Cla002297.1 (mRNA) Watermelon (97103) v1

Overview
NameCla002297
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr7 : 14131197 .. 14133477 (+)
Sequence length813
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAACCTGAAATCTAAGAAGGATATTTTGATAAAAGTTGGTATTGCATTTCGGAACTTCAAAAATTGTCTGAGGAGTAAGCATATTGACCCATATACAGACATCCCAGAATGCTTGAAATTTCCTCCATCTGAGTATCCTTCTATCGATTTAGCTGATTGGGAATTTTTTGTTAATCAAGCTCTATCTGACGACTTCCGGGTTAGTGTTATTAATTATTTTATGTTTGAATCACCAAATATGTTGCTTAATTTAACTTGTGTTCTTTTTGTGTATTGTAGGCATGTAGAAATTTGCAAAAAGAGTGGCACAAACAATACAAATACAATCATAGAACATCACGCAAAGGTTATGCAAATTTAAGTGAGGAGTTGGTAAGTTTTATGTGATAACAATTTATTATTTACCAAGAATTTATTATGTTGTGTTTATTAAACTTTAGTTTACTCTTATATACTTGTAGAAAAAACAAGGAAAATTGTCTCCGACAGCAGATCGAGCTACTGTTTGGAAACATGCTGAACTAGGAATGAGGAATTTTTAAATAAAGACGTCGAAGAGGTTGCAGGGAAAGTTGTAAGTAATAATCTAATGATTGCTTCTCTATGAGTGTATGTAATACATTATAATTTGTTTGAAAATAAATGTTTATCTATTAAAATTATAGGATGAACTGTCCAAGATTGTGTAAACAATAAAGGTTATTCAAATGATATATTGACCCAAGCATTGGGAACATCTGAACACCGAGGACGGGTAAGTGGTGTAGGGGGTTGATTACACCGTCATTATACTTTCACAAAAACACATTCCAACAGAACCCACACAAACTCCAATGAATGACGATCTAGAGACAAATTGGAAAAAGGAGAAAGTACTGATTTTGGATCACTAAAAGTTAATGGTTAGACGTATGCACAAGTTAAATTCTCAAATGAAGGCCGAGGAAACACGTTTAGTTGCACATGATTAACAAATCATATCATCGCCCACACACGAGGAAAACATAGATCAGGTAAAAATTATATTTACATGATTAATAAGTTATTGTGTTGATGGATTATTTGACATTGATAATAGATTGACCGTTTGAATGTACGTTTTAGGGGAGACCTTGTAGTCTTGCTGTTGGAAATGTTGATAAAATTGTGGCAGCAGGTACTGTTTTTAAGAGACTATGGTCTAATGAAGTAGTTTATGGGGTAACACTTGGGGTGAATGAGGTGTGGGTTCTCATTGAAGTTGTGGACGACACCAACTCCACGTTACCCATACCTGTAGTTGGAAGTGTTTATAGGGTTTCTGATGTAATGGGATCGTATGTTTCATGGCCAAAACATTTGGTGGTTGTAGAAAAAGCAGAAAAGGTAAAGTTTATTTATGAAAACATGAGTTATTTCATTTGCATGTTCCATTTTAATGTTTGACATTTTTTGGATAGTCACAAAAGAAGCATTCTCGGGAGTTAGCTGCTTTAAAAGAAAAGAAACCAAAGGCCGATGTGTCAAAATTGCCAACAACGATACAATTTGTGCTAAAATTTGTGGAAGAGGAGATGGTTGATGAATATTTGCATATCCCGATTAATGATCAGATTTTTTGATATCATTTCAATTTCTATATGATGAAGGATACATCAAACAATTATGTCAGATGGAAGAATTGACACTCTCAATTATAACGGGTTATATCGCTTATGTACAATTAACTAATTTGATTAGTATTAATAATTTATTGTAACATTTATAATATTAAAAGTTTTTTTTTTTATGATCTTAGATGTTTGGTAGCAGCCGACCCAAATATATTAGAGGATTATGCATTTATTCATCCTATGCAAATTTCAAGTGGCTCAGGCACTGATGAACAGCGTTCTACATTTTTGTGCAACAGGTTGACCTCAACAAAGAATAAGTTGTTGATATGTCTGTATAATCCCAGGTAAGTTTAGAAAATGAGTATTTTAATAATTTTTTATTGATAAACATTGATTTATCTATATTTTTTTAGTTACGTTTTTTACGTAGATATCATTGGATGGTAGTTGTCATCAATCTACGGAGTAATACAGTGTATTCAGTTGACTCCATGGGACTTGGTGTTCGTGAAGATGTGAAAACTATTGTGAATACGTAAGTAATTAAAAGTATTTCACATTATGTATATTCATTATGTTAACAATCTAATATCTTTGTGCATTTATTTTGTTTAAGGGAATAAGAATGTTTTATGCTCGAACAGGTACACGATCTCAACTTGTTATGTGGGTACCCGTTAA

mRNA sequence

ATGGTAAACCTGAAATCTAAGAAGGATATTTTGATAAAAGTTGGTATTGCATTTCGGAACTTCAAAAATTGTCTGAGGAGTAAGCATATTGACCCATATACAGACATCCCAGAATGCTTGAAATTTCCTCCATCTGAGTATCCTTCTATCGATTTAGCTGATTGGGAATTTTTTGTTAATCAAGCTCTATCTGACGACTTCCGGGCATGTAGAAATTTGCAAAAAGAGTGGCACAAACAATACAAATACAATCATAGAACATCACGCAAAGGTTATGCAAATTTAAGTGAGGAGTTGGGGAGACCTTGTAGTCTTGCTGTTGGAAATGTTGATAAAATTGTGGCAGCAGGTACTGTTTTTAAGAGACTATGGTCTAATGAAGTAGTTTATGGGGTAACACTTGGGGTGAATGAGGTGTGGGTTCTCATTGAAGTTGTGGACGACACCAACTCCACGTTACCCATACCTGTAGTTGGAAGTGTTTATAGGGTTTCTGATGTAATGGGATCATGTTTGGTAGCAGCCGACCCAAATATATTAGAGGATTATGCATTTATTCATCCTATGCAAATTTCAAGTGGCTCAGGCACTGATGAACAGCGTTCTACATTTTTGTGCAACAGGTTGACCTCAACAAAGAATAAGTTGTTGATATGTCTGTATAATCCCAGATATCATTGGATGGTAGTTGTCATCAATCTACGGAGTAATACAGTGTATTCAGTTGACTCCATGGGACTTGGTGTTCGTGAAGATGTGAAAACTATTGTGAATACGTACACGATCTCAACTTGTTATGTGGGTACCCGTTAA

Coding sequence (CDS)

ATGGTAAACCTGAAATCTAAGAAGGATATTTTGATAAAAGTTGGTATTGCATTTCGGAACTTCAAAAATTGTCTGAGGAGTAAGCATATTGACCCATATACAGACATCCCAGAATGCTTGAAATTTCCTCCATCTGAGTATCCTTCTATCGATTTAGCTGATTGGGAATTTTTTGTTAATCAAGCTCTATCTGACGACTTCCGGGCATGTAGAAATTTGCAAAAAGAGTGGCACAAACAATACAAATACAATCATAGAACATCACGCAAAGGTTATGCAAATTTAAGTGAGGAGTTGGGGAGACCTTGTAGTCTTGCTGTTGGAAATGTTGATAAAATTGTGGCAGCAGGTACTGTTTTTAAGAGACTATGGTCTAATGAAGTAGTTTATGGGGTAACACTTGGGGTGAATGAGGTGTGGGTTCTCATTGAAGTTGTGGACGACACCAACTCCACGTTACCCATACCTGTAGTTGGAAGTGTTTATAGGGTTTCTGATGTAATGGGATCATGTTTGGTAGCAGCCGACCCAAATATATTAGAGGATTATGCATTTATTCATCCTATGCAAATTTCAAGTGGCTCAGGCACTGATGAACAGCGTTCTACATTTTTGTGCAACAGGTTGACCTCAACAAAGAATAAGTTGTTGATATGTCTGTATAATCCCAGATATCATTGGATGGTAGTTGTCATCAATCTACGGAGTAATACAGTGTATTCAGTTGACTCCATGGGACTTGGTGTTCGTGAAGATGTGAAAACTATTGTGAATACGTACACGATCTCAACTTGTTATGTGGGTACCCGTTAA

Protein sequence

MVNLKSKKDILIKVGIAFRNFKNCLRSKHIDPYTDIPECLKFPPSEYPSIDLADWEFFVNQALSDDFRACRNLQKEWHKQYKYNHRTSRKGYANLSEELGRPCSLAVGNVDKIVAAGTVFKRLWSNEVVYGVTLGVNEVWVLIEVVDDTNSTLPIPVVGSVYRVSDVMGSCLVAADPNILEDYAFIHPMQISSGSGTDEQRSTFLCNRLTSTKNKLLICLYNPRYHWMVVVINLRSNTVYSVDSMGLGVREDVKTIVNTYTISTCYVGTR
Homology
[Close]
BLAST of Cla002297 vs. TrEMBL
Match: A5BU47_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003642 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 50/104 (48.08%), Postives = 65/104 (62.50%), Query Frame = 1 

Query: 5    KSKKDILIKVGIAFRNFKNCLRSKHIDPYTDIPECLKFPPSEYPSIDLADWEFFVNQALS 64
            KS+++ ++ VG  FR+FKN L  KHI P+ D PE LK PP+EY  ID  DW  FV   LS
Sbjct: 1099 KSRRNCMLTVGKCFRSFKNTLTVKHILPFKDEPELLKKPPAEYHFIDDEDWNIFVKNRLS 1158

Query: 65   DDFRACRNLQKEWHKQYKYNHRTSRKGYANLSEELGRPCSLAVG 109
            + F+  R  QK+  K++ YNH  SRKGYA L EE+  P    +G
Sbjct: 1159 EKFQEYREAQKQRRKKHIYNHHLSRKGYAGLEEEMLAPQKALIG 1202

[Close]
BLAST of Cla002297 vs. TrEMBL
Match: A5BMG6_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_036906 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.5e-18
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 1 

Query: 5   KSKKDILIKVGIAFRNFKNCLRSKHIDPYTDIPECLKFPPSEYPSIDLADWEFFVNQALS 64
           KS+++ ++ +G  FR+FKN L  KHI P+ D PE LK PP+EY  ID  DW  FV   LS
Sbjct: 852 KSRRNCMLTLGKCFRSFKNTLTVKHILPFKDEPELLKKPPAEYHFIDDEDWNIFVKNRLS 911

Query: 65  DDFRACRNLQKEWHKQYKYNHRTSRKGYANLSEELGRP 103
           + F+  R +QK+  K++ YNH  SRKGYA L EE+  P
Sbjct: 912 EKFQEYREVQKQRRKKHIYNHHLSRKGYAGLEEEMLAP 949

[Close]
BLAST of Cla002297 vs. TrEMBL
Match: A5BSS4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030496 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.0e-17
Identity = 46/95 (48.42%), Postives = 62/95 (65.26%), Query Frame = 1 

Query: 5   KSKKDILIKVGIAFRNFKNCLRSKHIDPYTDIPECLKFPPSEYPSIDLADWEFFVNQALS 64
           KS+++ ++ +G  FR+FKN L  KHI P+ D PE LK  P+EY  ID  DW  FV   LS
Sbjct: 896 KSRRNCMLTLGKCFRSFKNTLTVKHILPFKDEPELLKKXPAEYHFIDDEDWNIFVKNRLS 955

Query: 65  DDFRACRNLQKEWHKQYKYNHRTSRKGYANLSEEL 100
           + F+  R +QK+  K++ YNH  SRKGYA L EE+
Sbjct: 956 EKFQEYREVQKQRRKKHIYNHHLSRKGYARLEEEM 990

[Close]
BLAST of Cla002297 vs. TrEMBL
Match: A5BIL3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034073 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.2e-15
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 1 

Query: 5    KSKKDILIKVGIAFRNFKNCLRSKHIDPYTDIPECLKFPPSEYPSIDLADWEFFVNQALS 64
            K++++ ++ +G  F +FKN L  KHI P+ D P   K PP+EY  ID  DW  FV   LS
Sbjct: 919  KNRRNCMLTLGKCFXSFKNXLTVKHILPFKDEPXLXKKPPAEYHFIDDEDWNIFVKNRLS 978

Query: 65   DDFRACRNLQKEWHKQYKYNHRTSRKGYANLSEELGRP 103
            + F+  R +QK+  K++ YNH  SRKGYA L EE+  P
Sbjct: 979  EKFQEYREVQKQRRKKHIYNHHLSRKGYAGLEEEMLAP 1016

[Close]
BLAST of Cla002297 vs. TrEMBL
Match: A5AWV0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018163 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.2e-15
Identity = 44/95 (46.32%), Postives = 62/95 (65.26%), Query Frame = 1 

Query: 5   KSKKDILIKVGIAFRNFKNCLRSKHIDPYTDIPECLKFPPSEYPSIDLADWEFFVNQALS 64
           KS+++ ++ +G  FR+FKN L  K++ P+ D PE LK PP EY  I+  DW  FV + LS
Sbjct: 885 KSRRNCMLTMGKCFRSFKNMLTVKYVIPFKDQPEVLKKPPIEYIFIEDEDWTIFVKERLS 944

Query: 65  DDFRACRNLQKEWHKQYKYNHRTSRKGYANLSEEL 100
             F+  R +QKE  K++ YNH  SRKGYA L +E+
Sbjct: 945 KRFQDFREVQKERRKKHIYNHHLSRKGYAGLEDEM 979

[Close]
BLAST of Cla002297 vs. NCBI nr
Match: gi|147862302|emb|CAN79325.1| (hypothetical protein VITISV_003642 [Vitis vinifera])

HSP 1 Score: 101.7 bits (252), Expect = 2.1e-18
Identity = 50/104 (48.08%), Postives = 65/104 (62.50%), Query Frame = 1 

Query: 5    KSKKDILIKVGIAFRNFKNCLRSKHIDPYTDIPECLKFPPSEYPSIDLADWEFFVNQALS 64
            KS+++ ++ VG  FR+FKN L  KHI P+ D PE LK PP+EY  ID  DW  FV   LS
Sbjct: 1099 KSRRNCMLTVGKCFRSFKNTLTVKHILPFKDEPELLKKPPAEYHFIDDEDWNIFVKNRLS 1158

Query: 65   DDFRACRNLQKEWHKQYKYNHRTSRKGYANLSEELGRPCSLAVG 109
            + F+  R  QK+  K++ YNH  SRKGYA L EE+  P    +G
Sbjct: 1159 EKFQEYREAQKQRRKKHIYNHHLSRKGYAGLEEEMLAPQKALIG 1202

[Close]
BLAST of Cla002297 vs. NCBI nr
Match: gi|147839092|emb|CAN59766.1| (hypothetical protein VITISV_036906 [Vitis vinifera])

HSP 1 Score: 99.8 bits (247), Expect = 8.0e-18
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 1 

Query: 5   KSKKDILIKVGIAFRNFKNCLRSKHIDPYTDIPECLKFPPSEYPSIDLADWEFFVNQALS 64
           KS+++ ++ +G  FR+FKN L  KHI P+ D PE LK PP+EY  ID  DW  FV   LS
Sbjct: 852 KSRRNCMLTLGKCFRSFKNTLTVKHILPFKDEPELLKKPPAEYHFIDDEDWNIFVKNRLS 911

Query: 65  DDFRACRNLQKEWHKQYKYNHRTSRKGYANLSEELGRP 103
           + F+  R +QK+  K++ YNH  SRKGYA L EE+  P
Sbjct: 912 EKFQEYREVQKQRRKKHIYNHHLSRKGYAGLEEEMLAP 949

[Close]
BLAST of Cla002297 vs. NCBI nr
Match: gi|731439612|ref|XP_010647543.1| (PREDICTED: uncharacterized protein LOC104878643 [Vitis vinifera])

HSP 1 Score: 97.8 bits (242), Expect = 3.0e-17
Identity = 47/95 (49.47%), Postives = 62/95 (65.26%), Query Frame = 1 

Query: 5   KSKKDILIKVGIAFRNFKNCLRSKHIDPYTDIPECLKFPPSEYPSIDLADWEFFVNQALS 64
           KS+++ ++ VG  FR+FKN L  KHI P+ D P+ LK PP+EY  ID  DW  FV   LS
Sbjct: 178 KSRRNCMLTVGKCFRSFKNTLTVKHILPFKDEPKLLKKPPAEYHFIDDEDWNIFVKNRLS 237

Query: 65  DDFRACRNLQKEWHKQYKYNHRTSRKGYANLSEEL 100
           + F+  R  QK+  K++ YNH  SRKGYA L EE+
Sbjct: 238 EKFQEYREAQKQRRKKHIYNHHLSRKGYAGLEEEM 272

[Close]
BLAST of Cla002297 vs. NCBI nr
Match: gi|731411767|ref|XP_010658124.1| (PREDICTED: uncharacterized protein LOC104881077 [Vitis vinifera])

HSP 1 Score: 97.8 bits (242), Expect = 3.0e-17
Identity = 50/112 (44.64%), Postives = 71/112 (63.39%), Query Frame = 1 

Query: 2   VNLKSKKDILIKVGIAFRNFKNCLRSKHIDPYTDIPECLKFPPSEYPSIDLADWEFFVNQ 61
           +N KS+++ ++ +G  FR+FKN L  K+I P+ D PE LK PP +Y  I+  DW  FV  
Sbjct: 91  LNHKSRRNCMLTMGKCFRSFKNLLTVKYILPFEDQPELLKRPPIQYTFIEDEDWTIFVKD 150

Query: 62  ALSDDFRACRNLQKEWHKQYKYNHRTSRKGYANLSEELGRPCSLAVGNVDKI 114
            LSD+F+  R +QKE  K+  YNH  SRKGYA L EE+     +A G+++ I
Sbjct: 151 RLSDNFKEYREIQKERRKRNIYNHHLSRKGYAGLEEEM----MVASGSIETI 198

[Close]
BLAST of Cla002297 vs. NCBI nr
Match: gi|731396612|ref|XP_010652578.1| (PREDICTED: uncharacterized protein LOC104879870 [Vitis vinifera])

HSP 1 Score: 97.1 bits (240), Expect = 5.2e-17
Identity = 47/98 (47.96%), Postives = 64/98 (65.31%), Query Frame = 1 

Query: 2   VNLKSKKDILIKVGIAFRNFKNCLRSKHIDPYTDIPECLKFPPSEYPSIDLADWEFFVNQ 61
           +N KS+++ ++ +G  FR+FKN L  K+I P+ D PE LK PP +Y  I+  DW  FV  
Sbjct: 30  LNHKSRRNCMLTMGKCFRSFKNLLTVKYILPFEDQPELLKRPPIQYTFIEDEDWTIFVKD 89

Query: 62  ALSDDFRACRNLQKEWHKQYKYNHRTSRKGYANLSEEL 100
            LSD+F+  R +QKE  K+  YNH  SRKGYA L EE+
Sbjct: 90  RLSDNFKEYREIQKERRKRNIYNHHLSRKGYAGLEEEM 127

The following BLAST results are available for this feature:
BLAST of Cla002297 vs. TrEMBL
Match NameE-valueIdentityDescription
A5BU47_VITVI1.5e-1848.08Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003642 PE=4 SV=1[more]
A5BMG6_VITVI5.5e-1848.98Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_036906 P... [more]
A5BSS4_VITVI8.0e-1748.42Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030496 PE=4 SV=1[more]
A5BIL3_VITVI1.2e-1544.90Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034073 PE=4 SV=1[more]
A5AWV0_VITVI1.2e-1546.32Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018163 PE=4 SV=1[more]
BLAST of Cla002297 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147862302|emb|CAN79325.1|2.1e-1848.08hypothetical protein VITISV_003642 [Vitis vinifera][more]
gi|147839092|emb|CAN59766.1|8.0e-1848.98hypothetical protein VITISV_036906 [Vitis vinifera][more]
gi|731439612|ref|XP_010647543.1|3.0e-1749.47PREDICTED: uncharacterized protein LOC104878643 [Vitis vinifera][more]
gi|731411767|ref|XP_010658124.1|3.0e-1744.64PREDICTED: uncharacterized protein LOC104881077 [Vitis vinifera][more]
gi|731396612|ref|XP_010652578.1|5.2e-1747.96PREDICTED: uncharacterized protein LOC104879870 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla002297Cla002297gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla002297Cla002297.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla002297.1.cds1Cla002297.1.cds1CDS
Cla002297.1.cds2Cla002297.1.cds2CDS
Cla002297.1.cds3Cla002297.1.cds3CDS
Cla002297.1.cds4Cla002297.1.cds4CDS
Cla002297.1.cds5Cla002297.1.cds5CDS
Cla002297.1.cds6Cla002297.1.cds6CDS


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.30.310.130coord: 211..258
score: 4.
NoneNo IPR availableunknownSSF54001Cysteine proteinasescoord: 198..259
score: 1.1