Cla004091.1 (mRNA) Watermelon (97103) v1

Overview
NameCla004091
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGag/pol protein (Fragment) (AHRD V1 ***- E2GK51_BRYDI)
LocationChr6 : 12435093 .. 12435497 (+)
Sequence length405
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGATCTAAGGTTTGTTTTAACCGAAGAATTTCCTCTAGCTCTCGGCTCAAATGCAAACCGAAGTGTTTGGGATGCATATGATAGATGGATTAGGACTAACGATAAAGCCCGAGTCAATATCTTGGCAAGCATATTTGATTTGTTGTCCAAGAAGCATGAGAACATGATGACCGCTAAGGAAATCATGGACTCACTGCAGACGATGTTTGGACAACTTTCCTCATCAGTTCAACATGAAGAAAATCACAAAACTGCCAAAAACAAGGCAGCGCTGTGGCGCTTTTTCCTGAGAGTAGCATCCAACCTCAGCGCAGCAGCACCGACGCAGCGTTGCGACACGATGCCGAGGATAGGCTTTTATGACGCACAGCGCCCCGGCGGCGCCACCCATCTTTCCTAA

mRNA sequence

ATGGATGATCTAAGGTTTGTTTTAACCGAAGAATTTCCTCTAGCTCTCGGCTCAAATGCAAACCGAAGTGTTTGGGATGCATATGATAGATGGATTAGGACTAACGATAAAGCCCGAGTCAATATCTTGGCAAGCATATTTGATTTGTTGTCCAAGAAGCATGAGAACATGATGACCGCTAAGGAAATCATGGACTCACTGCAGACGATGTTTGGACAACTTTCCTCATCAGTTCAACATGAAGAAAATCACAAAACTGCCAAAAACAAGGCAGCGCTGTGGCGCTTTTTCCTGAGAGTAGCATCCAACCTCAGCGCAGCAGCACCGACGCAGCGTTGCGACACGATGCCGAGGATAGGCTTTTATGACGCACAGCGCCCCGGCGGCGCCACCCATCTTTCCTAA

Coding sequence (CDS)

ATGGATGATCTAAGGTTTGTTTTAACCGAAGAATTTCCTCTAGCTCTCGGCTCAAATGCAAACCGAAGTGTTTGGGATGCATATGATAGATGGATTAGGACTAACGATAAAGCCCGAGTCAATATCTTGGCAAGCATATTTGATTTGTTGTCCAAGAAGCATGAGAACATGATGACCGCTAAGGAAATCATGGACTCACTGCAGACGATGTTTGGACAACTTTCCTCATCAGTTCAACATGAAGAAAATCACAAAACTGCCAAAAACAAGGCAGCGCTGTGGCGCTTTTTCCTGAGAGTAGCATCCAACCTCAGCGCAGCAGCACCGACGCAGCGTTGCGACACGATGCCGAGGATAGGCTTTTATGACGCACAGCGCCCCGGCGGCGCCACCCATCTTTCCTAA

Protein sequence

MDDLRFVLTEEFPLALGSNANRSVWDAYDRWIRTNDKARVNILASIFDLLSKKHENMMTAKEIMDSLQTMFGQLSSSVQHEENHKTAKNKAALWRFFLRVASNLSAAAPTQRCDTMPRIGFYDAQRPGGATHLS
Homology
[Close]
BLAST of Cla004091 vs. TrEMBL
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-20
Identity = 53/81 (65.43%), Postives = 67/81 (82.72%), Query Frame = 1 

Query: 1   MDDLRFVLTEEFPLALGSNANRSVWDAYDRWIRTNDKARVNILASIFDLLSKKHENMMTA 60
           +DDLRFVLTEE P A   NANR+V +AYDRW++ NDKARV ILAS+ D+L+KKH+++ TA
Sbjct: 32  VDDLRFVLTEECPQAPALNANRTVREAYDRWVKANDKARVYILASMTDVLAKKHDSIATA 91

Query: 61  KEIMDSLQTMFGQLSSSVQHE 82
           K IMDSL+ MFGQ S S++HE
Sbjct: 92  KGIMDSLREMFGQPSWSLRHE 112

[Close]
BLAST of Cla004091 vs. TrEMBL
Match: E2GK52_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.7e-15
Identity = 46/81 (56.79%), Postives = 62/81 (76.54%), Query Frame = 1 

Query: 1   MDDLRFVLTEEFPLALGSNANRSVWDAYDRWIRTNDKARVNILASIFDLLSKKHENMMTA 60
           ++DLRF+LTEE   A   NANR+V +AYDRW + NDKA V ILAS+ D+L+KK++++ T 
Sbjct: 32  VEDLRFILTEECHQAPALNANRTVREAYDRWGKANDKACVYILASMTDVLAKKYDSIATT 91

Query: 61  KEIMDSLQTMFGQLSSSVQHE 82
           K IMDS + MFGQ S S++HE
Sbjct: 92  KGIMDSFREMFGQPSWSLRHE 112

[Close]
BLAST of Cla004091 vs. TrEMBL
Match: W9SH28_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-11
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1 

Query: 2   DDLRFVLTEEFPLALGSNANRSVWDAYDRWIRTNDKARVNILASIFDLLSKKHENMMTAK 61
           +D +FVL +E P    +NA ++  + YDRWI+ N+KA+  +LAS+ D+L KKHE M TA 
Sbjct: 33  EDYKFVLVDECPPEPAANATKTAREPYDRWIKANNKAKCFMLASMSDVLCKKHEEMETAY 92

Query: 62  EIMDSLQTMFGQLSSSVQ 80
           EIM+SL+ MFG  S   +
Sbjct: 93  EIMESLEAMFGAPSEKAR 110

[Close]
BLAST of Cla004091 vs. TrEMBL
Match: W9RV37_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006900 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-11
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 1 

Query: 2  DDLRFVLTEEFPLALGSNANRSVWDAYDRWIRTNDKARVNILASIFDLLSKKHENMMTAK 61
          +D +FVL EE P     NA ++  + YDRWI+ N+KA+  +LAS+ D+L KKHE M TA 
Sbjct: 8  EDYKFVLVEECPPEPAVNATKTAREPYDRWIKANNKAKCFMLASMSDVLRKKHEEMETAY 67

Query: 62 EIMDSLQTMFGQLSSSVQ 80
          EIM+SL+ MFG  S   +
Sbjct: 68 EIMESLEAMFGPPSEKAR 85

[Close]
BLAST of Cla004091 vs. TrEMBL
Match: W9RXH5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001554 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-11
Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = 1 

Query: 2   DDLRFVLTEEFPLALGSNANRSVWDAYDRWIRTNDKARVNILASIFDLLSKKHENMMTAK 61
           +D +F+L EE PL    NA+++  + YDRWI+ N+KA+  +LAS+ D+L KKH  M TA 
Sbjct: 33  EDYKFLLAEECPLEPADNASKTAREPYDRWIKANNKAKCFMLASMSDVLRKKHGEMETAY 92

Query: 62  EIMDSLQTMFG 73
           EIM+SL+ MFG
Sbjct: 93  EIMESLEAMFG 103

[Close]
BLAST of Cla004091 vs. NCBI nr
Match: gi|299474487|gb|ADJ18449.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 107.1 bits (266), Expect = 2.5e-20
Identity = 53/81 (65.43%), Postives = 67/81 (82.72%), Query Frame = 1 

Query: 1   MDDLRFVLTEEFPLALGSNANRSVWDAYDRWIRTNDKARVNILASIFDLLSKKHENMMTA 60
           +DDLRFVLTEE P A   NANR+V +AYDRW++ NDKARV ILAS+ D+L+KKH+++ TA
Sbjct: 32  VDDLRFVLTEECPQAPALNANRTVREAYDRWVKANDKARVYILASMTDVLAKKHDSIATA 91

Query: 61  KEIMDSLQTMFGQLSSSVQHE 82
           K IMDSL+ MFGQ S S++HE
Sbjct: 92  KGIMDSLREMFGQPSWSLRHE 112

[Close]
BLAST of Cla004091 vs. NCBI nr
Match: gi|778697615|ref|XP_011654359.1| (PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 7.2e-20
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = 1 

Query: 1   MDDLRFVLTEEFPLALGSNANRSVWDAYDRWIRTNDKARVNILASIFDLLSKKHENMMTA 60
           +DDLRFVLTEE P    SNANR+  +AYDRWI+ N+KARV ILAS+ D+L+KKHE++ TA
Sbjct: 32  VDDLRFVLTEECPQNPASNANRTGREAYDRWIKANEKARVYILASMSDVLAKKHESLATA 91

Query: 61  KEIMDSLQTMFGQLSSSVQHE 82
           KEIMDSL+ MFGQ   S++HE
Sbjct: 92  KEIMDSLRGMFGQPEWSLRHE 112

[Close]
BLAST of Cla004091 vs. NCBI nr
Match: gi|659086056|ref|XP_008443743.1| (PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 3.0e-18
Identity = 50/81 (61.73%), Postives = 65/81 (80.25%), Query Frame = 1 

Query: 1   MDDLRFVLTEEFPLALGSNANRSVWDAYDRWIRTNDKARVNILASIFDLLSKKHENMMTA 60
           +DDLRFVLTEE P    SNA+++   AYDRWI+ N+KARV ILAS+ D+L+KKHE++ TA
Sbjct: 32  VDDLRFVLTEECPQTPSSNASQTSRKAYDRWIKANEKARVYILASMSDVLAKKHESLATA 91

Query: 61  KEIMDSLQTMFGQLSSSVQHE 82
           KEIM+SL+ MFGQ   S++HE
Sbjct: 92  KEIMNSLKGMFGQPKWSLRHE 112

[Close]
BLAST of Cla004091 vs. NCBI nr
Match: gi|659090028|ref|XP_008445796.1| (PREDICTED: uncharacterized protein LOC103488720 [Cucumis melo])

HSP 1 Score: 99.4 bits (246), Expect = 5.2e-18
Identity = 48/81 (59.26%), Postives = 65/81 (80.25%), Query Frame = 1 

Query: 1  MDDLRFVLTEEFPLALGSNANRSVWDAYDRWIRTNDKARVNILASIFDLLSKKHENMMTA 60
          +DDLRFVL+E+ P A  SNANR+  + YD+WI+ N+KARV ILAS++D+L KKHE++ TA
Sbjct: 5  VDDLRFVLSEKCPQAPTSNANRTSQEVYDQWIKANEKARVYILASMYDVLVKKHESLATA 64

Query: 61 KEIMDSLQTMFGQLSSSVQHE 82
           EIMDSL+ MFG+   S++HE
Sbjct: 65 TEIMDSLREMFGKKEWSLRHE 85

[Close]
BLAST of Cla004091 vs. NCBI nr
Match: gi|659113933|ref|XP_008456826.1| (PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 3.3e-17
Identity = 44/81 (54.32%), Postives = 64/81 (79.01%), Query Frame = 1 

Query: 1   MDDLRFVLTEEFPLALGSNANRSVWDAYDRWIRTNDKARVNILASIFDLLSKKHENMMTA 60
           +DDLRFVL E+ P    +NA R+V +AY+RW + N+KAR  +LAS+ ++L+KK+E+M+TA
Sbjct: 32  IDDLRFVLVEKCPQVSAANATRTVREAYERWAKANEKARAYLLASLSEVLAKKNESMLTA 91

Query: 61  KEIMDSLQTMFGQLSSSVQHE 82
           +EIMDSLQ MFGQ S  ++H+
Sbjct: 92  REIMDSLQEMFGQASYQIKHD 112

The following BLAST results are available for this feature:
BLAST of Cla004091 vs. TrEMBL
Match NameE-valueIdentityDescription
E2GK51_BRYDI1.7e-2065.43Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
E2GK52_BRYDI1.7e-1556.79Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
W9SH28_9ROSA1.9e-1147.44Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1[more]
W9RV37_9ROSA1.9e-1148.72Uncharacterized protein OS=Morus notabilis GN=L484_006900 PE=4 SV=1[more]
W9RXH5_9ROSA2.5e-1150.70Uncharacterized protein OS=Morus notabilis GN=L484_001554 PE=4 SV=1[more]
BLAST of Cla004091 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|299474487|gb|ADJ18449.1|2.5e-2065.43gag/pol protein [Bryonia dioica][more]
gi|778697615|ref|XP_011654359.1|7.2e-2065.43PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus][more]
gi|659086056|ref|XP_008443743.1|3.0e-1861.73PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo][more]
gi|659090028|ref|XP_008445796.1|5.2e-1859.26PREDICTED: uncharacterized protein LOC103488720 [Cucumis melo][more]
gi|659113933|ref|XP_008456826.1|3.3e-1754.32PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla004091Cla004091gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla004091Cla004091.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla004091.1.cds1Cla004091.1.cds1CDS