Cla000524.1 (mRNA) Watermelon (97103) v1

Overview
NameCla000524
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
Description60S ribosomal protein L35a (AHRD V1 *-*- B6VC50_VERFO); contains Interpro domain(s) IPR001780 Ribosomal protein L35Ae
LocationChr0 : 12698115 .. 12698405 (+)
Sequence length291
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAGGGAAGGCAAGGAGAAAGAGTCAAACTCTACATTAGAGGAATGGTCCTTAGGTACAAGAGGTCAAAGTCAAACCAGTATCCAAGAACATCACTAATCCAAATTGGAGGGGTGAACACCAGGGAAGAGGTCGCATGGTACGTTGGAAAGTGCTTGGCGTTCACAAGAAGCAAAATGAAACTCACTACAGATGCATTTGGGGCAAGGTTTGCAAGCTTCATGGTAACAGTGGCAATATTCGAGCTAAGTTCAAGTCAAACTTTTGCCCCCAAAGTCCATGGGTGA

mRNA sequence

ATGGTGAAGGGAAGGCAAGGAGAAAGAGTCAAACTCTACATTAGAGGAATGGTCCTTAGGTACAAGAGGTCAAAGTCAAACCAGTATCCAAGAACATCACTAATCCAAATTGGAGGGGTGAACACCAGGGAAGAGGTCGCATGGTACGTTGGAAAGTGCTTGGCGTTCACAAGAAGCAAAATGAAACTCACTACAGATGCATTTGGGGCAAGGTTTGCAAGCTTCATGGTAACAGTGGCAATATTCGAGCTAAGTTCAAGTCAAACTTTTGCCCCCAAAGTCCATGGGTGA

Coding sequence (CDS)

ATGGTGAAGGGAAGGCAAGGAGAAAGAGTCAAACTCTACATTAGAGGAATGGTCCTTAGGTACAAGAGGTCAAAGTCAAACCAGTATCCAAGAACATCACTAATCCAAATTGGAGGGGTGAACACCAGGGAAGAGGTCGCATGGTACGTTGGAAAGTGCTTGGCGTTCACAAGAAGCAAAATGAAACTCACTACAGATGCATTTGGGGCAAGGTTTGCAAGCTTCATGGTAACAGTGGCAATATTCGAGCTAAGTTCAAGTCAAACTTTTGCCCCCAAAGTCCATGGGTGA

Protein sequence

MVKGRQGERVKLYIRGMVLRYKRSKSNQYPRTSLIQIGGVNTREEVAWYVGKCLAFTRSKMKLTTDAFGARFASFMVTVAIFELSSSQTFAPKVHG
Homology
[Close]
BLAST of Cla000524 vs. Swiss-Prot
Match: R35A1_ARATH (60S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.8e-18
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 1 

Query: 1  MVKGRQGERVKLYIRGMVLRYKRSKSNQYPRTSLIQIGGVNTREEVAWYVGKCLAF 57
          MVKGRQGERV+LY+RG +L YKRSKSNQYP TSL+Q+ GVNT EEV+WY GK +A+
Sbjct: 1  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAY 56

[Close]
BLAST of Cla000524 vs. Swiss-Prot
Match: R35A3_ARATH (60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.8e-18
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 1 

Query: 1  MVKGRQGERVKLYIRGMVLRYKRSKSNQYPRTSLIQIGGVNTREEVAWYVGKCLAF 57
          MVKGRQGERV+LY+RG +L YKRSKSNQYP TSL+QI GVNT+EEV WY GK +A+
Sbjct: 1  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAY 56

[Close]
BLAST of Cla000524 vs. Swiss-Prot
Match: R35A2_ARATH (60S ribosomal protein L35a-2 OS=Arabidopsis thaliana GN=RPL35AB PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-17
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 1 

Query: 2  VKGRQGERVKLYIRGMVLRYKRSKSNQYPRTSLIQIGGVNTREEVAWYVGKCLAF 57
          +KGRQGERV+LY+RG VL YKRSKSNQYP TSLIQI GVNT+EEV WY GK LA+
Sbjct: 1  MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAY 55

[Close]
BLAST of Cla000524 vs. Swiss-Prot
Match: R35A4_ARATH (60S ribosomal protein L35a-4 OS=Arabidopsis thaliana GN=RPL35AD PE=3 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-17
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = 1 

Query: 2  VKGRQGERVKLYIRGMVLRYKRSKSNQYPRTSLIQIGGVNTREEVAWYVGKCLAF 57
          +KGRQGERV+LY+RG VL YKRSKSNQYP TSL+QI GVNT+EEV WY GK LA+
Sbjct: 1  MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAY 55

[Close]
BLAST of Cla000524 vs. Swiss-Prot
Match: RL35A_DICDI (60S ribosomal protein L35a OS=Dictyostelium discoideum GN=rpl35a PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.2e-06
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 1 

Query: 11 KLYIRGMVLRYKRSKSNQYPRTSLIQIGGVNTREEVAWYVGK--CLAFTRSK 61
          K+Y +G+VL Y+RS++ QYP  SLI+I GV +RE+  +Y+GK  CL    SK
Sbjct: 3  KIYSKGVVLGYRRSQATQYPNISLIKIEGVVSREDSTFYLGKKVCLVSKVSK 54

[Close]
BLAST of Cla000524 vs. TrEMBL
Match: A0A022QFA1_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016658mg PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 1 

Query: 1  MVKGRQGERVKLYIRGMVLRYKRSKSNQYPRTSLIQIGGVNTREEVAWYVGKCLAFT-RS 60
          MVKGRQGERV+LY+RG VL YKRSKSNQYP TSLIQI GVNT+EEVAWY+GK LA+  ++
Sbjct: 1  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVAWYLGKRLAYIYKA 60

Query: 61 KMK 63
          K+K
Sbjct: 61 KVK 63

[Close]
BLAST of Cla000524 vs. TrEMBL
Match: A0A022RPU6_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015450mg PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.2e-17
Identity = 47/63 (74.60%), Postives = 56/63 (88.89%), Query Frame = 1 

Query: 1   MVKGRQGERVKLYIRGMVLRYKRSKSNQYPRTSLIQIGGVNTREEVAWYVGKCLAFT-RS 60
           MVKGRQGERV+LY+RG VL YKRSKSNQYP TSLIQI GVNT+EEVAWY+GK +A+  ++
Sbjct: 46  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVAWYLGKKMAYIYKA 105

Query: 61  KMK 63
           K+K
Sbjct: 106 KVK 108

[Close]
BLAST of Cla000524 vs. TrEMBL
Match: A0A068V006_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00039165001 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.2e-17
Identity = 46/63 (73.02%), Postives = 56/63 (88.89%), Query Frame = 1 

Query: 1  MVKGRQGERVKLYIRGMVLRYKRSKSNQYPRTSLIQIGGVNTREEVAWYVGKCLAFT-RS 60
          MVKGRQGERV+LY+RG +L YKRSKSNQYP TSLIQI GVNT+EEVAWY+GK +A+  ++
Sbjct: 1  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYLGKKMAYIYKA 60

Query: 61 KMK 63
          K+K
Sbjct: 61 KVK 63

[Close]
BLAST of Cla000524 vs. TrEMBL
Match: A9PB30_POPTR (Ribosomal protein L33 OS=Populus trichocarpa GN=POPTR_0008s06370g PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.2e-17
Identity = 47/63 (74.60%), Postives = 55/63 (87.30%), Query Frame = 1 

Query: 1  MVKGRQGERVKLYIRGMVLRYKRSKSNQYPRTSLIQIGGVNTREEVAWYVGKCLAFT-RS 60
          MVKGRQGERV+LY+RG VL YKRSKSNQYP TSLIQI GVNT+EEVAWY GK +A+  ++
Sbjct: 1  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYAGKRMAYIYKA 60

Query: 61 KMK 63
          K+K
Sbjct: 61 KVK 63

[Close]
BLAST of Cla000524 vs. TrEMBL
Match: A0A067LKI6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01339 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.2e-17
Identity = 47/63 (74.60%), Postives = 55/63 (87.30%), Query Frame = 1 

Query: 1  MVKGRQGERVKLYIRGMVLRYKRSKSNQYPRTSLIQIGGVNTREEVAWYVGKCLAFT-RS 60
          MVKGRQGERV+LY+RG VL YKRSKSNQYP TSLIQI GVNT+EEVAWY GK +A+  ++
Sbjct: 1  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYAGKRMAYIYKA 60

Query: 61 KMK 63
          K+K
Sbjct: 61 KVK 63

[Close]
BLAST of Cla000524 vs. TAIR10
Match: AT1G07070.1 (AT1G07070.1 Ribosomal protein L35Ae family protein)

HSP 1 Score: 91.7 bits (226), Expect = 2.7e-19
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 1 

Query: 1  MVKGRQGERVKLYIRGMVLRYKRSKSNQYPRTSLIQIGGVNTREEVAWYVGKCLAF 57
          MVKGRQGERV+LY+RG +L YKRSKSNQYP TSL+Q+ GVNT EEV+WY GK +A+
Sbjct: 1  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAY 56

[Close]
BLAST of Cla000524 vs. TAIR10
Match: AT1G74270.1 (AT1G74270.1 Ribosomal protein L35Ae family protein)

HSP 1 Score: 91.7 bits (226), Expect = 2.7e-19
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 1 

Query: 1  MVKGRQGERVKLYIRGMVLRYKRSKSNQYPRTSLIQIGGVNTREEVAWYVGKCLAF 57
          MVKGRQGERV+LY+RG +L YKRSKSNQYP TSL+QI GVNT+EEV WY GK +A+
Sbjct: 1  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAY 56

[Close]
BLAST of Cla000524 vs. TAIR10
Match: AT1G41880.1 (AT1G41880.1 Ribosomal protein L35Ae family protein)

HSP 1 Score: 90.1 bits (222), Expect = 7.9e-19
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 1 

Query: 2  VKGRQGERVKLYIRGMVLRYKRSKSNQYPRTSLIQIGGVNTREEVAWYVGKCLAF 57
          +KGRQGERV+LY+RG VL YKRSKSNQYP TSLIQI GVNT+EEV WY GK LA+
Sbjct: 1  MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAY 55

[Close]
BLAST of Cla000524 vs. TAIR10
Match: AT3G55750.1 (AT3G55750.1 Ribosomal protein L35Ae family protein)

HSP 1 Score: 89.7 bits (221), Expect = 1.0e-18
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = 1 

Query: 2  VKGRQGERVKLYIRGMVLRYKRSKSNQYPRTSLIQIGGVNTREEVAWYVGKCLAF 57
          +KGRQGERV+LY+RG VL YKRSKSNQYP TSL+QI GVNT+EEV WY GK LA+
Sbjct: 1  MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAY 55

[Close]
BLAST of Cla000524 vs. NCBI nr
Match: gi|778695048|ref|XP_011653915.1| (PREDICTED: 60S ribosomal protein L35a-1-like [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 2.8e-18
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 1 

Query: 1  MVKGRQGERVKLYIRGMVLRYKRSKSNQYPRTSLIQIGGVNTREEVAWYVGKCLAFT-RS 60
          MVKGRQGER++LY+RG VL YKRSKSNQYPRTSLIQI GVNTREEVAWY GK LA+  ++
Sbjct: 1  MVKGRQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKA 60

Query: 61 KMK 63
          K+K
Sbjct: 61 KVK 63

[Close]
BLAST of Cla000524 vs. NCBI nr
Match: gi|659083091|ref|XP_008442180.1| (PREDICTED: 60S ribosomal protein L35a-1-like [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-17
Identity = 48/63 (76.19%), Postives = 55/63 (87.30%), Query Frame = 1 

Query: 1  MVKGRQGERVKLYIRGMVLRYKRSKSNQYPRTSLIQIGGVNTREEVAWYVGKCLAFT-RS 60
          MVKG QGER++LY+RG VL YKRSKSNQYPRTSLIQI GVNTREEVAWY GK LA+  ++
Sbjct: 1  MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKA 60

Query: 61 KMK 63
          K+K
Sbjct: 61 KVK 63

[Close]
BLAST of Cla000524 vs. NCBI nr
Match: gi|848900481|ref|XP_012850403.1| (PREDICTED: 60S ribosomal protein L35a-3-like [Erythranthe guttata])

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-17
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 1 

Query: 1  MVKGRQGERVKLYIRGMVLRYKRSKSNQYPRTSLIQIGGVNTREEVAWYVGKCLAFT-RS 60
          MVKGRQGERV+LY+RG VL YKRSKSNQYP TSLIQI GVNT+EEVAWY+GK LA+  ++
Sbjct: 1  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVAWYLGKRLAYIYKA 60

Query: 61 KMK 63
          K+K
Sbjct: 61 KVK 63

[Close]
BLAST of Cla000524 vs. NCBI nr
Match: gi|694320386|ref|XP_009351088.1| (PREDICTED: 60S ribosomal protein L35a-1 [Pyrus x bretschneideri])

HSP 1 Score: 96.7 bits (239), Expect = 2.4e-17
Identity = 47/63 (74.60%), Postives = 55/63 (87.30%), Query Frame = 1 

Query: 1  MVKGRQGERVKLYIRGMVLRYKRSKSNQYPRTSLIQIGGVNTREEVAWYVGKCLAFT-RS 60
          MVKGRQGER++LY+RG VL YKRSKSNQYP TSLIQI GVNT+EEVAWY GK LA+  ++
Sbjct: 1  MVKGRQGERIRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60

Query: 61 KMK 63
          K+K
Sbjct: 61 KVK 63

[Close]
BLAST of Cla000524 vs. NCBI nr
Match: gi|502112306|ref|XP_004494288.1| (PREDICTED: 60S ribosomal protein L35a-1-like [Cicer arietinum])

HSP 1 Score: 96.7 bits (239), Expect = 2.4e-17
Identity = 47/63 (74.60%), Postives = 55/63 (87.30%), Query Frame = 1 

Query: 1  MVKGRQGERVKLYIRGMVLRYKRSKSNQYPRTSLIQIGGVNTREEVAWYVGKCLAFT-RS 60
          MVKGRQGERV+LY+RG VL YKRSKSNQYP TSL+QI GVNT+EEVAWY GK LA+  ++
Sbjct: 1  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTKEEVAWYAGKRLAYIYKA 60

Query: 61 KMK 63
          K+K
Sbjct: 61 KVK 63

The following BLAST results are available for this feature:
BLAST of Cla000524 vs. Swiss-Prot
Match NameE-valueIdentityDescription
R35A1_ARATH4.8e-1873.2160S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA PE=3 SV=1[more]
R35A3_ARATH4.8e-1875.0060S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=3 SV=1[more]
R35A2_ARATH1.4e-1778.1860S ribosomal protein L35a-2 OS=Arabidopsis thaliana GN=RPL35AB PE=3 SV=1[more]
R35A4_ARATH1.8e-1776.3660S ribosomal protein L35a-4 OS=Arabidopsis thaliana GN=RPL35AD PE=3 SV=2[more]
RL35A_DICDI7.2e-0650.0060S ribosomal protein L35a OS=Dictyostelium discoideum GN=rpl35a PE=3 SV=1[more]
BLAST of Cla000524 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A022QFA1_ERYGU1.3e-1776.19Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016658mg PE=4 SV=1[more]
A0A022RPU6_ERYGU2.2e-1774.60Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015450mg PE=4 SV=1[more]
A0A068V006_COFCA2.2e-1773.02Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00039165001 PE=4 SV=1[more]
A9PB30_POPTR2.2e-1774.60Ribosomal protein L33 OS=Populus trichocarpa GN=POPTR_0008s06370g PE=2 SV=1[more]
A0A067LKI6_JATCU2.2e-1774.60Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01339 PE=4 SV=1[more]
BLAST of Cla000524 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07070.12.7e-1973.21 Ribosomal protein L35Ae family protein[more]
AT1G74270.12.7e-1975.00 Ribosomal protein L35Ae family protein[more]
AT1G41880.17.9e-1978.18 Ribosomal protein L35Ae family protein[more]
AT3G55750.11.0e-1876.36 Ribosomal protein L35Ae family protein[more]
BLAST of Cla000524 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778695048|ref|XP_011653915.1|2.8e-1877.78PREDICTED: 60S ribosomal protein L35a-1-like [Cucumis sativus][more]
gi|659083091|ref|XP_008442180.1|1.4e-1776.19PREDICTED: 60S ribosomal protein L35a-1-like [Cucumis melo][more]
gi|848900481|ref|XP_012850403.1|1.8e-1776.19PREDICTED: 60S ribosomal protein L35a-3-like [Erythranthe guttata][more]
gi|694320386|ref|XP_009351088.1|2.4e-1774.60PREDICTED: 60S ribosomal protein L35a-1 [Pyrus x bretschneideri][more]
gi|502112306|ref|XP_004494288.1|2.4e-1774.60PREDICTED: 60S ribosomal protein L35a-1-like [Cicer arietinum][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001780Ribosomal_L35A
IPR009000Transl_B-barrel_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla000524Cla000524gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla000524Cla000524.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla000524.1.cds1Cla000524.1.cds1CDS


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001780Ribosomal protein L35APRODOMPD012670coord: 14..67
score: 9.0
IPR001780Ribosomal protein L35APANTHERPTHR1090260S RIBOSOMAL PROTEIN L35Acoord: 1..56
score: 5.9
IPR001780Ribosomal protein L35APFAMPF01247Ribosomal_L35Aecoord: 12..62
score: 1.7
IPR009000Translation protein, beta-barrel domainunknownSSF50447Translation proteinscoord: 12..63
score: 1.38
NoneNo IPR availablePANTHERPTHR10902:SF4SUBFAMILY NOT NAMEDcoord: 1..56
score: 5.9