Cla002992.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002992
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr6 : 15178027 .. 15178478 (+)
Sequence length	273

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTCATTGCTTCCACATGAAGGTATCAGCGCTGCAGCTAACCTGTTTACTCTGATTGTGGAATCTGAGCTAAAAGGTGGTTAGAGCTTCCTTCTATATTTGAGAAATCCTTTCTTAATTTATATTATTAACTAATGGTGATATGGTTGCAGCTGCATCTGCCTCAGCATTAGATGACAATATCGAGTCTGAATATTTTCAAGCTTCCATTTCTGGTGAGAGAGAATTATAGTAAACAACTAGTTTTCGGAATAATTATTGTAATTGCTAACTGTCTACCTGCTACTGTATGTCATTATTTGCATTTTCTTGCTTCTACAGCCATGGATGAAAGATTAAGTGCTTATGCTCTTATTGCAAGGGCAGCAATAAATGTCACTGTTCCCTTCCTCATACGATTGTTTTCAGAGCGTCTCTCTAAGCTTAATCAGGTTCACATTTCCAAGCACTAA

mRNA sequence

AGTTCATTGCTTCCACATGAAGGTATCAGCGCTGCAGCTAACCTGTTTACTCTGATTGTGGAATCTGAGCTAAAAGGTGCTGCATCTGCCTCAGCATTAGATGACAATATCGAGTCTGAATATTTTCAAGCTTCCATTTCTGCCATGGATGAAAGATTAAGTGCTTATGCTCTTATTGCAAGGGCAGCAATAAATGTCACTGTTCCCTTCCTCATACGATTGTTTTCAGAGCGTCTCTCTAAGCTTAATCAGGTTCACATTTCCAAGCACTAA

Coding sequence (CDS)

AGTTCATTGCTTCCACATGAAGGTATCAGCGCTGCAGCTAACCTGTTTACTCTGATTGTGGAATCTGAGCTAAAAGGTGCTGCATCTGCCTCAGCATTAGATGACAATATCGAGTCTGAATATTTTCAAGCTTCCATTTCTGCCATGGATGAAAGATTAAGTGCTTATGCTCTTATTGCAAGGGCAGCAATAAATGTCACTGTTCCCTTCCTCATACGATTGTTTTCAGAGCGTCTCTCTAAGCTTAATCAGGTTCACATTTCCAAGCACTAA

Protein sequence

SSLLPHEGISAAANLFTLIVESELKGAASASALDDNIESEYFQASISAMDERLSAYALIARAAINVTVPFLIRLFSERLSKLNQVHISKH

Homology

[Close]

BLAST of Cla002992 vs. TrEMBL
Match: A0A0A0M0V8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G680090 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.1e-31
Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 1


Query: 1   SSLLPHEGISAAANLFTLIVESELKGAASASALDDNIESEYFQASISAMDERLSAYALIA 60
           +SLLP EGISAAANLF LIVESELK AASASALDDNIESEYFQAS+SAMDERLSAYALIA
Sbjct: 117 NSLLPQEGISAAANLFALIVESELK-AASASALDDNIESEYFQASVSAMDERLSAYALIA 176

Query: 61  RAAINVTVPFLIRLFSERLSKLNQ 85
           RAAINVTVPFLIRLFSERLSKLNQ
Sbjct: 177 RAAINVTVPFLIRLFSERLSKLNQ 199

[Close]

BLAST of Cla002992 vs. TrEMBL
Match: A0A068TVA2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00029742001 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.6e-23
Identity = 60/83 (72.29%), Postives = 74/83 (89.16%), Query Frame = 1


Query: 2   SLLPHEGISAAANLFTLIVESELKGAASASALDDNIESEYFQASISAMDERLSAYALIAR 61
           +LLP EGISAAANLF LIVESELK AASASA  D+ +++YFQASI+AMDERLS+YAL+AR
Sbjct: 463 ALLPSEGISAAANLFALIVESELK-AASASAFSDDNDADYFQASITAMDERLSSYALVAR 522

Query: 62  AAINVTVPFLIRLFSERLSKLNQ 85
           AA++ TVP L+RLFSER ++L+Q
Sbjct: 523 AALDATVPLLVRLFSERFARLHQ 544

[Close]

BLAST of Cla002992 vs. TrEMBL
Match: A0A0V0J004_SOLCH (Putative exportin-4-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.7e-22
Identity = 59/83 (71.08%), Postives = 73/83 (87.95%), Query Frame = 1


Query: 2   SLLPHEGISAAANLFTLIVESELKGAASASALDDNIESEYFQASISAMDERLSAYALIAR 61
           +++P EGI AA++LF LIVESEL+ AASASA +D  E++Y QASI+AMDERLS+YALIAR
Sbjct: 466 AVIPXEGIGAASHLFALIVESELR-AASASAFNDENETDYLQASITAMDERLSSYALIAR 525

Query: 62  AAINVTVPFLIRLFSERLSKLNQ 85
           AAINVTVPFLIRLFSE+ ++L Q
Sbjct: 526 AAINVTVPFLIRLFSEKFARLQQ 547

[Close]

BLAST of Cla002992 vs. TrEMBL
Match: K4DDS9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.3e-21
Identity = 58/83 (69.88%), Postives = 72/83 (86.75%), Query Frame = 1


Query: 2   SLLPHEGISAAANLFTLIVESELKGAASASALDDNIESEYFQASISAMDERLSAYALIAR 61
           +++P EGI A ++LF LIVESEL+ AASASA +D  E++Y QASI+AMDERLS+YALIAR
Sbjct: 199 AVIPLEGIGATSHLFALIVESELR-AASASAFNDENETDYLQASIAAMDERLSSYALIAR 258

Query: 62  AAINVTVPFLIRLFSERLSKLNQ 85
           AAINVTVPFLIRLFSE+ ++L Q
Sbjct: 259 AAINVTVPFLIRLFSEKFARLQQ 280

[Close]

BLAST of Cla002992 vs. TrEMBL
Match: B9S7K9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0609300 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-20
Identity = 58/82 (70.73%), Postives = 70/82 (85.37%), Query Frame = 1


Query: 3   LLPHEGISAAANLFTLIVESELKGAASASALDDNIESEYFQASISAMDERLSAYALIARA 62
           LLP EGI AA+NLF LIVESEL+  ASASA++D  +S+Y QASISAMDERLS+YALIARA
Sbjct: 461 LLPPEGILAASNLFALIVESELR-VASASAMNDKDDSDYLQASISAMDERLSSYALIARA 520

Query: 63  AINVTVPFLIRLFSERLSKLNQ 85
           A++VT+P L RLFSE  S+L+Q
Sbjct: 521 AVDVTIPLLARLFSECFSRLHQ 541

[Close]

BLAST of Cla002992 vs. NCBI nr
Match: gi|778664303|ref|XP_011660266.1| (PREDICTED: exportin-4 isoform X1 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 1.6e-31
Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 1


Query: 1   SSLLPHEGISAAANLFTLIVESELKGAASASALDDNIESEYFQASISAMDERLSAYALIA 60
           +SLLP EGISAAANLF LIVESELK AASASALDDNIESEYFQAS+SAMDERLSAYALIA
Sbjct: 459 NSLLPQEGISAAANLFALIVESELK-AASASALDDNIESEYFQASVSAMDERLSAYALIA 518

Query: 61  RAAINVTVPFLIRLFSERLSKLNQ 85
           RAAINVTVPFLIRLFSERLSKLNQ
Sbjct: 519 RAAINVTVPFLIRLFSERLSKLNQ 541

[Close]

BLAST of Cla002992 vs. NCBI nr
Match: gi|700211666|gb|KGN66762.1| (hypothetical protein Csa_1G680090 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 1.6e-31
Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 1


Query: 1   SSLLPHEGISAAANLFTLIVESELKGAASASALDDNIESEYFQASISAMDERLSAYALIA 60
           +SLLP EGISAAANLF LIVESELK AASASALDDNIESEYFQAS+SAMDERLSAYALIA
Sbjct: 117 NSLLPQEGISAAANLFALIVESELK-AASASALDDNIESEYFQASVSAMDERLSAYALIA 176

Query: 61  RAAINVTVPFLIRLFSERLSKLNQ 85
           RAAINVTVPFLIRLFSERLSKLNQ
Sbjct: 177 RAAINVTVPFLIRLFSERLSKLNQ 199

[Close]

BLAST of Cla002992 vs. NCBI nr
Match: gi|778664306|ref|XP_011660267.1| (PREDICTED: exportin-4 isoform X2 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 1.6e-31
Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 1


Query: 1   SSLLPHEGISAAANLFTLIVESELKGAASASALDDNIESEYFQASISAMDERLSAYALIA 60
           +SLLP EGISAAANLF LIVESELK AASASALDDNIESEYFQAS+SAMDERLSAYALIA
Sbjct: 356 NSLLPQEGISAAANLFALIVESELK-AASASALDDNIESEYFQASVSAMDERLSAYALIA 415

Query: 61  RAAINVTVPFLIRLFSERLSKLNQ 85
           RAAINVTVPFLIRLFSERLSKLNQ
Sbjct: 416 RAAINVTVPFLIRLFSERLSKLNQ 438

[Close]

BLAST of Cla002992 vs. NCBI nr
Match: gi|659086150|ref|XP_008443789.1| (PREDICTED: exportin-4 isoform X2 [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 3.6e-31
Identity = 79/84 (94.05%), Postives = 80/84 (95.24%), Query Frame = 1


Query: 1   SSLLPHEGISAAANLFTLIVESELKGAASASALDDNIESEYFQASISAMDERLSAYALIA 60
           SSLLP EGISAAANLF LIVESELK AASASALDDNIESEYFQAS+SAMDERLSAYALIA
Sbjct: 356 SSLLPQEGISAAANLFALIVESELK-AASASALDDNIESEYFQASVSAMDERLSAYALIA 415

Query: 61  RAAINVTVPFLIRLFSERLSKLNQ 85
           RAAINVTVPFLIRL SERLSKLNQ
Sbjct: 416 RAAINVTVPFLIRLLSERLSKLNQ 438

[Close]

BLAST of Cla002992 vs. NCBI nr
Match: gi|659086148|ref|XP_008443788.1| (PREDICTED: exportin-4 isoform X1 [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 3.6e-31
Identity = 79/84 (94.05%), Postives = 80/84 (95.24%), Query Frame = 1


Query: 1   SSLLPHEGISAAANLFTLIVESELKGAASASALDDNIESEYFQASISAMDERLSAYALIA 60
           SSLLP EGISAAANLF LIVESELK AASASALDDNIESEYFQAS+SAMDERLSAYALIA
Sbjct: 459 SSLLPQEGISAAANLFALIVESELK-AASASALDDNIESEYFQASVSAMDERLSAYALIA 518

Query: 61  RAAINVTVPFLIRLFSERLSKLNQ 85
           RAAINVTVPFLIRL SERLSKLNQ
Sbjct: 519 RAAINVTVPFLIRLLSERLSKLNQ 541

The following BLAST results are available for this feature:

BLAST of Cla002992 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0V8_CUCSA	1.1e-31	94.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G680090 PE=4 SV=1	[more]
A0A068TVA2_COFCA	5.6e-23	72.29	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00029742001 PE=4 SV=1	[more]
A0A0V0J004_SOLCH	4.7e-22	71.08	Putative exportin-4-like OS=Solanum chacoense PE=4 SV=1	[more]
K4DDS9_SOLLC	2.3e-21	69.88	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
B9S7K9_RICCO	1.2e-20	70.73	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0609300 PE=4 SV=1	[more]

BLAST of Cla002992 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778664303\|ref\|XP_011660266.1\|	1.6e-31	94.05	PREDICTED: exportin-4 isoform X1 [Cucumis sativus]	[more]
gi\|700211666\|gb\|KGN66762.1\|	1.6e-31	94.05	hypothetical protein Csa_1G680090 [Cucumis sativus]	[more]
gi\|778664306\|ref\|XP_011660267.1\|	1.6e-31	94.05	PREDICTED: exportin-4 isoform X2 [Cucumis sativus]	[more]
gi\|659086150\|ref\|XP_008443789.1\|	3.6e-31	94.05	PREDICTED: exportin-4 isoform X2 [Cucumis melo]	[more]
gi\|659086148\|ref\|XP_008443788.1\|	3.6e-31	94.05	PREDICTED: exportin-4 isoform X1 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla002992	Cla002992	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla002992	Cla002992.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla002992.1.cds1	Cla002992.1.cds1	CDS
Cla002992.1.cds2	Cla002992.1.cds2	CDS
Cla002992.1.cds3	Cla002992.1.cds3	CDS