Cla002462.1 (mRNA) Watermelon (97103) v1

Overview
NameCla002462
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr8 : 9846649 .. 9846846 (+)
Sequence length198
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAGCAACAACGAGAATGTCAAAGCTCGCCGCCCACGACGGTCGGGGAACGCTGGCGCTGGCGGTCAGATTAACCGTCTTTCTCGATCAGCTCGAAGGACCGGCGGCAGTAAAACCAACCGTGGTCCTCCGCCGAAGATGAGCACTGGCGGCGGCGGTCAGACAAACTAA

mRNA sequence

ATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAGCAACAACGAGAATGTCAAAGCTCGCCGCCCACGACGGTCGGGGAACGCTGGCGCTGGCGGTCAGATTAACCGTCTTTCTCGATCAGCTCGAAGGACCGGCGGCAGTAAAACCAACCGTGGTCCTCCGCCGAAGATGAGCACTGGCGGCGGCGGTCAGACAAACTAA

Coding sequence (CDS)

ATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAGCAACAACGAGAATGTCAAAGCTCGCCGCCCACGACGGTCGGGGAACGCTGGCGCTGGCGGTCAGATTAACCGTCTTTCTCGATCAGCTCGAAGGACCGGCGGCAGTAAAACCAACCGTGGTCCTCCGCCGAAGATGAGCACTGGCGGCGGCGGTCAGACAAACTAA

Protein sequence

MESSSSSLQKSNNENVKARRPRRSGNAGAGGQINRLSRSARRTGGSKTNRGPPPKMSTGGGGQTN
Homology
[Close]
BLAST of Cla002462 vs. TrEMBL
Match: A0A0A0KAN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020130 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.4e-14
Identity = 46/66 (69.70%), Postives = 50/66 (75.76%), Query Frame = 1 

Query: 1  MESSSSSLQKSNNENVKARRPRRSGNAGAGGQINRL-SRSARRTGGSKTNRGPPPKMSTG 60
          MESSSSSL+K+NN+N KA R R S NAG G QINR  SR  +R   SKTNR PPPK STG
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60

Query: 61 GGGQTN 66
          GGGQTN
Sbjct: 61 GGGQTN 66

[Close]
BLAST of Cla002462 vs. TrEMBL
Match: A0A0A0L7D2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258100 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.2e-08
Identity = 39/66 (59.09%), Postives = 42/66 (63.64%), Query Frame = 1 

Query: 1  MESSSSSLQKSNNENVKARRPRR-SGNAGAGGQINRLSRSARRTGGSKTNRGPPPKMSTG 60
          MESSSS LQK+N +N KA R RR + NA       R SR  RR   SK N  PPPK STG
Sbjct: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNA------RRHSRPPRRARNSKINPAPPPKKSTG 60

Query: 61 GGGQTN 66
          GGGQTN
Sbjct: 61 GGGQTN 60

[Close]
BLAST of Cla002462 vs. NCBI nr
Match: gi|700190695|gb|KGN45899.1| (hypothetical protein Csa_6G020130 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 6.4e-14
Identity = 46/66 (69.70%), Postives = 50/66 (75.76%), Query Frame = 1 

Query: 1  MESSSSSLQKSNNENVKARRPRRSGNAGAGGQINRL-SRSARRTGGSKTNRGPPPKMSTG 60
          MESSSSSL+K+NN+N KA R R S NAG G QINR  SR  +R   SKTNR PPPK STG
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60

Query: 61 GGGQTN 66
          GGGQTN
Sbjct: 61 GGGQTN 66

[Close]
BLAST of Cla002462 vs. NCBI nr
Match: gi|700202575|gb|KGN57708.1| (hypothetical protein Csa_3G258100 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 8.9e-08
Identity = 39/66 (59.09%), Postives = 42/66 (63.64%), Query Frame = 1 

Query: 1  MESSSSSLQKSNNENVKARRPRR-SGNAGAGGQINRLSRSARRTGGSKTNRGPPPKMSTG 60
          MESSSS LQK+N +N KA R RR + NA       R SR  RR   SK N  PPPK STG
Sbjct: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNA------RRHSRPPRRARNSKINPAPPPKKSTG 60

Query: 61 GGGQTN 66
          GGGQTN
Sbjct: 61 GGGQTN 60

The following BLAST results are available for this feature:
BLAST of Cla002462 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAN3_CUCSA4.4e-1469.70Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020130 PE=4 SV=1[more]
A0A0A0L7D2_CUCSA6.2e-0859.09Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258100 PE=4 SV=1[more]
BLAST of Cla002462 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190695|gb|KGN45899.1|6.4e-1469.70hypothetical protein Csa_6G020130 [Cucumis sativus][more]
gi|700202575|gb|KGN57708.1|8.9e-0859.09hypothetical protein Csa_3G258100 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla002462Cla002462gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla002462Cla002462.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla002462.1.cds1Cla002462.1.cds1CDS