Cla000675.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla000675
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr0 : 15685305 .. 15687454 (-)
Sequence length	222

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCCTGTTCCAGTTACTTCCAACTGGAAATGTGAAAATTGTAAGTAATAATCTAATGATTGCTTCTCTATGAGTGTATGTAATGCATTATAACTTGTTTGAAAATAAAACGTTTATCTATTAAAATTATAGGAAGAACTGTCCAAAGATTGTGTTGACTATAAAGGTTATTCAGATGATATATTGACACAAGCATTGGGAACACCTGAACACCGAGGACGGGTAAGAGGTGTAAGGGGCTTGGTTACACCTTCATTATACTTTCACAAACACATCCCAACAGAATCCACACAAACTTCAAAGAATGACGATCCAGAGACAAGTTGGAAAAAGGAGAAAGTACTGATTTTGGATCAATATAATTTAATGGTTAAACGTATGCATAAGTTAAATTCTCGAATGAAGGTCGAGCAAACACGTTCGGTTGCACATGATCAACAAATCATATCATTGCCCACATATGAGGAAAAAATAGATTAGGTAAAAATTATATTTACATAATTAATAAGTTATTTTGTCGATGGATTATTTGACATTGATAATAGATTGACCGTTTGAATGTACATTTTAGGGGAGACCTTGTAGTCTTGCTGTTGGAAGTGTTGATAAAATTGTGGCAGCAGGTACTGTTTTCAAGAGACAATGGTCTAATGAAGTAGTTTATGGGGTAACACTTGGGGTGAACGATGTGCGAGCTCTCATTGAAGTTGTGGAGGACACCAACTCCACATTACCCATACCTGTTGTTGGAAGTATTTATAGGGTTTCTGATGCAATTGGATCGTATGTTCCATGGCCAAATCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATGGAGGAATTGGCACTCTCAATTATAACGGGTTATATCGCGTATGTACAATTAACTAATCTGATTAGTATTAATGATTTATTGTAACATTTCTAATATTAACAGTTTTTTTTTCTTTTTTTTTTATGATCTTAGATGTTTGGTAGCAGCCGACCCAAGTATATTAGAGGATTATGCATTTATTCATCCTGCGCAGATTTCAAGTGACTCAGGCATCGATGAACAACGTTCTACATTCTTATGCAACAGGTTGACCTCAACAAAGAATGAGTTGTTGATATGTCAGTATAATCCTGGGTAAGTTTAGAAAAATGATCAGTTTAATAATTTTTTATTGATAAACATTGATTTATCTTAATTTTTTGAGTTACTTCTTTTATGTAGATATCATTGGATGGTAGTTGTCATCAATCTACGGAGTAATACAGTGTATTCAGTTGACTCCATAGGACTTGGTGTTCGTGAAGATGTGAAAACTATTGTCAATACGTAAGTAATTAAAAGTATTTCACATTATGTATATTCATTATGTTAACAATCTAATATAATTGTGCGTTTGTTTTGTTTAGGGCCATGAGAATGTTTTATGCTCGGACAAGTACACGATCCAGACCTGTTATATGGGTACCCGTTAAGGTAAGCATTTCAATTTCGATGTAATAATATTATATTTTAGATTACAAGATTTGGTTTATTCTAACATGGGTTGAAATATATGTGTACATATATAGTGTGCTAAACAACTGGGCAGCACGGAATGTGGGTATTATACTCTGAAGTTTATACACGACATAGTAACTCAGAGGAGCACAACAGTTACAGACGTGGTATGCATTTGCTTAAACCATATTGTTTAACTATAGTTATTACACTTAATATCATTGTTTTTAATCAATCTAATATGGTTTGTTTACTTGCAGTTGACGAGACAAACACAATATAGTCAATTGGAATTAGACACAATTAGAGTTGACTATTGTGACTTTATAGGACGTTATATTTGA

mRNA sequence

ATGCTCCTGTTCCAGTTACTTCCAACTGGAAATGTGAAAATTTGTGCTAAACAACTGGGCAGCACGGAATGTGGGTATTATACTCTGAAGTTTATACACGACATAGTAACTCAGAGGAGCACAACAGTTACAGACGTGTTGACGAGACAAACACAATATAGTCAATTGGAATTAGACACAATTAGAGTTGACTATTGTGACTTTATAGGACGTTATATTTGA

Coding sequence (CDS)

ATGCTCCTGTTCCAGTTACTTCCAACTGGAAATGTGAAAATTTGTGCTAAACAACTGGGCAGCACGGAATGTGGGTATTATACTCTGAAGTTTATACACGACATAGTAACTCAGAGGAGCACAACAGTTACAGACGTGTTGACGAGACAAACACAATATAGTCAATTGGAATTAGACACAATTAGAGTTGACTATTGTGACTTTATAGGACGTTATATTTGA

Protein sequence

MLLFQLLPTGNVKICAKQLGSTECGYYTLKFIHDIVTQRSTTVTDVLTRQTQYSQLELDTIRVDYCDFIGRYI

Homology

[Close]

BLAST of Cla000675 vs. TrEMBL
Match: E5GBQ2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.0e-07
Identity = 26/59 (44.07%), Postives = 41/59 (69.49%), Query Frame = 1


Query: 15 CAKQLGSTECGYYTLKFIHDIVTQRSTTVTDVLTRQTQYSQLELDTIRVDYCDFIGRYI 74
          C  Q+G  ECGYY ++++ DI+T  S  VT ++  +T YSQLELD +RV+  +F+G ++
Sbjct: 29 CHLQVGVVECGYYVMRYMRDIITNGSIVVTYLIDTRTSYSQLELDEVRVELVNFLGGHM 87

[Close]

BLAST of Cla000675 vs. NCBI nr
Match: gi|307136042|gb|ADN33894.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 62.8 bits (151), Expect = 2.9e-07
Identity = 26/59 (44.07%), Postives = 41/59 (69.49%), Query Frame = 1


Query: 15 CAKQLGSTECGYYTLKFIHDIVTQRSTTVTDVLTRQTQYSQLELDTIRVDYCDFIGRYI 74
          C  Q+G  ECGYY ++++ DI+T  S  VT ++  +T YSQLELD +RV+  +F+G ++
Sbjct: 29 CHLQVGVVECGYYVMRYMRDIITNGSIVVTYLIDTRTSYSQLELDEVRVELVNFLGGHM 87

[Close]

BLAST of Cla000675 vs. NCBI nr
Match: gi|778691222|ref|XP_011653243.1| (PREDICTED: uncharacterized protein LOC101213947 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 5.5e-06
Identity = 21/59 (35.59%), Postives = 39/59 (66.10%), Query Frame = 1


Query: 15  CAKQLGSTECGYYTLKFIHDIVTQRSTTVTDVLTRQTQYSQLELDTIRVDYCDFIGRYI 74
           C + LGS ECGYY  K++ ++V   ++ ++D+      Y Q E+D +RV++ +F+GR++
Sbjct: 655 CPRPLGSIECGYYVQKYLRELVKNSNSHISDLFNTIHTYEQEEIDAVRVEWAEFVGRFV 713

The following BLAST results are available for this feature:

BLAST of Cla000675 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBQ2_CUCME	2.0e-07	44.07	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Cla000675 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136042\|gb\|ADN33894.1\|	2.9e-07	44.07	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|778691222\|ref\|XP_011653243.1\|	5.5e-06	35.59	PREDICTED: uncharacterized protein LOC101213947 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla000675	Cla000675	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla000675	Cla000675.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla000675.1.cds3	Cla000675.1.cds3	CDS
Cla000675.1.cds2	Cla000675.1.cds2	CDS
Cla000675.1.cds1	Cla000675.1.cds1	CDS