNVIESLKWDLGLPHDYQKSLVHEYPDYFNIVVGKNSA 195

Query: 434 SGSGDMRALELVCWNNELATSVLQK-MAAKVKPDTSKGMHNIT------------FPMKF 493
           SG  D+R LELVCW NE+ATSV +K  AAK K  ++K    ++            FPM+F
Sbjct: 196 SGWKDLRDLELVCWRNEMATSVFEKNAAAKEKKASAKKKRALSGDSPSKEEDQCVFPMQF 255

Query: 494 SNGFVMDKKFKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTE 553
           S GF MDKK KKW+DEWQKLPY+SPYENA+HLS  SDESDKW VAILHELLH+LV KKT+
Sbjct: 256 SRGFEMDKKLKKWIDEWQKLPYVSPYENAAHLSSKSDESDKWVVAILHELLHILVPKKTD 315

Query: 554 KENILCIGEYFGLRSRFKRALLHHPGIFYVSSKAGTYTVVLKEGYKRGSVIESSPLMNTR 613
           +EN+LC+GEY GLRSRFK+ALLHHPGIFY+S+K GTYTVVL+EGYKRG++IE+  LMN R
Sbjct: 316 RENLLCLGEYLGLRSRFKQALLHHPGIFYLSNKIGTYTVVLREGYKRGTIIENHQLMNMR 375

Query: 614 NKYLHLMNTVKEDSKTTNEHGGTRQQKQ--------EQKEGSDDRSGKQNEAELLNSSD- 673
           ++Y+HLMNTVKEDSK  +  GG+  +K+        + +E  DD S ++ E EL +SSD 
Sbjct: 376 SQYIHLMNTVKEDSKMVSVPGGSTLEKKAVVDVPKGKGEEKEDDESEEEQEGELRDSSDT 435

Query: 674 --------DEDENTRSHHNVHADRKDNGGKR----HVDFK---ENAARNRA--RSSMRMN 706
                   DE++   S  ++     +N G+R    H D K    NA R  +  R +   +
Sbjct: 436 EFLYDDDSDEEDEDLSETSIEKRGINNRGRRGRKSHFDGKTPSRNAERGTSGGRKARNSD 495

[Close]

BLAST of Cla005517 vs. TrEMBL
Match: F6HYS7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00460 PE=4 SV=1)

HSP 1 Score: 506.9 bits (1304), Expect = 4.0e-140
Identity = 258/458 (56.33%), Postives = 333/458 (72.71%), Query Frame = 1


Query: 258 HHIFQIHLRTYVDGTIQWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPVSIITQK 317
           HH  +   R++ D TI+ V+DRGL+HAVE+E++L P++NIK+ IKSEPSKSVP+S+I+Q 
Sbjct: 12  HHYHRQSRRSFGDATIKRVQDRGLEHAVEKERSLKPMLNIKNLIKSEPSKSVPISLISQN 71

Query: 318 KEVLRIPTRPIELIRKYPSIFEEFLPGGIGIQPHVRLTSKVLELDAEEQLTYQSETCRQE 377
           KE L + TRPI+ IR++PSIFEEFLPGGI I PHVRLT +VL LD EE   +Q+E  R++
Sbjct: 72  KEALGLWTRPIDFIRRFPSIFEEFLPGGIKIHPHVRLTPEVLSLDGEELSIFQTENYRKQ 131

Query: 378 AAERLVRLLMLSRVHKIPVTIIDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGSG 437
           AA+RL++LLMLSR++KIP+TI+D+LKWDLGLP+DYV+++VP+FPDYF+V   ++  SGS 
Sbjct: 132 AADRLLKLLMLSRINKIPLTIVDRLKWDLGLPQDYVETLVPEFPDYFQVTSAEDHFSGSR 191

Query: 438 DMRALELVCWNNELATSVLQKMAAKVKPDTSKGMHNITFPMKFSNGFVMDKKFKKWVDEW 497
            MR LELVCW+NELA SV++K A   +    KGM  I FP+ FS GF MDKK KKWVDEW
Sbjct: 192 GMRVLELVCWSNELAISVMEKKAMAGQGGFEKGM-AIAFPLHFSRGFEMDKKMKKWVDEW 251

Query: 498 QKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGEYFGLRSRF 557
           QKL YISPYENASHL P SDESDKW V +LHELLH+ V +KT+KENILC+GEY GLRSRF
Sbjct: 252 QKLVYISPYENASHLPPKSDESDKWAVGLLHELLHLFVPRKTDKENILCLGEYMGLRSRF 311

Query: 558 KRALLHHPGIFYVSSKAGTYTVVLKEGYKRGSVIESSPLMNTRNKYLHLMNTVKEDSKTT 617
           KRAL++HPGIFY+S+K G +TV+LKE YKR  +IE  PLM  R +Y+HLMNT KED+K  
Sbjct: 312 KRALVNHPGIFYLSTKTGMHTVLLKEAYKRDLLIEKHPLMEMRYQYIHLMNTAKEDNKPI 371

Query: 618 NEHGGTRQQKQEQKEGSDDRSGKQNEAELLNSSDD------EDENTRSHHNVHADRKDNG 677
           N  G     K+EQK  SD    K  + E   S ++       D    S  +   + +D+ 
Sbjct: 372 NAPG--TSPKKEQKNASDASGEKSEQVEDAESGEEYEGELHSDVEEASDDDYEDEDEDDE 431

Query: 678 GKRHVDFKENAARNRARSSMRMNKTAERPSRDVKIERS 710
            + H D  +N A NR R++ ++N  A  P R+   ERS
Sbjct: 432 IETHRDAHQNVASNR-RTTRKVNFDARGPLRNPVQERS 465

[Close]

BLAST of Cla005517 vs. TrEMBL
Match: A5BJQ8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018330 PE=4 SV=1)

HSP 1 Score: 503.4 bits (1295), Expect = 4.5e-139
Identity = 257/458 (56.11%), Postives = 332/458 (72.49%), Query Frame = 1


Query: 258 HHIFQIHLRTYVDGTIQWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPVSIITQK 317
           HH  +   R++ D TI+ V+DRGL+HAVE+E++L P++NIK+ IKSEPSKSVP+S+I+Q 
Sbjct: 12  HHYHRQSRRSFGDATIKRVQDRGLEHAVEKERSLKPMLNIKNLIKSEPSKSVPISLISQN 71

Query: 318 KEVLRIPTRPIELIRKYPSIFEEFLPGGIGIQPHVRLTSKVLELDAEEQLTYQSETCRQE 377
           KE L + TRPI+ IR++PSIFEEFLPGGI I PHVRLT +VL LD EE   +Q+E  R++
Sbjct: 72  KEALGLWTRPIDFIRRFPSIFEEFLPGGIKIHPHVRLTPEVLSLDGEELSIFQTENYRKQ 131

Query: 378 AAERLVRLLMLSRVHKIPVTIIDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGSG 437
           AA+RL++LLMLSR++KIP+TI+D+LKWDLGLP+DYV+++VP+FPDYF+V   ++  SGS 
Sbjct: 132 AADRLLKLLMLSRINKIPLTIVDRLKWDLGLPQDYVETLVPEFPDYFQVTSAEDHFSGSR 191

Query: 438 DMRALELVCWNNELATSVLQKMAAKVKPDTSKGMHNITFPMKFSNGFVMDKKFKKWVDEW 497
            MR LELVCW+NELA SV++K A   +    KGM  I FP+ FS GF MDKK KKWVDEW
Sbjct: 192 GMRVLELVCWSNELAISVMEKKAMAGQGGFEKGM-AIAFPLHFSRGFEMDKKMKKWVDEW 251

Query: 498 QKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGEYFGLRSRF 557
           QKL YISPYENASHL P SDESDKW V +LHELLH+ V +KT+KENILC+GEY GLRSRF
Sbjct: 252 QKLVYISPYENASHLPPKSDESDKWAVGLLHELLHLFVPRKTDKENILCLGEYMGLRSRF 311

Query: 558 KRALLHHPGIFYVSSKAGTYTVVLKEGYKRGSVIESSPLMNTRNKYLHLMNTVKEDSKTT 617
           KRAL++ PGIFY+S+K G +TV+LKE YKR  +IE  PLM  R +Y+HLMNT KED+K  
Sbjct: 312 KRALVNXPGIFYLSTKTGMHTVLLKEAYKRDLLIEKHPLMEMRYQYIHLMNTAKEDNKPI 371

Query: 618 NEHGGTRQQKQEQKEGSDDRSGKQNEAELLNSSDD------EDENTRSHHNVHADRKDNG 677
           N  G     K+EQK  SD    K  + E   S ++       D    S  +   + +D+ 
Sbjct: 372 NAPG--TSPKKEQKNASDASGEKSEQVEDAESGEEYEGELHSDVEEASDDDYEDEDEDDE 431

Query: 678 GKRHVDFKENAARNRARSSMRMNKTAERPSRDVKIERS 710
            + H D  +N A NR R++ ++N  A  P R+   ERS
Sbjct: 432 IETHRDAHQNVASNR-RTTRKVNFDARGPLRNPVQERS 465

[Close]

BLAST of Cla005517 vs. TrEMBL
Match: A0A0D2RS78_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G024300 PE=4 SV=1)

HSP 1 Score: 496.1 bits (1276), Expect = 7.1e-137
Identity = 245/445 (55.06%), Postives = 323/445 (72.58%), Query Frame = 1


Query: 266 RTYVDGT-----IQWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPVSIITQKKEV 325
           RT++DG      +++VRDRGLDHAVEREKNL P++N+K+ IKSEPSKS+P+SII+Q K+ 
Sbjct: 54  RTFMDGAAATTAVKFVRDRGLDHAVEREKNLRPLLNVKNLIKSEPSKSLPISIISQNKDS 113

Query: 326 LRIPTRPIELIRKYPSIFEEFLPGGIGIQPHVRLTSKVLELDAEEQLTYQSETCRQEAAE 385
           L+IP+RPIE IRKYPS+F EFLPGGIGI PH++LT +VL++DA+E L Y+S++ RQ  A 
Sbjct: 114 LKIPSRPIEFIRKYPSVFHEFLPGGIGIHPHIKLTQEVLDIDADEHLVYESDSYRQLVAN 173

Query: 386 RLVRLLMLSRVHKIPVTIIDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGSGDMR 445
           RL++LLM+SR++KIP+ I+D+LKWDLGLP++Y++++VPDFPD F+VVG       S +  
Sbjct: 174 RLLKLLMISRMNKIPINILDKLKWDLGLPQNYLKTLVPDFPDCFRVVG-------SNESG 233

Query: 446 ALELVCWNNELATSVLQKMAAKVKPDTSKGMHNITFPMKFSNGFVMDKKFKKWVDEWQKL 505
            LELVCW++ELA S+L+K A +     SKGM  + FP+KFS GF MDKK KKW D+WQKL
Sbjct: 234 QLELVCWSDELAVSILEKKAMEGGSGYSKGMP-LAFPVKFSKGFEMDKKVKKWWDDWQKL 293

Query: 506 PYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGEYFGLRSRFKRA 565
           PY+SPYENA HLSP +DESDKW  A+LHE+L++ V KK E++++LCIGEY G+RSRFKR 
Sbjct: 294 PYVSPYENALHLSPKTDESDKWAAAVLHEILNLFVAKKAERDDVLCIGEYLGIRSRFKRV 353

Query: 566 LLHHPGIFYVSSKAGTYTVVLKEGYKRGSVIESSPLMNTRNKYLHLMNTVKEDSKTTNEH 625
           LLHHP IFY+SSK GTYTVVLKE YKRG +IE++PLMN RN+YLHLM+TVKE  K  +  
Sbjct: 354 LLHHPHIFYLSSKIGTYTVVLKEAYKRGLLIENNPLMNVRNRYLHLMHTVKEHGKDISMS 413

Query: 626 GGTRQQKQEQKEGSDDRSGKQNEAELLNSSDDEDENTRSHHNVHADRKDNGGKRHVDFKE 685
            GT Q+K+     S   +G           D E+EN     +      +NG     D   
Sbjct: 414 PGTNQEKKAASNASKKEAG---------DDDSEEENNGLSVSFSGSETENG-----DSGR 473

Query: 686 NAARNRARSSMRMNKTAERPSRDVK 706
             +R     S R   T++R + D+K
Sbjct: 474 RGSREAVALSRRTTTTSKRKNGDLK 476

[Close]

BLAST of Cla005517 vs. NCBI nr
Match: gi|778702601|ref|XP_004151592.2| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 759.6 bits (1960), Expect = 5.0e-216
Identity = 383/472 (81.14%), Postives = 417/472 (88.35%), Query Frame = 1


Query: 253 KSQQQHHIFQIHLRTYVDGTIQWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPVS 312
           ++Q Q HIFQIHLRTYVDGTI WVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVP+S
Sbjct: 14  RTQLQLHIFQIHLRTYVDGTINWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPLS 73

Query: 313 IITQKKEVLRIPTRPIELIRKYPSIFEEFLPGGIGIQPHVRLTSKVLELDAEEQLTYQSE 372
           IITQK+E+LRIPTRPI+LIRKYPSIFEEFLPGGIGIQPHV+LTSKVLELDAEEQLTYQ+ 
Sbjct: 74  IITQKREILRIPTRPIDLIRKYPSIFEEFLPGGIGIQPHVKLTSKVLELDAEEQLTYQTS 133

Query: 373 TCRQEAAERLVRLLMLSRVHKIPVTIIDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNF 432
           TCRQ+AA+RLV+LLMLSRVHK+PV+IIDQLKWDLGLPKDYV+SIVPDFPDYFKVVGHQNF
Sbjct: 134 TCRQQAADRLVKLLMLSRVHKVPVSIIDQLKWDLGLPKDYVESIVPDFPDYFKVVGHQNF 193

Query: 433 ASGSGDMRALELVCWNNELATSVLQKMAAKVKPDTSKGMHNITFPMKFSNGFVMDKKFKK 492
           ASGSGDMR LELVCWNNELATSV++KMA KVKPD SKGM+ ITFPMK+SNGF MDKKFKK
Sbjct: 194 ASGSGDMRVLELVCWNNELATSVIEKMAVKVKPDKSKGMY-ITFPMKYSNGFEMDKKFKK 253

Query: 493 WVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGEYFG 552
           WVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGEYFG
Sbjct: 254 WVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGEYFG 313

Query: 553 LRSRFKRALLHHPGIFYVSSKAGTYTVVLKEGYKRGSVIESSPLMNTRNKYLHLMNTVKE 612
           LRSRFKRALLHHPGIFY+SSKAGTYTVVLKEGYKRGSV+ES+PLMN RNKYLHLMNTV+E
Sbjct: 314 LRSRFKRALLHHPGIFYISSKAGTYTVVLKEGYKRGSVVESNPLMNIRNKYLHLMNTVEE 373

Query: 613 DSKTTNEHGGTRQQKQEQKEGSDDRSGKQNEAELLNSSD--DEDENTRSHHNVHADRKDN 672
           DSKTT +H  TRQQKQEQKE S+   G+QNEAELLNSSD  DEDENT SH NV AD++DN
Sbjct: 374 DSKTTTKHIDTRQQKQEQKEESNHAPGEQNEAELLNSSDDEDEDENTSSHRNVCADQRDN 433

Query: 673 -GGKRHVDFKENAARNRARSSMRMNKTAERPSRDVKIERSRLSMNKRYPVRS 722
             G R  + + +  R   R   R N   ER        R  +  ++R  VR+
Sbjct: 434 IRGDRRGNVRCD-RRGNVRGDRRDNVRGERRDNVRGERRDHVRADRRDHVRA 483

[Close]

BLAST of Cla005517 vs. NCBI nr
Match: gi|778702604|ref|XP_011655231.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 758.1 bits (1956), Expect = 1.4e-215
Identity = 379/450 (84.22%), Postives = 409/450 (90.89%), Query Frame = 1


Query: 253 KSQQQHHIFQIHLRTYVDGTIQWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPVS 312
           ++Q Q HIFQIHLRTYVDGTI WVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVP+S
Sbjct: 14  RTQLQLHIFQIHLRTYVDGTINWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPLS 73

Query: 313 IITQKKEVLRIPTRPIELIRKYPSIFEEFLPGGIGIQPHVRLTSKVLELDAEEQLTYQSE 372
           IITQK+E+LRIPTRPI+LIRKYPSIFEEFLPGGIGIQPHV+LTSKVLELDAEEQLTYQ+ 
Sbjct: 74  IITQKREILRIPTRPIDLIRKYPSIFEEFLPGGIGIQPHVKLTSKVLELDAEEQLTYQTS 133

Query: 373 TCRQEAAERLVRLLMLSRVHKIPVTIIDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNF 432
           TCRQ+AA+RLV+LLMLSRVHK+PV+IIDQLKWDLGLPKDYV+SIVPDFPDYFKVVGHQNF
Sbjct: 134 TCRQQAADRLVKLLMLSRVHKVPVSIIDQLKWDLGLPKDYVESIVPDFPDYFKVVGHQNF 193

Query: 433 ASGSGDMRALELVCWNNELATSVLQKMAAKVKPDTSKGMHNITFPMKFSNGFVMDKKFKK 492
           ASGSGDMR LELVCWNNELATSV++KMA KVKPD SKGM+ ITFPMK+SNGF MDKKFKK
Sbjct: 194 ASGSGDMRVLELVCWNNELATSVIEKMAVKVKPDKSKGMY-ITFPMKYSNGFEMDKKFKK 253

Query: 493 WVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGEYFG 552
           WVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGEYFG
Sbjct: 254 WVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGEYFG 313

Query: 553 LRSRFKRALLHHPGIFYVSSKAGTYTVVLKEGYKRGSVIESSPLMNTRNKYLHLMNTVKE 612
           LRSRFKRALLHHPGIFY+SSKAGTYTVVLKEGYKRGSV+ES+PLMN RNKYLHLMNTV+E
Sbjct: 314 LRSRFKRALLHHPGIFYISSKAGTYTVVLKEGYKRGSVVESNPLMNIRNKYLHLMNTVEE 373

Query: 613 DSKTTNEHGGTRQQKQEQKEGSDDRSGKQNEAELLNSSD--DEDENTRSHHNVHADRKDN 672
           DSKTT +H  TRQQKQEQKE S+   G+QNEAELLNSSD  DEDENT SH NV AD++DN
Sbjct: 374 DSKTTTKHIDTRQQKQEQKEESNHAPGEQNEAELLNSSDDEDEDENTSSHRNVCADQRDN 433

Query: 673 -GGKRHVDFKENAARNRARSSMRMNKTAER 700
             G R  + + +  R   R   R N   ER
Sbjct: 434 IRGDRRGNVRCD-RRGNVRGDRRDNVRGER 461

[Close]

BLAST of Cla005517 vs. NCBI nr
Match: gi|659092602|ref|XP_008447139.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 744.6 bits (1921), Expect = 1.6e-211
Identity = 380/479 (79.33%), Postives = 414/479 (86.43%), Query Frame = 1


Query: 253 KSQQQHHIFQIHLRTYVDGTIQWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPVS 312
           ++QQQ HI QIHLRTYVDGTI WVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPVS
Sbjct: 14  RTQQQLHISQIHLRTYVDGTINWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPVS 73

Query: 313 IITQKKEVLRIPTRPIELIRKYPSIFEEFLPGGIGIQPHVRLTSKVLELDAEEQLTYQSE 372
           IITQK+E+LRIP RPI+LIRKYPSIFEEFLPGGIG+QPHV+LTSKVLELDAEEQLTYQ+ 
Sbjct: 74  IITQKREILRIPMRPIDLIRKYPSIFEEFLPGGIGVQPHVKLTSKVLELDAEEQLTYQTS 133

Query: 373 TCRQEAAERLVRLLMLSRVHKIPVTIIDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNF 432
           TCRQ+AA+RL++LLMLSRVHK+PV+IIDQLKWDLGLPKD+VQSIVP+FPDYFKVVG QNF
Sbjct: 134 TCRQQAADRLLKLLMLSRVHKVPVSIIDQLKWDLGLPKDFVQSIVPEFPDYFKVVGRQNF 193

Query: 433 ASGSGDMRALELVCWNNELATSVLQKMAAKVKPDTSKGMHNITFPMKFSNGFVMDKKFKK 492
           ASGSGDMR LELVCWNNELATSVL+KMAAKVK DTSK M +ITFPMK+SNGF MDKKFKK
Sbjct: 194 ASGSGDMRVLELVCWNNELATSVLEKMAAKVKHDTSKRM-DITFPMKYSNGFEMDKKFKK 253

Query: 493 WVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGEYFG 552
           WVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGEYFG
Sbjct: 254 WVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGEYFG 313

Query: 553 LRSRFKRALLHHPGIFYVSSKAGTYTVVLKEGYKRGSVIESSPLMNTRNKYLHLMNTVKE 612
           LRSRFKRALLHHPGIFY+SSKAGTYTVVLKEGYKRGSV+ES+PLMN RNKYLHLMNTV+E
Sbjct: 314 LRSRFKRALLHHPGIFYISSKAGTYTVVLKEGYKRGSVVESNPLMNIRNKYLHLMNTVEE 373

Query: 613 DSKTTNEHGGTRQ----QKQEQKEGSDDRSGKQNEAELLNSSD------DEDENTRSHHN 672
           DSKTT +H  TRQ    QKQEQKEGSDD  G QNEAELLNSSD      DEDENT S H 
Sbjct: 374 DSKTTTKHISTRQQKQEQKQEQKEGSDDAFGVQNEAELLNSSDDEDEDEDEDENTSSPHT 433

Query: 673 VHADRKDNGGKRHVDFKENAARNRARSSMRMNKTAERPSRDVKIERSRLSMNKRYPVRS 722
           V AD +DN      D ++N      R+  R +  A+R        R  +  ++R  VR+
Sbjct: 434 VRADPRDN---VRADLRDN-----VRADRRDHVCADRRDHVRADRRDHVRADRRDQVRA 483

[Close]

BLAST of Cla005517 vs. NCBI nr
Match: gi|659092602|ref|XP_008447139.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 53.5 bits (127), Expect = 1.8e-03
Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = 1


Query: 652 DEDENTRSHHNVH--ADRKDNGGKRHVDFKENAARNRARSSMRMNKTAERPSRDVKIERS 711
           D  E+ R+    H  ADR+DN  +RH + KENA R+R     RMN  AERP RDV   R 
Sbjct: 524 DRREHVRADRRDHVRADRRDNVSERHFNLKENATRSRVTLPKRMN--AERP-RDV--TRE 583

Query: 712 RLSMNKRYPVRSKV 724
           R  M+KR+ VR++V
Sbjct: 584 RTGMSKRHSVRTEV 592

HSP 2 Score: 744.6 bits (1921), Expect = 1.6e-211
Identity = 380/479 (79.33%), Postives = 415/479 (86.64%), Query Frame = 1


Query: 253 KSQQQHHIFQIHLRTYVDGTIQWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPVS 312
           ++QQQ HI QIHLRTYVDGTI WVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPVS
Sbjct: 14  RTQQQLHISQIHLRTYVDGTINWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPVS 73

Query: 313 IITQKKEVLRIPTRPIELIRKYPSIFEEFLPGGIGIQPHVRLTSKVLELDAEEQLTYQSE 372
           IITQK+E+LRIP RPI+LIRKYPSIFEEFLPGGIG+QPHV+LTSKVLELDAEEQLTYQ+ 
Sbjct: 74  IITQKREILRIPMRPIDLIRKYPSIFEEFLPGGIGVQPHVKLTSKVLELDAEEQLTYQTS 133

Query: 373 TCRQEAAERLVRLLMLSRVHKIPVTIIDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNF 432
           TCRQ+AA+RL++LLMLSRVHK+PV+IIDQLKWDLGLPKD+VQSIVP+FPDYFKVVG QNF
Sbjct: 134 TCRQQAADRLLKLLMLSRVHKVPVSIIDQLKWDLGLPKDFVQSIVPEFPDYFKVVGRQNF 193

Query: 433 ASGSGDMRALELVCWNNELATSVLQKMAAKVKPDTSKGMHNITFPMKFSNGFVMDKKFKK 492
           ASGSGDMR LELVCWNNELATSVL+KMAAKVK DTSK M +ITFPMK+SNGF MDKKFKK
Sbjct: 194 ASGSGDMRVLELVCWNNELATSVLEKMAAKVKHDTSKRM-DITFPMKYSNGFEMDKKFKK 253

Query: 493 WVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGEYFG 552
           WVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGEYFG
Sbjct: 254 WVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGEYFG 313

Query: 553 LRSRFKRALLHHPGIFYVSSKAGTYTVVLKEGYKRGSVIESSPLMNTRNKYLHLMNTVKE 612
           LRSRFKRALLHHPGIFY+SSKAGTYTVVLKEGYKRGSV+ES+PLMN RNKYLHLMNTV+E
Sbjct: 314 LRSRFKRALLHHPGIFYISSKAGTYTVVLKEGYKRGSVVESNPLMNIRNKYLHLMNTVEE 373

Query: 613 DSKTTNEHGGTRQ----QKQEQKEGSDDRSGKQNEAELLNSSD------DEDENTRSHHN 672
           DSKTT +H  TRQ    QKQEQKEGSDD  G QNEAELLNSSD      DEDENT S H 
Sbjct: 374 DSKTTTKHISTRQQKQEQKQEQKEGSDDAFGVQNEAELLNSSDDEDEDEDEDENTSSPHT 433

Query: 673 VHADRKDNGGKRHVDFKENAARNRARSSMRMNKTAERPSRDVKIERSRLSMNKRYPVRS 722
           V AD +DN      D ++N      R+  R +  A+R  +     R  +  ++R  VR+
Sbjct: 434 VRADPRDN---VRADLRDN-----VRADRRDHVCADRGDQVRADRRDHVRADRRDHVRA 483

[Close]

BLAST of Cla005517 vs. NCBI nr
Match: gi|659092598|ref|XP_008447137.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 53.5 bits (127), Expect = 1.8e-03
Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = 1


Query: 652 DEDENTRSHHNVH--ADRKDNGGKRHVDFKENAARNRARSSMRMNKTAERPSRDVKIERS 711
           D  E+ R+    H  ADR+DN  +RH + KENA R+R     RMN  AERP RDV   R 
Sbjct: 532 DRREHVRADRRDHVRADRRDNVSERHFNLKENATRSRVTLPKRMN--AERP-RDV--TRE 591

Query: 712 RLSMNKRYPVRSKV 724
           R  M+KR+ VR++V
Sbjct: 592 RTGMSKRHSVRTEV 600

HSP 2 Score: 539.7 bits (1389), Expect = 8.1e-150
Identity = 280/491 (57.03%), Postives = 353/491 (71.89%), Query Frame = 1


Query: 254 SQQQHHIFQIHLRTYVDGTIQWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPVSI 313
           SQ  HH    H   +VD T +WVRDRGLDHAVEREKNL P++NIK+FIKSEPSKS+P+SI
Sbjct: 16  SQSSHHSHSRHRTFFVDATTKWVRDRGLDHAVEREKNLRPMVNIKNFIKSEPSKSLPISI 75

Query: 314 ITQKKEVLRIPTRPIELIRKYPSIFEEFLPGGIGIQPHVRLTSKVLELDAEEQLTYQSET 373
           I Q +E L IPTRPI+ IRKYPSIFEEFLPGG  IQPHVRLT +VL+LDAEE+L YQSE+
Sbjct: 76  IAQNRESLMIPTRPIDFIRKYPSIFEEFLPGGGAIQPHVRLTGQVLDLDAEEELMYQSES 135

Query: 374 CRQEAAERLVRLLMLSRVHKIPVTIIDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFA 433
            RQ+ A+RL++LLML R +K+P+ +I++LKWDLGLP DY +S+V ++PDYF +V  +N A
Sbjct: 136 YRQDVADRLLKLLMLVRTNKLPLNVIERLKWDLGLPHDYQKSLVHEYPDYFNIVVGKNSA 195

Query: 434 SGSGDMRALELVCWNNELATSVLQK-MAAKVK------------PDTSKGMHNITFPMKF 493
           SG  D+R LELVCW NE+ATSV +K  AAK K               SK   +  FPM+F
Sbjct: 196 SGWKDLRDLELVCWRNEMATSVFEKHAAAKEKKASAKKKRALSGDSPSKEEEHCVFPMQF 255

Query: 494 SNGFVMDKKFKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTE 553
           S GF MDKK KKW+DEWQKLPY+SPYENA+HLS  SDESDKW VAILHELLH+LV KKT+
Sbjct: 256 SRGFEMDKKLKKWIDEWQKLPYVSPYENAAHLSSKSDESDKWVVAILHELLHILVPKKTD 315

Query: 554 KENILCIGEYFGLRSRFKRALLHHPGIFYVSSKAGTYTVVLKEGYKRGSVIESSPLMNTR 613
           +EN+LC+GEY GLRSRFK+ALLHHPGIFY+S+K GTYTVVL+EGYKRG++IE+  LMN R
Sbjct: 316 RENLLCLGEYLGLRSRFKQALLHHPGIFYLSNKIGTYTVVLREGYKRGTIIENHQLMNMR 375

Query: 614 NKYLHLMNTVKEDSKTTNEHGGTRQQKQ--------EQKEGSDDRSGKQNEAELLNSSD- 673
           ++Y+HLMNTVKEDSK  +   G+ Q+K+        + +E  DD S ++ E EL NSSD 
Sbjct: 376 SQYIHLMNTVKEDSKMVSVPSGSTQEKKAVVDVPKGKGEEEEDDESEEEWEGELRNSSDT 435

Query: 674 --------DEDENTRSHHNVHADRKDNGGKR----HVDFK---ENAARNRA--RSSMRMN 706
                   DE++  +S  ++     +N G+R    H D K    NA R  +  R +   +
Sbjct: 436 EFLYDDDSDEEDEDQSETSIEKHAINNKGRRGRKSHFDGKTPSRNAERGTSGGRKARNSD 495

The following BLAST results are available for this feature:

BLAST of Cla005517 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP200_ARATH	9.5e-50	63.82	Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidop...	[more]
PPR65_ARATH	8.1e-33	46.62	Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana GN...	[more]
PP257_ARATH	4.0e-32	41.94	Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidop...	[more]
PP321_ARATH	5.8e-31	42.86	Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN...	[more]
PP295_ARATH	3.7e-30	45.45	Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN...	[more]

BLAST of Cla005517 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRP2_CUCSA	1.0e-215	84.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G420350 PE=4 SV=1	[more]
M5VK57_PRUPE	2.1e-149	56.82	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024610mg PE=4 SV=1	[more]
F6HYS7_VITVI	4.0e-140	56.33	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00460 PE=4 SV=...	[more]
A5BJQ8_VITVI	4.5e-139	56.11	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018330 PE=4 SV=1	[more]
A0A0D2RS78_GOSRA	7.1e-137	55.06	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G024300 PE=4 SV=1	[more]

BLAST of Cla005517 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778702601\|ref\|XP_004151592.2\|	5.0e-216	81.14	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis sativus]	[more]
gi\|778702604\|ref\|XP_011655231.1\|	1.4e-215	84.22	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X2 [Cucumis sativus]	[more]
gi\|659092602\|ref\|XP_008447139.1\|	1.6e-211	79.33	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like isoform X2 [Cucumis melo]	[more]
gi\|659092602\|ref\|XP_008447139.1\|	1.8e-03	47.30	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like isoform X2 [Cucumis melo]	[more]
gi\|659092598\|ref\|XP_008447137.1\|	1.8e-03	47.30	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR021099	PORR_domain

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla005517	Cla005517	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla005517	Cla005517.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla005517.1.cds1	Cla005517.1.cds1	CDS
Cla005517.1.cds2	Cla005517.1.cds2	CDS
Cla005517.1.cds3	Cla005517.1.cds3	CDS
Cla005517.1.cds4	Cla005517.1.cds4	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 109..137 score: 0.024coord: 6..31 score: 4.
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 39..80 score: 1.8
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 40..70 score: 1.5E-8coord: 6..31 score: 1.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 105..139 score: 9.251coord: 4..34 score: 10.194coord: 70..104 score: 6.84coord: 35..69 score: 12
IPR021099	Plant organelle RNA recognition domain	PFAM	PF11955	PORR	coord: 276..611 score: 3.5E
None	No IPR available	PANTHER	PTHR31476	FAMILY NOT NAMED	coord: 262..704 score: 3.9E
None	No IPR available	PANTHER	PTHR31476:SF16	F14O23.23 PROTEIN	coord: 262..704 score: 3.9E