Cla005392.1 (mRNA) Watermelon (97103) v1

Overview
NameCla005392
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr7 : 27497739 .. 27498029 (-)
Sequence length291
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCAGAGAAGCGAACAGAGCGTTCGACCGGACACACGAGGTTCTCGAAGAAGCGAACGAACAGACCGACAAGATACTCGAGAAAGTGGAATCAAGGACGGCGGGATGGCCATCTTGGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTGCTGTCCTTGGTTTAAGTAGTGATCAAGGAGGAGAAGATATCGATGGTGGCTATGTCGATACTCGTGTCGATGGTACTGATGCCGATGGCGTCTACGGTGGTGGTGGTGGCGGCTGTGGGAATCGCTGCCAAAACTGA

mRNA sequence

ATGTCTCAGAGAAGCGAACAGAGCGTTCGACCGGACACACGAGGTTCTCGAAGAAGCGAACGAACAGACCGACAAGATACTCGAGAAAGTGGAATCAAGGACGGCGGGATGGCCATCTTGGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTGCTGTCCTTGGTTTAAGTAGTGATCAAGGAGGAGAAGATATCGATGGTGGCTATGTCGATACTCGTGTCGATGGTACTGATGCCGATGGCGTCTACGGTGGTGGTGGTGGCGGCTGTGGGAATCGCTGCCAAAACTGA

Coding sequence (CDS)

ATGTCTCAGAGAAGCGAACAGAGCGTTCGACCGGACACACGAGGTTCTCGAAGAAGCGAACGAACAGACCGACAAGATACTCGAGAAAGTGGAATCAAGGACGGCGGGATGGCCATCTTGGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTGCTGTCCTTGGTTTAAGTAGTGATCAAGGAGGAGAAGATATCGATGGTGGCTATGTCGATACTCGTGTCGATGGTACTGATGCCGATGGCGTCTACGGTGGTGGTGGTGGCGGCTGTGGGAATCGCTGCCAAAACTGA

Protein sequence

MSQRSEQSVRPDTRGSRRSERTDRQDTRESGIKDGGMAILAGAGAAIATAAAVLGLSSDQGGEDIDGGYVDTRVDGTDADGVYGGGGGGCGNRCQN
Homology
[Close]
BLAST of Cla005392 vs. TrEMBL
Match: A0A0A0L0B2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G081290 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.1e-28
Identity = 68/87 (78.16%), Postives = 74/87 (85.06%), Query Frame = 1 

Query: 2   SQRSEQSVRPDTRGSRRSERTDRQDTRESGIKDGGMAILAGAGAAIATAAAVLGLSSDQG 61
           S+R+E+S+ PDT+ SRRSE+ DRQDTRES IKDGGMAILAGAGAAIATAA VLGLSS QG
Sbjct: 118 SRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQG 177

Query: 62  GEDIDGGYVDTRVDGTDADGVYGGGGG 89
           GEDIDG YVD   DGTD  GVYGGG G
Sbjct: 178 GEDIDGDYVDNCDDGTDGGGVYGGGVG 204

[Close]
BLAST of Cla005392 vs. TrEMBL
Match: A0A0A0L0B2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G081290 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.6e-26
Identity = 70/100 (70.00%), Postives = 73/100 (73.00%), Query Frame = 1 

Query: 3   QRSEQSVRPDTRGSRRSERT--------------DRQDTRESGIKDGGMAILAGAGAAIA 62
           Q SEQS+ PDTR SRR+ER+              DRQDTRES IKDGGMAILAGAGAAIA
Sbjct: 105 QTSEQSIFPDTRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIA 164

Query: 63  TAAAVLGLSSDQGGEDIDGGYVDTRVDGTDADGVYGGGGG 89
           TAA VLGLSS QGGEDIDG YVD   DGTD  GVYGGG G
Sbjct: 165 TAATVLGLSSYQGGEDIDGDYVDNCDDGTDGGGVYGGGVG 204


HSP 2 Score: 120.6 bits (301), Expect = 1.1e-24
Identity = 70/115 (60.87%), Postives = 73/115 (63.48%), Query Frame = 1 

Query: 2   SQRSEQ----------------------------SVRPDTRGSRRSERTDRQDTRESGIK 61
           SQR EQ                            S+ PDT+ SRRSE+ DRQDTRES IK
Sbjct: 90  SQRGEQSIFTDARGFQTSEQSIFPDTRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIK 149

Query: 62  DGGMAILAGAGAAIATAAAVLGLSSDQGGEDIDGGYVDTRVDGTDADGVYGGGGG 89
           DGGMAILAGAGAAIATAA VLGLSS QGGEDIDG YVD   DGTD  GVYGGG G
Sbjct: 150 DGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGDYVDNCDDGTDGGGVYGGGVG 204

[Close]
BLAST of Cla005392 vs. NCBI nr
Match: gi|700198393|gb|KGN53551.1| (hypothetical protein Csa_4G081290 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 3.0e-28
Identity = 68/87 (78.16%), Postives = 74/87 (85.06%), Query Frame = 1 

Query: 2   SQRSEQSVRPDTRGSRRSERTDRQDTRESGIKDGGMAILAGAGAAIATAAAVLGLSSDQG 61
           S+R+E+S+ PDT+ SRRSE+ DRQDTRES IKDGGMAILAGAGAAIATAA VLGLSS QG
Sbjct: 118 SRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQG 177

Query: 62  GEDIDGGYVDTRVDGTDADGVYGGGGG 89
           GEDIDG YVD   DGTD  GVYGGG G
Sbjct: 178 GEDIDGDYVDNCDDGTDGGGVYGGGVG 204

[Close]
BLAST of Cla005392 vs. NCBI nr
Match: gi|700198393|gb|KGN53551.1| (hypothetical protein Csa_4G081290 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 3.7e-26
Identity = 70/100 (70.00%), Postives = 73/100 (73.00%), Query Frame = 1 

Query: 3   QRSEQSVRPDTRGSRRSERT--------------DRQDTRESGIKDGGMAILAGAGAAIA 62
           Q SEQS+ PDTR SRR+ER+              DRQDTRES IKDGGMAILAGAGAAIA
Sbjct: 105 QTSEQSIFPDTRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIA 164

Query: 63  TAAAVLGLSSDQGGEDIDGGYVDTRVDGTDADGVYGGGGG 89
           TAA VLGLSS QGGEDIDG YVD   DGTD  GVYGGG G
Sbjct: 165 TAATVLGLSSYQGGEDIDGDYVDNCDDGTDGGGVYGGGVG 204


HSP 2 Score: 120.6 bits (301), Expect = 1.5e-24
Identity = 70/115 (60.87%), Postives = 73/115 (63.48%), Query Frame = 1 

Query: 2   SQRSEQ----------------------------SVRPDTRGSRRSERTDRQDTRESGIK 61
           SQR EQ                            S+ PDT+ SRRSE+ DRQDTRES IK
Sbjct: 90  SQRGEQSIFTDARGFQTSEQSIFPDTRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIK 149

Query: 62  DGGMAILAGAGAAIATAAAVLGLSSDQGGEDIDGGYVDTRVDGTDADGVYGGGGG 89
           DGGMAILAGAGAAIATAA VLGLSS QGGEDIDG YVD   DGTD  GVYGGG G
Sbjct: 150 DGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGDYVDNCDDGTDGGGVYGGGVG 204

The following BLAST results are available for this feature:
BLAST of Cla005392 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0B2_CUCSA2.1e-2878.16Uncharacterized protein OS=Cucumis sativus GN=Csa_4G081290 PE=4 SV=1[more]
A0A0A0L0B2_CUCSA2.6e-2670.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G081290 PE=4 SV=1[more]
BLAST of Cla005392 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198393|gb|KGN53551.1|3.0e-2878.16hypothetical protein Csa_4G081290 [Cucumis sativus][more]
gi|700198393|gb|KGN53551.1|3.7e-2670.00hypothetical protein Csa_4G081290 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla005392Cla005392gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla005392Cla005392.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla005392.1.cds1Cla005392.1.cds1CDS