Cla001953.1 (mRNA) Watermelon (97103) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGATAGAAGAGAAAGAAGTGAATTTTGTGCGTTCCTCAGATGCGTGGGTCGCACACATACTGACAGGTTTGAGAGATCCCTTTGAAGCTTGTCTATCTGATGCAAGGAGGGAATTGCCTTCGTCAAAGGGCGATGTGCAAAGTTGTCTTGCAGAGGAGCAGGGAGAAAGGGTAGAAGAGGAATCAGTTGTTATAGAAGAAGTCGCTCGCAACAAAGAGGTAGTGAGCAAGCCAATAGAAACGCAAGGGGCTATCCTTGAAGAAACGGGTCATGAGGATCAACCACATGATTCCAATGATGGACCAATAAAAGAGTACATGGTCGCCAGTGCAACTAAGAGAACAAGGAATGAATTTGAAGAGGACGAAGAAGCGACACTTTCAATAAGAAAGAAGCAGAAGGTGTCCCAAGGGCCGGAACTGTTGGGTTTTATGCCCTAAAACTTGTAGATTGTAAATTTAATTATTTAACCGTCATTAAATCATTAATAAAGAGTTATTAATGTGTATTTTAATAAGCGTTATTGATTGTTTTTGTTTGTTTTGTCTTAATAACCCTAAATCCAATAAACTAACTCCTAGGCTGTTTTATGAGTCTTGATATAGTCTAAAGGGTCTATAGTATAGGGACAAGGCTGGGTACCTTATCCTCGTGACACTATGGATACAACTCACTTTGTATTTGATACAAACACAATGATCTAACGCGTTCGTGTAGGTGACATGCGAGTGGGGGTATCCAATGTGTTTGCATAAGACCGGACCACGAAATAGTAATCATTAGATGTAACTTTTTTTAATATGATTCAAATAATTAATTATTTATTTGGTTAAAATTCATATAAATAAATAGAGAGAGAACTAATTAATTAATTTAAATTGGCTTCAAATAATTGATTATTCAATTTGGATGAGATCCAAATTAAAGATTGTGCAGAAAATAGATAGAGGGAGAATTAATTAATTGATTTGAATTGGATTCAAATAATTAATTATTTAATTTGGATGAGATCCAAATTAAAGATTCTGCAAATATATATATATATTTAAATAAGATCTAAATACTTTAAACCATTTAATATGAGATATTATTTGGGTAGATATTCATTAATATTGGTTATTATTAAATTTTTTATTTAAAATTTCTACAAATGGGTTATCCTAATAGGATTAGGAGTAACCCATAGAATTCTATAAATAGGGCTCTTGCGAGCCTTCATAGAACACACTCTCTAAGAGACTAATCTCTACGATTACTCTAAAAATCTTCTTCTATTAATTCTCCCAATTTTCTTAGAAGAATTCTATGAAAAATCTTCTTCCCATTATTTCAATGAAGTGATTCCCACAAACCGGATTCTTGCCAGAGTCATAAAGAGGAAGATCTCTTGGAAAAGAAAGACTATAAAGAGAAGACTATCAGTTGGAGAATTATAGATTGGCAAAGGTATGATGCTTAACCTTTTCTTTATTTTTTGTATTTTTAATTCTTTCAATAAATCAAAGAACGCGATCACACACTTCTGCCGAGATTCAATTCCCTACAGGAACAACCAGTCGAGTCCTCAAAGGACGCTGCCAAGGATAAAGAGCCAAAAAACGTAGAAGGAGTAGACAATTCTGAGTCTGCCATTGTAACAACATCCTTCAATCGGATTGCTAAGAAGTTGGCAAGGAAGAAGGCCAAGCTAAGAAAGGAAATAAATGCCCTTAAAAAAGGCGCCAAGAGAATGGTCGCTGCGGCCTCTAGTAAAGAAACTAGAGAAGAAGCGCGAGTAGAGGAACAAGGAAATGCAGATAAACCACTCCCACCTGATCCGCAAGTTGATCAAGCAGCTGAAGATGTTGAAAGGGAAATGATTGACGAGGAAATGATTGAGAAGGCAATTGAGGAATTTGACAGAGAGCTGTAG ATGATAGAAGAGAAAGAAGTGAATTTTGTGCGTTCCTCAGATGCGTGGGTCGCACACATACTGACAGGTTTGAGAGATCCCTTTGAAGCTTGTCTATCTGATGCAAGGAGGGAATTGCCTTCGTCAAAGGGCGATGTGCAAAGTTGTCTTGCAGAGGAGCAGGGAGAAAGGGTAGAAGAGGAATCAGTTGTTATAGAAGAAGTCGCTCGCAACAAAGAGGTAGTGAGCAAGCCAATAGAAACGCAAGGGGCTATCCTTGAAGAAACGGGTCATGAGGATCAACCACATGATTCCAATGATGGACCAATAAAAGAGTACATGGTCGCCAGTGCAACTAAGAGAACAAGGAATGAATTTGAAGAGGACGAAGAAGCGACACTTTCAATAAGAAAGAAGCAGAAGGAACAACCAGTCGAGTCCTCAAAGGACGCTGCCAAGGATAAAGAGCCAAAAAACGTAGAAGGAGTAGACAATTCTGAGTCTGCCATTGTAACAACATCCTTCAATCGGATTGCTAAGAAGTTGGCAAGGAAGAAGGCCAAGCTAAGAAAGGAAATAAATGCCCTTAAAAAAGGCGCCAAGAGAATGGTCGCTGCGGCCTCTAGTAAAGAAACTAGAGAAGAAGCGCGAGTAGAGGAACAAGGAAATGCAGATAAACCACTCCCACCTGATCCGCAAGTTGATCAAGCAGCTGAAGATGTTGAAAGGGAAATGATTGACGAGGAAATGATTGAGAAGGCAATTGAGGAATTTGACAGAGAGCTGTAG ATGATAGAAGAGAAAGAAGTGAATTTTGTGCGTTCCTCAGATGCGTGGGTCGCACACATACTGACAGGTTTGAGAGATCCCTTTGAAGCTTGTCTATCTGATGCAAGGAGGGAATTGCCTTCGTCAAAGGGCGATGTGCAAAGTTGTCTTGCAGAGGAGCAGGGAGAAAGGGTAGAAGAGGAATCAGTTGTTATAGAAGAAGTCGCTCGCAACAAAGAGGTAGTGAGCAAGCCAATAGAAACGCAAGGGGCTATCCTTGAAGAAACGGGTCATGAGGATCAACCACATGATTCCAATGATGGACCAATAAAAGAGTACATGGTCGCCAGTGCAACTAAGAGAACAAGGAATGAATTTGAAGAGGACGAAGAAGCGACACTTTCAATAAGAAAGAAGCAGAAGGAACAACCAGTCGAGTCCTCAAAGGACGCTGCCAAGGATAAAGAGCCAAAAAACGTAGAAGGAGTAGACAATTCTGAGTCTGCCATTGTAACAACATCCTTCAATCGGATTGCTAAGAAGTTGGCAAGGAAGAAGGCCAAGCTAAGAAAGGAAATAAATGCCCTTAAAAAAGGCGCCAAGAGAATGGTCGCTGCGGCCTCTAGTAAAGAAACTAGAGAAGAAGCGCGAGTAGAGGAACAAGGAAATGCAGATAAACCACTCCCACCTGATCCGCAAGTTGATCAAGCAGCTGAAGATGTTGAAAGGGAAATGATTGACGAGGAAATGATTGAGAAGGCAATTGAGGAATTTGACAGAGAGCTGTAG MIEEKEVNFVRSSDAWVAHILTGLRDPFEACLSDARRELPSSKGDVQSCLAEEQGERVEEESVVIEEVARNKEVVSKPIETQGAILEETGHEDQPHDSNDGPIKEYMVASATKRTRNEFEEDEEATLSIRKKQKEQPVESSKDAAKDKEPKNVEGVDNSESAIVTTSFNRIAKKLARKKAKLRKEINALKKGAKRMVAAASSKETREEARVEEQGNADKPLPPDPQVDQAAEDVEREMIDEEMIEKAIEEFDREL
BLAST of Cla001953 vs. Swiss-Prot
Match: IF2_PERMH (Translation initiation factor IF-2 OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=infB PE=3 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 2.3e-06 Identity = 60/244 (24.59%), Postives = 109/244 (44.67%), Query Frame = 1
BLAST of Cla001953 vs. TrEMBL
Match: Q7QCP0_ANOGA (AGAP002737-PA (Fragment) OS=Anopheles gambiae GN=AgaP_AGAP002737 PE=4 SV=5) HSP 1 Score: 60.5 bits (145), Expect = 3.5e-06 Identity = 59/206 (28.64%), Postives = 98/206 (47.57%), Query Frame = 1
BLAST of Cla001953 vs. TrEMBL
Match: Q7QCP0_ANOGA (AGAP002737-PA (Fragment) OS=Anopheles gambiae GN=AgaP_AGAP002737 PE=4 SV=5) HSP 1 Score: 56.6 bits (135), Expect = 5.1e-05 Identity = 55/219 (25.11%), Postives = 99/219 (45.21%), Query Frame = 1
HSP 2 Score: 55.1 bits (131), Expect = 1.5e-04 Identity = 46/200 (23.00%), Postives = 89/200 (44.50%), Query Frame = 1
HSP 3 Score: 52.4 bits (124), Expect = 9.6e-04 Identity = 49/217 (22.58%), Postives = 96/217 (44.24%), Query Frame = 1
HSP 4 Score: 47.0 bits (110), Expect = 4.0e-02 Identity = 48/207 (23.19%), Postives = 94/207 (45.41%), Query Frame = 1
BLAST of Cla001953 vs. NCBI nr
Match: gi|929319391|ref|XP_014040282.1| (PREDICTED: axoneme-associated protein mst101(2)-like [Salmo salar]) HSP 1 Score: 62.0 bits (149), Expect = 1.7e-06 Identity = 56/227 (24.67%), Postives = 103/227 (45.37%), Query Frame = 1
BLAST of Cla001953 vs. NCBI nr
Match: gi|954466940|gb|KRY99368.1| (hypothetical protein T11_5004, partial [Trichinella zimbabwensis]) HSP 1 Score: 60.1 bits (144), Expect = 6.6e-06 Identity = 51/217 (23.50%), Postives = 97/217 (44.70%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
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