Cla001992.1 (mRNA) Watermelon (97103) v1

NameCla001992
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 21282631 .. 21283035 (-)
Sequence length405
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACAACCCCTAGAGTTTGATATTGACCCTGAGATTGTGAAAACCTTTAGAAGGACTAGGCAGAACAGGCGAAGAAGGACCAACCGAAACTCAGACAAAAACATGGCAGAACCACAGAACCCTGTTCAAGGTGAAAATCTAAACAATGTGAATGCAGATCCTCAAACGAACCATATTCTGTTGGCACATGACAGAAATAGGCCAATACGAGAGTATGCATCGCCAAATTTATATGATTTCTCGCAAGGAATCTTATGCCCCACCTTTGAGGGAAATGGAAGATTCGAGATGAAACTAGTCATGTTGCAGGCCGCAGGACAATTCGGGGGTGCCTTGGGTGAAGACCCGCATGCACATTTGAAGAGTTTTTTGGAGATATGTAACACTTTCTACATTTCATGA

mRNA sequence

ATGGGACAACCCCTAGAGTTTGATATTGACCCTGAGATTGTGAAAACCTTTAGAAGGACTAGGCAGAACAGGCGAAGAAGGACCAACCGAAACTCAGACAAAAACATGGCAGAACCACAGAACCCTGTTCAAGGTGAAAATCTAAACAATGTGAATGCAGATCCTCAAACGAACCATATTCTGTTGGCACATGACAGAAATAGGCCAATACGAGAGTATGCATCGCCAAATTTATATGATTTCTCGCAAGGAATCTTATGCCCCACCTTTGAGGGAAATGGAAGATTCGAGATGAAACTAGTCATGTTGCAGGCCGCAGGACAATTCGGGGGTGCCTTGGGTGAAGACCCGCATGCACATTTGAAGAGTTTTTTGGAGATATGTAACACTTTCTACATTTCATGA

Coding sequence (CDS)

ATGGGACAACCCCTAGAGTTTGATATTGACCCTGAGATTGTGAAAACCTTTAGAAGGACTAGGCAGAACAGGCGAAGAAGGACCAACCGAAACTCAGACAAAAACATGGCAGAACCACAGAACCCTGTTCAAGGTGAAAATCTAAACAATGTGAATGCAGATCCTCAAACGAACCATATTCTGTTGGCACATGACAGAAATAGGCCAATACGAGAGTATGCATCGCCAAATTTATATGATTTCTCGCAAGGAATCTTATGCCCCACCTTTGAGGGAAATGGAAGATTCGAGATGAAACTAGTCATGTTGCAGGCCGCAGGACAATTCGGGGGTGCCTTGGGTGAAGACCCGCATGCACATTTGAAGAGTTTTTTGGAGATATGTAACACTTTCTACATTTCATGA

Protein sequence

MGQPLEFDIDPEIVKTFRRTRQNRRRRTNRNSDKNMAEPQNPVQGENLNNVNADPQTNHILLAHDRNRPIREYASPNLYDFSQGILCPTFEGNGRFEMKLVMLQAAGQFGGALGEDPHAHLKSFLEICNTFYIS
BLAST of Cla001992 vs. TrEMBL
Match: U5CUK7_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03373p00007640 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.0e-10
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 1

Query: 53  ADPQTNHILLAHDRNRPIREYASPNLYDFSQGILCPTFEGNGRFEMKLV---MLQAAGQF 112
           A  + N I LA DR R IREYA+P   + + GI+ P  +    FE+K V   MLQ  GQF
Sbjct: 8   AHNEANPIALADDRARAIREYAAPMFNELNSGIVRPEIQAP-HFELKPVMFQMLQTVGQF 67

Query: 113 GGALGEDPHAHLKSFLEICNTF 132
           GG+  EDPH H++SFLE+ ++F
Sbjct: 68  GGSPTEDPHLHIRSFLEVSDSF 88

BLAST of Cla001992 vs. TrEMBL
Match: U5CUI2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-09
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 1

Query: 58  NHILLAHDRNRPIREYASPNLYDFSQGILCPTFEGNGRFEMKLVM---LQAAGQFGGALG 117
           N I+LA DR R IREYA+P   + + GI+ P  +   +FE+K VM   LQ  GQF G   
Sbjct: 11  NPIILADDRARAIREYAAPMFNELNPGIVRPEIQAP-QFELKPVMFQMLQTVGQFSGMPT 70

Query: 118 EDPHAHLKSFLEICNTFYI 134
           EDPH HL+SFLE+ ++F I
Sbjct: 71  EDPHLHLRSFLEVSDSFKI 88

BLAST of Cla001992 vs. NCBI nr
Match: gi|802601155|ref|XP_012073056.1| (PREDICTED: uncharacterized protein LOC105634756 [Jatropha curcas])

HSP 1 Score: 76.3 bits (186), Expect = 4.7e-11
Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = 1

Query: 3   QPLEFDIDPEIVKTFRRTRQNRRRRTNRNSDK-NMAEPQNPVQGENLNNVNADPQTNHIL 62
           +PL FD  PE+ KT RR    RR R NR+  + NM +  NP Q +N   +   PQ  H  
Sbjct: 121 EPLIFD--PEVEKTCRRNNAARRARENRSEQQANMDDEINP-QPQN-RPLAVSPQIRH-- 180

Query: 63  LAHDRNRPIREYASPNLYDFSQGILCPTFEGNGRFEMK---LVMLQAAGQFGGALGEDPH 122
                 R +R+Y +P+L   +  I  P  E N  FE+K   + ML  + Q+GG   EDP+
Sbjct: 181 --QPNVRTLRDYTTPSLNGATSSITRPRVEANN-FEIKPAIIQMLSTSIQYGGLPSEDPN 240

Query: 123 AHLKSFLEICNTF 132
           AH+ +FLEIC+TF
Sbjct: 241 AHITNFLEICDTF 244

BLAST of Cla001992 vs. NCBI nr
Match: gi|802751510|ref|XP_012088035.1| (PREDICTED: uncharacterized protein LOC105646725 [Jatropha curcas])

HSP 1 Score: 72.4 bits (176), Expect = 6.8e-10
Identity = 50/132 (37.88%), Postives = 69/132 (52.27%), Query Frame = 1

Query: 3   QPLEFDIDPEIVKTFRRTRQNRRRRTNRNSDKNMAEPQNPVQGENLNNVNADPQTNHILL 62
           +PL FD  PEI +TFRR   N  R+      +  A+  N  + EN N     P   H + 
Sbjct: 90  EPLVFD--PEIERTFRR--HNAARKAREIKLEQQADMAN--ENENRNENVVGPPLQHPI- 149

Query: 63  AHDRNRPIREYASPNLYDFSQGILCPTFEGNGRFEMK---LVMLQAAGQFGGALGEDPHA 122
                R +R+Y +PNL   +  I  P  E N  FE+K   + ML  + Q+GG   EDP+A
Sbjct: 150 -----RTLRDYTTPNLNGTTSNITRPRVEANN-FEIKPAIIQMLSTSIQYGGLPSEDPNA 208

Query: 123 HLKSFLEICNTF 132
           H+ +FLEIC+TF
Sbjct: 210 HITNFLEICDTF 208

BLAST of Cla001992 vs. NCBI nr
Match: gi|548830393|gb|ERM93434.1| (hypothetical protein AMTR_s03373p00007640 [Amborella trichopoda])

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 1

Query: 53  ADPQTNHILLAHDRNRPIREYASPNLYDFSQGILCPTFEGNGRFEMKLV---MLQAAGQF 112
           A  + N I LA DR R IREYA+P   + + GI+ P  +    FE+K V   MLQ  GQF
Sbjct: 8   AHNEANPIALADDRARAIREYAAPMFNELNSGIVRPEIQAP-HFELKPVMFQMLQTVGQF 67

Query: 113 GGALGEDPHAHLKSFLEICNTF 132
           GG+  EDPH H++SFLE+ ++F
Sbjct: 68  GGSPTEDPHLHIRSFLEVSDSF 88

BLAST of Cla001992 vs. NCBI nr
Match: gi|802796244|ref|XP_012092718.1| (PREDICTED: uncharacterized protein LOC105650428 [Jatropha curcas])

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 50/132 (37.88%), Postives = 69/132 (52.27%), Query Frame = 1

Query: 3   QPLEFDIDPEIVKTFRRTRQNRRRRTNRNSDKNMAEPQNPVQGENLNNVNADPQTNHILL 62
           +PL FD  PEI +T RR   N  R+T     +  A+  N  + EN N     P   H + 
Sbjct: 56  EPLIFD--PEIERTLRRL--NAARKTQEVKIEQQADMAN--ENENRNENVVGPPLQHPI- 115

Query: 63  AHDRNRPIREYASPNLYDFSQGILCPTFEGNGRFEMK---LVMLQAAGQFGGALGEDPHA 122
                R +R+Y +PNL   +  I  P  E N  FE+K   + ML  + Q+GG   EDP+A
Sbjct: 116 -----RTLRDYTTPNLNGTTSSITRPRVEANN-FEIKPAIIQMLSTSIQYGGLPSEDPNA 174

Query: 123 HLKSFLEICNTF 132
           H+ +FLEIC+TF
Sbjct: 176 HITNFLEICDTF 174

BLAST of Cla001992 vs. NCBI nr
Match: gi|802647059|ref|XP_012079737.1| (PREDICTED: uncharacterized protein LOC105640118 [Jatropha curcas])

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-09
Identity = 49/132 (37.12%), Postives = 70/132 (53.03%), Query Frame = 1

Query: 4   PLEFDIDPEIVKTFRRTRQNRRRRTNRNSDKNMAEPQNPVQGENLNNVNADPQTNHILLA 63
           PL FD  PEI KT RR    RR + NR   +++           +N  N  P  +  L A
Sbjct: 257 PLIFD--PEIEKTCRRNNAARRAQENRTEQQSI-----------MNENNNPPPPDMPLAA 316

Query: 64  HDRN-RPIREYASPNLYDFSQGILCPTFEGNGRFEMK---LVMLQAAGQFGGALGEDPHA 123
           + +N R +R+Y +P+L   +  I  P  E N  FE+K   + ML  + Q+GG   EDP+A
Sbjct: 317 NGQNVRTLRDYTTPSLNGATSSITRPRVEANN-FEIKPAIIQMLSTSIQYGGLPSEDPNA 374

Query: 124 HLKSFLEICNTF 132
           H+ +FLEIC+ F
Sbjct: 377 HITNFLEICDMF 374

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
U5CUK7_AMBTC8.0e-1047.56Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03373p00007640 PE=4 SV=... [more]
U5CUI2_AMBTC2.3e-0949.37Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
gi|802601155|ref|XP_012073056.1|4.7e-1139.85PREDICTED: uncharacterized protein LOC105634756 [Jatropha curcas][more]
gi|802751510|ref|XP_012088035.1|6.8e-1037.88PREDICTED: uncharacterized protein LOC105646725 [Jatropha curcas][more]
gi|548830393|gb|ERM93434.1|1.2e-0947.56hypothetical protein AMTR_s03373p00007640 [Amborella trichopoda][more]
gi|802796244|ref|XP_012092718.1|1.2e-0937.88PREDICTED: uncharacterized protein LOC105650428 [Jatropha curcas][more]
gi|802647059|ref|XP_012079737.1|1.5e-0937.12PREDICTED: uncharacterized protein LOC105640118 [Jatropha curcas][more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla001992Cla001992gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla001992Cla001992.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla001992.1.cds1Cla001992.1.cds1CDS