Cla003023.1 (mRNA) Watermelon (97103) v1

Overview
NameCla003023
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionTy3-gypsy retrotransposon protein (AHRD V1 ***- E5GBB0_CUCME)
LocationChr4 : 6856627 .. 6857079 (-)
Sequence length453
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCTAAAGACAATGCTCCTAACGCTTCAAGTGACACTTCCAGAAGACCGATTACCCGTAGTCGCTCTAAGGAAATACAATTGGAAGAGCAACCTACCTTTGAGATCACGAGAAATATATGGGAGCAGATCTCAAGAGACCCGAAAGCTGGGGTCATCATCAAAGAGAATCCTACACTTGACAAGCATACCTCAGCTTTTAAACGATCAAGCGAGGAGGCATCCCAACCAAATGTAATGTCAATCATGATGGTTGATGTGGGAACAAGTGAGGAGAGAATGGCTGAGCTTGAAAAGAAGGTTAGCATGCTATTGAAGGTAGTTGAAAAAAGGGATTATGAGATTGCATCCCTGAAGAACCATATTGAAAGTCGTGACGCAGCTGAATCGAGTCATACACTCGCAGTCAAGAGCAATGACAAAGGGAAGAAGGTTTTGCAATACAGTTAG

mRNA sequence

ATGGCATCTAAAGACAATGCTCCTAACGCTTCAAGTGACACTTCCAGAAGACCGATTACCCGTAGTCGCTCTAAGGAAATACAATTGGAAGAGCAACCTACCTTTGAGATCACGAGAAATATATGGGAGCAGATCTCAAGAGACCCGAAAGCTGGGGTCATCATCAAAGAGAATCCTACACTTGACAAGCATACCTCAGCTTTTAAACGATCAAGCGAGGAGGCATCCCAACCAAATGTAATGTCAATCATGATGGTTGATGTGGGAACAAGTGAGGAGAGAATGGCTGAGCTTGAAAAGAAGGTTAGCATGCTATTGAAGGTAGTTGAAAAAAGGGATTATGAGATTGCATCCCTGAAGAACCATATTGAAAGTCGTGACGCAGCTGAATCGAGTCATACACTCGCAGTCAAGAGCAATGACAAAGGGAAGAAGGTTTTGCAATACAGTTAG

Coding sequence (CDS)

ATGGCATCTAAAGACAATGCTCCTAACGCTTCAAGTGACACTTCCAGAAGACCGATTACCCGTAGTCGCTCTAAGGAAATACAATTGGAAGAGCAACCTACCTTTGAGATCACGAGAAATATATGGGAGCAGATCTCAAGAGACCCGAAAGCTGGGGTCATCATCAAAGAGAATCCTACACTTGACAAGCATACCTCAGCTTTTAAACGATCAAGCGAGGAGGCATCCCAACCAAATGTAATGTCAATCATGATGGTTGATGTGGGAACAAGTGAGGAGAGAATGGCTGAGCTTGAAAAGAAGGTTAGCATGCTATTGAAGGTAGTTGAAAAAAGGGATTATGAGATTGCATCCCTGAAGAACCATATTGAAAGTCGTGACGCAGCTGAATCGAGTCATACACTCGCAGTCAAGAGCAATGACAAAGGGAAGAAGGTTTTGCAATACAGTTAG

Protein sequence

MASKDNAPNASSDTSRRPITRSRSKEIQLEEQPTFEITRNIWEQISRDPKAGVIIKENPTLDKHTSAFKRSSEEASQPNVMSIMMVDVGTSEERMAELEKKVSMLLKVVEKRDYEIASLKNHIESRDAAESSHTLAVKSNDKGKKVLQYS
Homology
[Close]
BLAST of Cla003023 vs. TrEMBL
Match: E5GBB0_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.5e-38
Identity = 83/133 (62.41%), Postives = 103/133 (77.44%), Query Frame = 1 

Query: 1   MASKDNAPNASSDTSRRPITRSRSKEIQL-EEQPTFEITRNIWEQISRDPKAGVIIKENP 60
           M S+ N   A SD  +RP TRS S+EIQ  E+   FE+ +NIWEQIS+ PK G+IIKENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSCSREIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKENP 60

Query: 61  TLDKHTSAFKRSSEEASQPNVMSIMMVDVGTSEERMAELEKKVSMLLKVVEKRDYEIASL 120
            +DKH S  + S+EEA QPN+MS+M+ DV TSE RM ELEKKV+ML+K VE+RD++IASL
Sbjct: 61  AIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSEARMVELEKKVNMLMKAVEERDFKIASL 120

Query: 121 KNHIESRDAAESS 133
           KNHIESRD AES+
Sbjct: 121 KNHIESRDTAEST 133

[Close]
BLAST of Cla003023 vs. TrEMBL
Match: E5GCP6_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-18
Identity = 56/142 (39.44%), Postives = 93/142 (65.49%), Query Frame = 1 

Query: 9   NASSDTSRRPITRSRSKEI--QLEEQPTFEITRNIWEQISRDPKAGVIIKENPTLDKHTS 68
           + +SD+    +T+S  K    + E++  F + +   EQ+   PK G+II++NP  +  T 
Sbjct: 11  SVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIRDNPLFNNSTP 70

Query: 69  AFKRSSEEASQPNVMSIMMVDVGTSEERMAELEKKVSMLLKVVEKRDYEIASLKNHIESR 128
           A    S++AS   V+S+MMVDV T+E  + E+E+K++ L+KV+E+RD+EIA+LK+ +++ 
Sbjct: 71  A-SNLSDKASHLEVVSVMMVDV-TAEATVTEMERKINFLMKVIEERDHEIAALKDQMKAC 130

Query: 129 DAAESSHTLAVKSNDKGKKVLQ 149
           +  ESS T  VK+ DKGK V+Q
Sbjct: 131 ETGESSQTPVVKATDKGKNVVQ 150

[Close]
BLAST of Cla003023 vs. TrEMBL
Match: E5GB67_CUCME (Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-17
Identity = 52/117 (44.44%), Postives = 80/117 (68.38%), Query Frame = 1 

Query: 30  EEQPTFEITRNIWEQISRDPKAGVIIKENPTLDKHTSAFKRSSEEASQPNVMSIMMVDVG 89
           E++  F + +   EQ+    K G+II++NP  +  T     S +E S   V+S+MM+DV 
Sbjct: 3   EQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKE-SHLEVVSVMMIDV- 62

Query: 90  TSEERMAELEKKVSMLLKVVEKRDYEIASLKNHIESRDAAESSHTLAVKSNDKGKKV 147
           T+E  MAE+EKK++ L+KVVE+RD+EIA+LK+ +++ ++AESS T  VK+ DKGK V
Sbjct: 63  TAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVKTTDKGKNV 117

[Close]
BLAST of Cla003023 vs. TrEMBL
Match: E5GCM2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.7e-13
Identity = 47/108 (43.52%), Postives = 64/108 (59.26%), Query Frame = 1 

Query: 12  SDTSRRPITRSRSKEIQLEEQPTFEITRNIWEQISRDPKAGVIIKENPTLDKHTSAFKRS 71
           +DT  R I +S SK    +++    + +  WEQ+   PK G+IIKENP  +  T A    
Sbjct: 14  NDTYTRLIVQSHSKRSTQKQEQNSVLAKKSWEQLMESPKCGIIIKENPLFEDSTPA-SNL 73

Query: 72  SEEASQPNVMSIMMVDVGTSEERMAELEKKVSMLLKVVEKRDYEIASL 120
           SE+ S   V+SIMM DV T E  M E+E K++ L+KVVE+RDY I  L
Sbjct: 74  SEKESHLEVVSIMMADV-TVEAVMVEMEMKINFLMKVVEERDYGITVL 119

[Close]
BLAST of Cla003023 vs. TrEMBL
Match: E5GCE3_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.1e-11
Identity = 45/130 (34.62%), Postives = 76/130 (58.46%), Query Frame = 1 

Query: 1   MASKDNAPNASSDTSRRPITRSRSKEIQLEEQPTFEITRNIWEQISRDPKAGVIIKENPT 60
           +ASK    N   D+    +T+S SK    E++ +  + +  WEQ+   PK G+ I+ENP 
Sbjct: 6   VASKATVTN---DSYTGLVTQSHSKRSIQEQEQSSVLKKKSWEQLIESPKGGINIRENPL 65

Query: 61  LDKHTSAFKRSSEEASQPNVMSIMMVDVGTSEERMAELEKKVSMLLKVVEKRDYEIASLK 120
            +  T A   S +E S   V+S++M  V T+E  M E+E+K++ L+K V+ RD+EI +L+
Sbjct: 66  FNNSTPASNLSDKE-SHLEVVSVIMAAV-TAETTMVEMERKINFLMKAVKDRDHEITALE 125

Query: 121 NHIESRDAAE 131
           + +++   AE
Sbjct: 126 DQMKACVTAE 130

[Close]
BLAST of Cla003023 vs. NCBI nr
Match: gi|307135887|gb|ADN33752.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 166.0 bits (419), Expect = 5.0e-38
Identity = 83/133 (62.41%), Postives = 103/133 (77.44%), Query Frame = 1 

Query: 1   MASKDNAPNASSDTSRRPITRSRSKEIQL-EEQPTFEITRNIWEQISRDPKAGVIIKENP 60
           M S+ N   A SD  +RP TRS S+EIQ  E+   FE+ +NIWEQIS+ PK G+IIKENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSCSREIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKENP 60

Query: 61  TLDKHTSAFKRSSEEASQPNVMSIMMVDVGTSEERMAELEKKVSMLLKVVEKRDYEIASL 120
            +DKH S  + S+EEA QPN+MS+M+ DV TSE RM ELEKKV+ML+K VE+RD++IASL
Sbjct: 61  AIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSEARMVELEKKVNMLMKAVEERDFKIASL 120

Query: 121 KNHIESRDAAESS 133
           KNHIESRD AES+
Sbjct: 121 KNHIESRDTAEST 133

[Close]
BLAST of Cla003023 vs. NCBI nr
Match: gi|307136441|gb|ADN34247.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-18
Identity = 56/142 (39.44%), Postives = 93/142 (65.49%), Query Frame = 1 

Query: 9   NASSDTSRRPITRSRSKEI--QLEEQPTFEITRNIWEQISRDPKAGVIIKENPTLDKHTS 68
           + +SD+    +T+S  K    + E++  F + +   EQ+   PK G+II++NP  +  T 
Sbjct: 11  SVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIRDNPLFNNSTP 70

Query: 69  AFKRSSEEASQPNVMSIMMVDVGTSEERMAELEKKVSMLLKVVEKRDYEIASLKNHIESR 128
           A    S++AS   V+S+MMVDV T+E  + E+E+K++ L+KV+E+RD+EIA+LK+ +++ 
Sbjct: 71  A-SNLSDKASHLEVVSVMMVDV-TAEATVTEMERKINFLMKVIEERDHEIAALKDQMKAC 130

Query: 129 DAAESSHTLAVKSNDKGKKVLQ 149
           +  ESS T  VK+ DKGK V+Q
Sbjct: 131 ETGESSQTPVVKATDKGKNVVQ 150

[Close]
BLAST of Cla003023 vs. NCBI nr
Match: gi|307135838|gb|ADN33709.1| (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 97.4 bits (241), Expect = 2.2e-17
Identity = 52/117 (44.44%), Postives = 80/117 (68.38%), Query Frame = 1 

Query: 30  EEQPTFEITRNIWEQISRDPKAGVIIKENPTLDKHTSAFKRSSEEASQPNVMSIMMVDVG 89
           E++  F + +   EQ+    K G+II++NP  +  T     S +E S   V+S+MM+DV 
Sbjct: 3   EQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKE-SHLEVVSVMMIDV- 62

Query: 90  TSEERMAELEKKVSMLLKVVEKRDYEIASLKNHIESRDAAESSHTLAVKSNDKGKKV 147
           T+E  MAE+EKK++ L+KVVE+RD+EIA+LK+ +++ ++AESS T  VK+ DKGK V
Sbjct: 63  TAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVKTTDKGKNV 117

[Close]
BLAST of Cla003023 vs. NCBI nr
Match: gi|307136413|gb|ADN34221.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-12
Identity = 47/108 (43.52%), Postives = 64/108 (59.26%), Query Frame = 1 

Query: 12  SDTSRRPITRSRSKEIQLEEQPTFEITRNIWEQISRDPKAGVIIKENPTLDKHTSAFKRS 71
           +DT  R I +S SK    +++    + +  WEQ+   PK G+IIKENP  +  T A    
Sbjct: 14  NDTYTRLIVQSHSKRSTQKQEQNSVLAKKSWEQLMESPKCGIIIKENPLFEDSTPA-SNL 73

Query: 72  SEEASQPNVMSIMMVDVGTSEERMAELEKKVSMLLKVVEKRDYEIASL 120
           SE+ S   V+SIMM DV T E  M E+E K++ L+KVVE+RDY I  L
Sbjct: 74  SEKESHLEVVSIMMADV-TVEAVMVEMEMKINFLMKVVEERDYGITVL 119

[Close]
BLAST of Cla003023 vs. NCBI nr
Match: gi|659118742|ref|XP_008459280.1| (PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 39/96 (40.62%), Postives = 68/96 (70.83%), Query Frame = 1 

Query: 39  RNIWEQISRDPKAGVIIKENPTLDKHTSAFKRSSEEASQPNVMSIMMVDVGTSEERMAEL 98
           ++I +Q+   PKAG+ IKENP  D   SA  +  +EA  P+VMS+MMVD+ T+E  M E+
Sbjct: 2   QSILKQLMLSPKAGIFIKENPLYDNFDSALSKLKKEA-HPDVMSVMMVDI-TAEAAMTEM 61

Query: 99  EKKVSMLLKVVEKRDYEIASLKNHIESRDAAESSHT 135
           E+K+++++KVV+++D++I +L+  ++  +  +SS T
Sbjct: 62  ERKINLVMKVVKEQDHKITALREQMQIHETTKSSQT 95

The following BLAST results are available for this feature:
BLAST of Cla003023 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBB0_CUCME3.5e-3862.41Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCP6_CUCME1.1e-1839.44Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GB67_CUCME1.5e-1744.44Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCM2_CUCME8.7e-1343.52Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCE3_CUCME8.1e-1134.62Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of Cla003023 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307135887|gb|ADN33752.1|5.0e-3862.41ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
gi|307136441|gb|ADN34247.1|1.5e-1839.44ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
gi|307135838|gb|ADN33709.1|2.2e-1744.44retrotransposon gag protein [Cucumis melo subsp. melo][more]
gi|307136413|gb|ADN34221.1|1.2e-1243.52hypothetical protein [Cucumis melo subsp. melo][more]
gi|659118742|ref|XP_008459280.1|1.6e-1240.63PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla003023Cla003023gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla003023Cla003023.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla003023.1.cds1Cla003023.1.cds1CDS