Cla001201.1 (mRNA) Watermelon (97103) v1

Overview
NameCla001201
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr0 : 2208681 .. 2209169 (+)
Sequence length489
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAGGGATCGGGTGATGGTAGCTTATTGCATTATGCGTCGCATCCCCCTTGATGTCGAATGCATAATTGCAACGCAGATAAGAGGGGTCTTCAACAAACCAAGAGGCCAACTCTTTTTCCCCTCACTTATCATGAACCTATACGCTAATGCTACCATCGGAGGGCAGACAGAAGTGTTAGACGCAGAGAAGATGATCGAAGTCAGTGGGGTAATCACCCATAAGACTCTGCGTCGGTTGATGAGAGGATCGCAACATTTGCCAGAGCCTGCTAAGGCCACCAAAAGACCTCATCAACCCACTCCGTCACCTAAAGTGTCGCCAAAGCCGCAAACGCAGAAGAAGGGGAAGTCATCCAAACTAAAACGCAAGACTGTGGCAAGTCCTTATCCCACCATTAGACCTTCCCCTTCCTCAAGTCCTTCACCTCCACTCCCATTAACTGCAAGAGAGCCAACGCCTCCTCCACCTTCTCCTGAGATGTAA

mRNA sequence

ATGTCAAGGGATCGGGTGATGGTAGCTTATTGCATTATGCGTCGCATCCCCCTTGATGTCGAATGCATAATTGCAACGCAGATAAGAGGGGTCTTCAACAAACCAAGAGGCCAACTCTTTTTCCCCTCACTTATCATGAACCTATACGCTAATGCTACCATCGGAGGGCAGACAGAAGTGTTAGACGCAGAGAAGATGATCGAAGTCAGTGGGGTAATCACCCATAAGACTCTGCGTCGGTTGATGAGAGGATCGCAACATTTGCCAGAGCCTGCTAAGGCCACCAAAAGACCTCATCAACCCACTCCGTCACCTAAAGTGTCGCCAAAGCCGCAAACGCAGAAGAAGGGGAAGTCATCCAAACTAAAACGCAAGACTGTGGCAAGTCCTTATCCCACCATTAGACCTTCCCCTTCCTCAAGTCCTTCACCTCCACTCCCATTAACTGCAAGAGAGCCAACGCCTCCTCCACCTTCTCCTGAGATGTAA

Coding sequence (CDS)

ATGTCAAGGGATCGGGTGATGGTAGCTTATTGCATTATGCGTCGCATCCCCCTTGATGTCGAATGCATAATTGCAACGCAGATAAGAGGGGTCTTCAACAAACCAAGAGGCCAACTCTTTTTCCCCTCACTTATCATGAACCTATACGCTAATGCTACCATCGGAGGGCAGACAGAAGTGTTAGACGCAGAGAAGATGATCGAAGTCAGTGGGGTAATCACCCATAAGACTCTGCGTCGGTTGATGAGAGGATCGCAACATTTGCCAGAGCCTGCTAAGGCCACCAAAAGACCTCATCAACCCACTCCGTCACCTAAAGTGTCGCCAAAGCCGCAAACGCAGAAGAAGGGGAAGTCATCCAAACTAAAACGCAAGACTGTGGCAAGTCCTTATCCCACCATTAGACCTTCCCCTTCCTCAAGTCCTTCACCTCCACTCCCATTAACTGCAAGAGAGCCAACGCCTCCTCCACCTTCTCCTGAGATGTAA

Protein sequence

MSRDRVMVAYCIMRRIPLDVECIIATQIRGVFNKPRGQLFFPSLIMNLYANATIGGQTEVLDAEKMIEVSGVITHKTLRRLMRGSQHLPEPAKATKRPHQPTPSPKVSPKPQTQKKGKSSKLKRKTVASPYPTIRPSPSSSPSPPLPLTAREPTPPPPSPEM
Homology
[Close]
BLAST of Cla001201 vs. TrEMBL
Match: A0A0M8T4V9_9ACTN (ECF subfamily RNA polymerase sigma-24 subunit OS=Streptomyces sp. MMG1522 GN=ADK56_22910 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.0e-06
Identity = 33/74 (44.59%), Postives = 42/74 (56.76%), Query Frame = 1 

Query: 89  PEPAKATKRPHQPTPSPKVSPKPQTQKKGKSSKLKRKTVASPYPTIRPSPSSSPSPPLPL 148
           PEPA +   P +PTPSP  SP+P  +             A P PT  PSPS +P+PP P 
Sbjct: 469 PEPAPSEPAP-EPTPSPTPSPEPPPEP------------APPAPTPPPSPSPTPTPPPP- 526

Query: 149 TAREPTPPPPSPEM 163
              +PTPPPP+PE+
Sbjct: 529 --SKPTPPPPAPEV 526

[Close]
BLAST of Cla001201 vs. TAIR10
Match: AT3G50580.1 (AT3G50580.1 LOCATED IN: endomembrane system)

HSP 1 Score: 50.8 bits (120), Expect = 9.0e-07
Identity = 29/69 (42.03%), Postives = 35/69 (50.72%), Query Frame = 1 

Query: 98  PHQPTPSPKVSPKPQTQKKGKSSKLKRKTVASPYPTIRPSPSSSPSPPLPLTAREPTP-- 157
           P  P P+PK SP P T KK  S       V  P+PT + SPS  P+P LP  A + +P  
Sbjct: 88  PSPPPPAPKKSPPPPTPKKSPSPPSLTPFV--PHPTPKKSPSPPPTPSLPPPAPKKSPST 147

Query: 158 ---PPPSPE 162
              PPP+P+
Sbjct: 148 PSLPPPTPK 154


HSP 2 Score: 36.2 bits (82), Expect = 2.3e-02
Identity = 14/26 (53.85%), Postives = 17/26 (65.38%), Query Frame = 1 

Query: 136 PSPSSSPSPPLPLTAREPTPPPPSPE 162
           P+ S SPS P+P T   P+PPPP+P+
Sbjct: 71  PAISISPSTPIPSTPSTPSPPPPAPK 96


HSP 3 Score: 30.0 bits (66), Expect = 1.6e+00
Identity = 15/35 (42.86%), Postives = 21/35 (60.00%), Query Frame = 1 

Query: 127 VASPYPTIRPSPSSSPSPPLPLTAREPTPPPPSPE 162
           ++    T  PS  S+PSPP P  A + +PPPP+P+
Sbjct: 73  ISISPSTPIPSTPSTPSPPPP--APKKSPPPPTPK 105

[Close]
BLAST of Cla001201 vs. TAIR10
Match: AT1G44191.1 (AT1G44191.1 ECA1 gametogenesis related family protein)

HSP 1 Score: 47.4 bits (111), Expect = 9.9e-06
Identity = 31/91 (34.07%), Postives = 39/91 (42.86%), Query Frame = 1 

Query: 89  PEPAKATKRPHQPT------PSPKVSPKPQTQKK-------GKSSKLKRKTVASPYPTI- 148
           P+P   + RP  P       PSPK SP P+T KK            + +K+   P P+  
Sbjct: 82  PKPPTPSSRPPSPLSPKKSPPSPKPSPPPRTPKKSPPPPKPSSPPPIPKKSPPPPKPSSP 141

Query: 149 RPSPSSSPSPPLPLT-----AREPTPPPPSP 161
            P+P  SP PP P +      + P PP PSP
Sbjct: 142 PPTPKKSPPPPKPSSPPPSPKKSPPPPKPSP 172


HSP 2 Score: 42.7 bits (99), Expect = 2.4e-04
Identity = 24/73 (32.88%), Postives = 30/73 (41.10%), Query Frame = 1 

Query: 89  PEPAKATKRPHQPTPSPKVSPKPQTQKKGKSSKLKRKTVASPYPTIRPSPSS-SPSPPLP 148
           P+P+ +  +P  P P+PK SP P    +               P  +PSP    PSPP P
Sbjct: 208 PKPSPSPPKPSTPPPTPKKSPPPPKPSQ---------------PPPKPSPPRRKPSPPTP 265

Query: 149 LTAREPTPPPPSP 161
             +  P  P PSP
Sbjct: 268 KPSTTPPSPKPSP 265

[Close]
BLAST of Cla001201 vs. NCBI nr
Match: gi|926287663|ref|WP_053624550.1| (RNA polymerase subunit sigma-24 [Streptomyces sp. NRRL F-2295])

HSP 1 Score: 59.3 bits (142), Expect = 7.2e-06
Identity = 33/74 (44.59%), Postives = 42/74 (56.76%), Query Frame = 1 

Query: 89  PEPAKATKRPHQPTPSPKVSPKPQTQKKGKSSKLKRKTVASPYPTIRPSPSSSPSPPLPL 148
           PEPA +   P +PTPSP  SP+P  +             A P PT  PSPS +P+PP P 
Sbjct: 471 PEPAPSEPAP-EPTPSPTPSPEPPPEP------------APPAPTPPPSPSPTPTPPPP- 528

Query: 149 TAREPTPPPPSPEM 163
              +PTPPPP+PE+
Sbjct: 531 --SKPTPPPPAPEV 528

[Close]
BLAST of Cla001201 vs. NCBI nr
Match: gi|695836974|ref|WP_032750351.1| (ECF subfamily RNA polymerase sigma-24 subunit [Streptomyces sp. NRRL F-5702])

HSP 1 Score: 59.3 bits (142), Expect = 7.2e-06
Identity = 33/74 (44.59%), Postives = 42/74 (56.76%), Query Frame = 1 

Query: 89  PEPAKATKRPHQPTPSPKVSPKPQTQKKGKSSKLKRKTVASPYPTIRPSPSSSPSPPLPL 148
           PEPA +   P +PTPSP  SP+P  +             A P PT  PSPS +P+PP P 
Sbjct: 458 PEPAPSEPAP-EPTPSPTPSPEPPPEP------------APPAPTPPPSPSPTPTPPPP- 515

Query: 149 TAREPTPPPPSPEM 163
              +PTPPPP+PE+
Sbjct: 518 --SKPTPPPPAPEV 515

[Close]
BLAST of Cla001201 vs. NCBI nr
Match: gi|663297256|ref|WP_030298099.1| (MULTISPECIES: ECF subfamily RNA polymerase sigma-24 subunit [Streptomyces])

HSP 1 Score: 59.3 bits (142), Expect = 7.2e-06
Identity = 33/74 (44.59%), Postives = 42/74 (56.76%), Query Frame = 1 

Query: 89  PEPAKATKRPHQPTPSPKVSPKPQTQKKGKSSKLKRKTVASPYPTIRPSPSSSPSPPLPL 148
           PEPA +   P +PTPSP  SP+P  +             A P PT  PSPS +P+PP P 
Sbjct: 469 PEPAPSEPAP-EPTPSPTPSPEPPPEP------------APPAPTPPPSPSPTPTPPPP- 526

Query: 149 TAREPTPPPPSPEM 163
              +PTPPPP+PE+
Sbjct: 529 --SKPTPPPPAPEV 526

The following BLAST results are available for this feature:
BLAST of Cla001201 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0M8T4V9_9ACTN5.0e-0644.59ECF subfamily RNA polymerase sigma-24 subunit OS=Streptomyces sp. MMG1522 GN=ADK... [more]
BLAST of Cla001201 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G50580.19.0e-0742.03 LOCATED IN: endomembrane system[more]
AT1G44191.19.9e-0634.07 ECA1 gametogenesis related family protein[more]
BLAST of Cla001201 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|926287663|ref|WP_053624550.1|7.2e-0644.59RNA polymerase subunit sigma-24 [Streptomyces sp. NRRL F-2295][more]
gi|695836974|ref|WP_032750351.1|7.2e-0644.59ECF subfamily RNA polymerase sigma-24 subunit [Streptomyces sp. NRRL F-5702][more]
gi|663297256|ref|WP_030298099.1|7.2e-0644.59MULTISPECIES: ECF subfamily RNA polymerase sigma-24 subunit [Streptomyces][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla001201Cla001201gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla001201Cla001201.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla001201.1.cds1Cla001201.1.cds1CDS