Cla000647.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla000647
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr0 : 5653249 .. 5653572 (-)
Sequence length	324

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCGGCTGATTTCAGCTCTTCGCCCCACCCTCCACAACTTCACTAACAGCCACCGCGTCGCTGACGAGAGCATGTTCACTACAACTGATCAATTCCCCATCTACGCCGCCGCCGACCACCACCACCGCCGCCCCTTCTCCGCCGCCATCTTCAGCATCATTCGTGCTCCTTTCTCTATTCTCTCCTGCTTCGCGCCACCCCCGGTTCACCGCTCCGCCGACGCCTTCTGGCTCTCCGGCGACCACTATTTTGCCTCTACTATTTCCGAGACCAACCAGCTTATGGTAAGCGACGGCATGCGTTACGCCATATTGATGTAG

mRNA sequence

ATGTGGCGGCTGATTTCAGCTCTTCGCCCCACCCTCCACAACTTCACTAACAGCCACCGCGTCGCTGACGAGAGCATGTTCACTACAACTGATCAATTCCCCATCTACGCCGCCGCCGACCACCACCACCGCCGCCCCTTCTCCGCCGCCATCTTCAGCATCATTCGTGCTCCTTTCTCTATTCTCTCCTGCTTCGCGCCACCCCCGGTTCACCGCTCCGCCGACGCCTTCTGGCTCTCCGGCGACCACTATTTTGCCTCTACTATTTCCGAGACCAACCAGCTTATGGTAAGCGACGGCATGCGTTACGCCATATTGATGTAG

Coding sequence (CDS)

ATGTGGCGGCTGATTTCAGCTCTTCGCCCCACCCTCCACAACTTCACTAACAGCCACCGCGTCGCTGACGAGAGCATGTTCACTACAACTGATCAATTCCCCATCTACGCCGCCGCCGACCACCACCACCGCCGCCCCTTCTCCGCCGCCATCTTCAGCATCATTCGTGCTCCTTTCTCTATTCTCTCCTGCTTCGCGCCACCCCCGGTTCACCGCTCCGCCGACGCCTTCTGGCTCTCCGGCGACCACTATTTTGCCTCTACTATTTCCGAGACCAACCAGCTTATGGTAAGCGACGGCATGCGTTACGCCATATTGATGTAG

Protein sequence

MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAADHHHRRPFSAAIFSIIRAPFSILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM

Homology

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BLAST of Cla000647 vs. TrEMBL
Match: A0A0A0KFS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G110050 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.4e-43
Identity = 87/107 (81.31%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAADHHHRRPFSAAIFSIIRAPFS 60
           MW++ + +RPTLHNFTNSHR+ADESMFT+TDQFPIYAAA++  RR FS++IF+IIRAPFS
Sbjct: 1   MWQVFALIRPTLHNFTNSHRIADESMFTSTDQFPIYAAANN--RRTFSSSIFNIIRAPFS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           ILSCFAPP VHRS DAFWLSGDHYFASTISE N LMVSDGMRYAILM
Sbjct: 61  ILSCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 105

[Close]

BLAST of Cla000647 vs. TrEMBL
Match: A0A067KF26_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13803 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-17
Identity = 55/113 (48.67%), Postives = 68/113 (60.18%), Query Frame = 1


Query: 1   MWRLISALRPTLHNFTNSHRVADESMF-----TTTDQFPIYAAADHHHRRPFS-AAIFSI 60
           MWR ++ +R  +HN   S RVADESMF         +FPI  A +   R+    +AIF I
Sbjct: 1   MWRSVARIRRNMHNLRKSPRVADESMFGGMNINNGTEFPIIFARETAGRQRIGFSAIFRI 60

Query: 61  IRAPFSILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           + APFS+LSCF+  P     D  W+SG H FA  ISE N LMV+D MRYAILM
Sbjct: 61  VLAPFSLLSCFSSQPHANGVDGLWVSGRHEFAQ-ISEMNHLMVNDSMRYAILM 112

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BLAST of Cla000647 vs. TrEMBL
Match: F6HII7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g02120 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-14
Identity = 51/111 (45.95%), Postives = 68/111 (61.26%), Query Frame = 1


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQ--FPIYAAADHHHRRPFS--AAIFSIIR 60
           MW +++A+R    N   S RVADE+MF   +Q   PI+        R +   +A++SI+R
Sbjct: 1   MWHMLAAMRRNFQNIRKSPRVADENMFGGGNQAELPIFGRDMERRARGWDGFSAVYSIVR 60

Query: 61  APFSILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
            P S+LSCF+ P V+  AD  W+SGD    + ISE N LMVSD MRYAILM
Sbjct: 61  VPLSLLSCFSHPHVN-GADGVWVSGDF---AHISEMNHLMVSDSMRYAILM 107

[Close]

BLAST of Cla000647 vs. TrEMBL
Match: A0A0B2R259_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_038234 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-13
Identity = 46/107 (42.99%), Postives = 65/107 (60.75%), Query Frame = 1


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAADHHHRRPFSAAIFSIIRAPFS 60
           MWRL++A+   L N   S +VADESMF   +   ++   +   R+     + SI++AP S
Sbjct: 1   MWRLLAAVARNLQNTRKSSKVADESMFEAGNGVELFGH-ERGRRQHGWGLVCSILQAPIS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           ILSC + P V+  +D  W++G+    S +SE N LMVSD MRYAILM
Sbjct: 61  ILSCVSQPQVNNGSDGVWVTGEF---SQVSEMNHLMVSDSMRYAILM 103

[Close]

BLAST of Cla000647 vs. TrEMBL
Match: A0A118K0Z8_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_019653 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.1e-13
Identity = 49/111 (44.14%), Postives = 70/111 (63.06%), Query Frame = 1


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTD--QFPIYAAADHHHRRPFSAA--IFSIIR 60
           M R+++++R  +     S +VADE+MF   +  +FP+ A   H  R+ ++    I+SIIR
Sbjct: 1   MMRVLASMRHNIKKMRKSTKVADENMFGEGNGVEFPVIA---HRTRQGWNGLSFIYSIIR 60

Query: 61  APFSILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           AP S+LSC +  P H +AD  W+SG+    + ISE N LMVSD MRYAILM
Sbjct: 61  APISLLSCLSSHPPHAAADGVWVSGEF---ARISEINHLMVSDSMRYAILM 105

[Close]

BLAST of Cla000647 vs. TAIR10
Match: AT5G35732.1 (AT5G35732.1 unknown protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-13
Identity = 46/107 (42.99%), Postives = 59/107 (55.14%), Query Frame = 1


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAADHHHRRPFSAAIFSIIRAPFS 60
           M +++S LR  L N   S RVAD++   ++          +  R  F++ I   +R PFS
Sbjct: 1   MTQMLSVLRRNLQNLRKSPRVADDTELPSSTSGAGPGVVANGRRDGFNSVI---MRFPFS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           I+SCFA P V    D  W+SGD+    +ISE N LMVSD MRYAILM
Sbjct: 61  IISCFAVPRVS-GTDGLWVSGDY---GSISEVNHLMVSDSMRYAILM 100

[Close]

BLAST of Cla000647 vs. TAIR10
Match: AT2G04795.1 (AT2G04795.1 unknown protein)

HSP 1 Score: 71.2 bits (173), Expect = 4.2e-13
Identity = 46/107 (42.99%), Postives = 57/107 (53.27%), Query Frame = 1


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAADHHHRRPFSAAIFSIIRAPFS 60
           M +++S LR  L N   S RVADES   +T         DH      +  I   ++ P S
Sbjct: 1   MLKMLSILRRNLQNLRKSPRVADESALPSTT-----VNGDHGGGNGSNGGI---MKFPLS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           I+SCF+ P V R AD  W+SGD+     +SE N LMV DGMRYA+LM
Sbjct: 61  IMSCFSVPRVSR-ADGVWVSGDY---GRVSEVNHLMVCDGMRYALLM 95

[Close]

BLAST of Cla000647 vs. NCBI nr
Match: gi|659111908|ref|XP_008455967.1| (PREDICTED: uncharacterized protein LOC103496030 [Cucumis melo])

HSP 1 Score: 183.0 bits (463), Expect = 2.8e-43
Identity = 88/107 (82.24%), Postives = 96/107 (89.72%), Query Frame = 1


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAADHHHRRPFSAAIFSIIRAPFS 60
           MWR+ + +RPTLHNFTN+HR+ADESMFTTTDQFP YAAA ++ RR FS AIF+IIRAPFS
Sbjct: 1   MWRVFAVIRPTLHNFTNTHRIADESMFTTTDQFPTYAAAANN-RRTFSTAIFNIIRAPFS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           ILSCFAPP VHRS DAFWLSGDHYFASTISE N LMVSDGMRYAILM
Sbjct: 61  ILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 106

[Close]

BLAST of Cla000647 vs. NCBI nr
Match: gi|778712310|ref|XP_011656875.1| (PREDICTED: uncharacterized protein LOC105435779 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 4.8e-43
Identity = 87/107 (81.31%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTTTDQFPIYAAADHHHRRPFSAAIFSIIRAPFS 60
           MW++ + +RPTLHNFTNSHR+ADESMFT+TDQFPIYAAA++  RR FS++IF+IIRAPFS
Sbjct: 1   MWQVFALIRPTLHNFTNSHRIADESMFTSTDQFPIYAAANN--RRTFSSSIFNIIRAPFS 60

Query: 61  ILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           ILSCFAPP VHRS DAFWLSGDHYFASTISE N LMVSDGMRYAILM
Sbjct: 61  ILSCFAPPAVHRSPDAFWLSGDHYFASTISEINHLMVSDGMRYAILM 105

[Close]

BLAST of Cla000647 vs. NCBI nr
Match: gi|802658798|ref|XP_012080701.1| (PREDICTED: uncharacterized protein LOC105640903 [Jatropha curcas])

HSP 1 Score: 96.7 bits (239), Expect = 2.7e-17
Identity = 55/113 (48.67%), Postives = 68/113 (60.18%), Query Frame = 1


Query: 1   MWRLISALRPTLHNFTNSHRVADESMF-----TTTDQFPIYAAADHHHRRPFS-AAIFSI 60
           MWR ++ +R  +HN   S RVADESMF         +FPI  A +   R+    +AIF I
Sbjct: 1   MWRSVARIRRNMHNLRKSPRVADESMFGGMNINNGTEFPIIFARETAGRQRIGFSAIFRI 60

Query: 61  IRAPFSILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMRYAILM 108
           + APFS+LSCF+  P     D  W+SG H FA  ISE N LMV+D MRYAILM
Sbjct: 61  VLAPFSLLSCFSSQPHANGVDGLWVSGRHEFAQ-ISEMNHLMVNDSMRYAILM 112

[Close]

BLAST of Cla000647 vs. NCBI nr
Match: gi|657979642|ref|XP_008381793.1| (PREDICTED: uncharacterized protein LOC103444614 [Malus domestica])

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-15
Identity = 54/125 (43.20%), Postives = 71/125 (56.80%), Query Frame = 1


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTT------TDQFPIYAAA-DHHH--RRP----- 60
           MW +++ +R  LHN   S RVADESM           + PI+ A  DHHH  RR      
Sbjct: 1   MWSMLATMRQNLHNIRKSPRVADESMVNVGAGNPAPAELPIFPAHHDHHHVDRRSLPRIR 60

Query: 61  ----FSAAIFSIIRAPFSILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMR 108
               F++ ++S++  PFS++SCF+ P     AD  W SG+    S I+E NQLMVSD MR
Sbjct: 61  WIKGFNSLLYSVVLVPFSVISCFSQPHHVHGADGVWASGEF---SQITEMNQLMVSDSMR 120

[Close]

BLAST of Cla000647 vs. NCBI nr
Match: gi|694377806|ref|XP_009365182.1| (PREDICTED: uncharacterized protein LOC103955039 [Pyrus x bretschneideri])

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-15
Identity = 54/125 (43.20%), Postives = 71/125 (56.80%), Query Frame = 1


Query: 1   MWRLISALRPTLHNFTNSHRVADESMFTT------TDQFPIYAAA-DHHH--RRP----- 60
           MW +++ +R  LHN   S RVADESM           + PI+ A  DHHH  RR      
Sbjct: 1   MWSMLTTMRQNLHNIRKSPRVADESMVNVGAGNPAPAELPIFPAHHDHHHVDRRSLLRIR 60

Query: 61  ----FSAAIFSIIRAPFSILSCFAPPPVHRSADAFWLSGDHYFASTISETNQLMVSDGMR 108
               F++ ++S++  PFS++SCF+ P     AD  W SG+    S I+E NQLMVSD MR
Sbjct: 61  WIKGFNSLLYSVVLVPFSVISCFSQPHHVHGADGVWASGEF---SQITEMNQLMVSDSMR 120

The following BLAST results are available for this feature:

BLAST of Cla000647 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFS1_CUCSA	3.4e-43	81.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G110050 PE=4 SV=1	[more]
A0A067KF26_JATCU	1.9e-17	48.67	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13803 PE=4 SV=1	[more]
F6HII7_VITVI	1.5e-14	45.95	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g02120 PE=4 SV=...	[more]
A0A0B2R259_GLYSO	1.6e-13	42.99	Uncharacterized protein OS=Glycine soja GN=glysoja_038234 PE=4 SV=1	[more]
A0A118K0Z8_CYNCS	2.1e-13	44.14	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_019653 PE=4 ...	[more]

BLAST of Cla000647 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G35732.1	1.1e-13	42.99	unknown protein	[more]
AT2G04795.1	4.2e-13	42.99	unknown protein	[more]

BLAST of Cla000647 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111908\|ref\|XP_008455967.1\|	2.8e-43	82.24	PREDICTED: uncharacterized protein LOC103496030 [Cucumis melo]	[more]
gi\|778712310\|ref\|XP_011656875.1\|	4.8e-43	81.31	PREDICTED: uncharacterized protein LOC105435779 [Cucumis sativus]	[more]
gi\|802658798\|ref\|XP_012080701.1\|	2.7e-17	48.67	PREDICTED: uncharacterized protein LOC105640903 [Jatropha curcas]	[more]
gi\|657979642\|ref\|XP_008381793.1\|	1.5e-15	43.20	PREDICTED: uncharacterized protein LOC103444614 [Malus domestica]	[more]
gi\|694377806\|ref\|XP_009365182.1\|	1.5e-15	43.20	PREDICTED: uncharacterized protein LOC103955039 [Pyrus x bretschneideri]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla000647	Cla000647	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla000647	Cla000647.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla000647.1.cds1	Cla000647.1.cds1	CDS