Cla002679.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002679
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr3 : 14045509 .. 14046873 (-)
Sequence length	615

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAAGGAATTAAGACTGCACGAGATAGTCATAAGATTTGAGGATCTAGTTTCTAAGCTTGGGCTGGGGTTAAAACCTCACGGGATGGTCAAGGGTGCCGATCACCTAGTTCCTGATCCTGTGGGAGGTATCTCTTGTGGGATGGTCAGAAGACCAACGAGTCTAGCTTTTGATCTCTCAGAGGTAAGACTATGTGCACATAGAGGACATGGAGAAATCCAATTGCTTGCCAGAGTGAGCCAGCAGAGTAGAGAATGGTACTGGGTTGTGCGTGATATTGGAGGTTTGATTATATTCTATTGTTTCCACTTTTTTTTTTTTTTTATATTCTAGAAATGGTCATGAGTACCCTAGTTATATGTTGACCACTCACTCGACTTTGTAAGCTCATCCTTTCGTTTTATGTTTCCTTTCCAAGTAGCAGCAGAGTTCCTGTTGTGTGAAGTTGAGGTATGCCATGCCGTAGTGCTACTTTATGTTAGGGTCAAATATAAGTTGTGAACATTTATGTTGTAAATAAATCCTAAGCTGTCACATTAAGAGTACAATATTTTCTATGATTATAAGTTATATTCGCATGTTAATGGACGAAGATGGTAAAGTCTTGGTGTTGCTTTGCGATTCTTAGGTGTAGGGACTCTCTTTTTTCTCTTGTTAGAATGGAGGTGGGGGATGGTCGATGTTGTGGCATGTGGTTTGATCTGTGGTTGCATCGGGATCCTCTTTTGGATTAGTATGGTGATTGGGTCATCTATGATGCAGCTAGTAAGCGGGATGCTCATCTTTAAGATTTTATTTCCAAGATTGGTTCTTGGCAGTGGTCATATACTACTTGGGAATTGACGGAAATCGCTGGGTTACCTGAGGGTGTGGAGATTAGAGTGGGGTGTGAGGATAGGTGGGTCTAGATTCATGAGAGGTCTGGTAAGTTTTCCATTAGGATTGCTTGGGAGGCGTTGAGACCGACGCATAAGAGGGTGTTGTGAGCTAGCATTATGTGGTTTGGGGGTAATATTCCTTGGCATTCTTTTAGGGATAGGCTGGGGACATGGGATTGGTTATTTAGGTAGGGGGTCACGCATACTTCGTTGTGCTTGCGTTGTGAGGGGGGTTGAGTCTCAGGATCATCTGTCCCTTGAGTGCCCCTTTGGGTTTGTGGTGTGGGCTAGTGTGCAGAGGTTTATGGGTTCGTCCCATCAGGTGGCAGGGTGGACTATGAAGCTTGAGTGGGTTTGTAGGATGGGGCGTGGTAGTGGGGCTAGGAGTAATTATGGCGTGTTTTCTGGTGTGCCTCTATTTACTTTGTGTGGCAAGAAAGGAACCGTCATTTACATGGTGGTTCCTTTCGTCGTGCAGAAGTGA

mRNA sequence

ATGATAAAGGAATTAAGACTGCACGAGATAGTCATAAGATTTGAGGATCTAGTTTCTAAGCTTGGGCTGGGGTTAAAACCTCACGGGATGGTCAAGGGTGCCGATCACCTAGTTCCTGATCCTGTGGGAGGTATCTCTTGTGGGATGGTCAGAAGACCAACGAGTCTAGCTTTTGATCTCTCAGAGGTAAGACTATGTGCACATAGAGGACATGGAGAAATCCAATTGCTTGCCAGAGTGAGCCAGCAGAGTAGAGAATGGTACTGGGTTGTGCGTGATATTGGAGGGATAGGCTGGGGACATGGGATTGGTTATTTAGGTAGGGGGTCACGCATACTTCGTTGTGCTTGCGTTGTGAGGGGGGTTGAGTCTCAGGATCATCTGTCCCTTGAGTGCCCCTTTGGGTTTGTGGTGTGGGCTAGTGTGCAGAGGTTTATGGGTTCGTCCCATCAGGTGGCAGGGTGGACTATGAAGCTTGAGTGGGTTTGTAGGATGGGGCGTGGTAGTGGGGCTAGGAGTAATTATGGCGTGTTTTCTGGTGTGCCTCTATTTACTTTGTGTGGCAAGAAAGGAACCGTCATTTACATGGTGGTTCCTTTCGTCGTGCAGAAGTGA

Coding sequence (CDS)

ATGATAAAGGAATTAAGACTGCACGAGATAGTCATAAGATTTGAGGATCTAGTTTCTAAGCTTGGGCTGGGGTTAAAACCTCACGGGATGGTCAAGGGTGCCGATCACCTAGTTCCTGATCCTGTGGGAGGTATCTCTTGTGGGATGGTCAGAAGACCAACGAGTCTAGCTTTTGATCTCTCAGAGGTAAGACTATGTGCACATAGAGGACATGGAGAAATCCAATTGCTTGCCAGAGTGAGCCAGCAGAGTAGAGAATGGTACTGGGTTGTGCGTGATATTGGAGGGATAGGCTGGGGACATGGGATTGGTTATTTAGGTAGGGGGTCACGCATACTTCGTTGTGCTTGCGTTGTGAGGGGGGTTGAGTCTCAGGATCATCTGTCCCTTGAGTGCCCCTTTGGGTTTGTGGTGTGGGCTAGTGTGCAGAGGTTTATGGGTTCGTCCCATCAGGTGGCAGGGTGGACTATGAAGCTTGAGTGGGTTTGTAGGATGGGGCGTGGTAGTGGGGCTAGGAGTAATTATGGCGTGTTTTCTGGTGTGCCTCTATTTACTTTGTGTGGCAAGAAAGGAACCGTCATTTACATGGTGGTTCCTTTCGTCGTGCAGAAGTGA

Protein sequence

MIKELRLHEIVIRFEDLVSKLGLGLKPHGMVKGADHLVPDPVGGISCGMVRRPTSLAFDLSEVRLCAHRGHGEIQLLARVSQQSREWYWVVRDIGGIGWGHGIGYLGRGSRILRCACVVRGVESQDHLSLECPFGFVVWASVQRFMGSSHQVAGWTMKLEWVCRMGRGSGARSNYGVFSGVPLFTLCGKKGTVIYMVVPFVVQK

Homology

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BLAST of Cla002679 vs. NCBI nr
Match: gi|659102432|ref|XP_008452126.1| (PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 2.8e-07
Identity = 27/60 (45.00%), Postives = 35/60 (58.33%), Query Frame = 1


Query: 113 LRCACVVRGVESQDHLSLECPFGFVVWASVQRFMGSSHQVAGWTMKLEWVCRMGRGSGAR 172
           L C     G+ES+DHL   CPFG  VW+ V R M SSH++  W ++L W+C  G   G R
Sbjct: 839 LSCILCEGGMESRDHLFFSCPFGGDVWSRVLRIMASSHRIGHWGVELSWICHQGIRKGVR 898

The following BLAST results are available for this feature:

BLAST of Cla002679 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102432\|ref\|XP_008452126.1\|	2.8e-07	45.00	PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla002679	Cla002679	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla002679	Cla002679.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla002679.1.cds2	Cla002679.1.cds2	CDS
Cla002679.1.cds1	Cla002679.1.cds1	CDS