ClCG06G007740.1 (mRNA) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGGATTGTTCGTGGGATTTTTGTGGGATTGATTTTGATGATGATAATATTTGTAAGAGGAAATGAAGGTCAATCTTATAAAAGAGTAGGAGTGAAGAAATTGGCATGGAAGACTGTGGTTGTTGACCAGAATGGCCATGGAAATTTCTCTACCATTCAAGCTGCCATTGATTCTGTTCCTTCTAATAATAGGTTTTGGATCTCCATTCATGTTAACCCTGGTGTTTATAGGTATTTATTGTTCTCTTTTAATTCCTTTCATATATGAGATTATTAAACTTTAAATTTTGTTTTTTTTTTTCTTTTTCTAAATGTTTGTGTGACAACCCGTTAATTCAATAGTTATTAGGAATAGCTACATTGTGGCAATCTCATTTAATATAATATCAATCTGTATTGACATTGAAACCAAAATATATTAGTAGGTTTGATTTTGGTTGGTTTAGGTTTTTGTTGGGAAACTAGTTTGATCTTTTGAATGGTATGTTTTTCTCTTGGCATGGACTTTTAATTGATGGGTTGGTTCATCTTCAATAAGCTGGTAGAGCAACTGATTTCATTTTCTTATTAATAACAACATTATAGGTCAGTTAGGTATCACGATTTAATTTTTGAAAATAAAGCTCACTATTTACACTCATTTATTTGTTTTGTTATATCTTACTTTTTGGAACTATTTTACCAAAGTATTGAAATTAAAGGTGGCCAAAATAAGTATACAACAGCTCGCATACTGCTTCTCGATTTTCCCATCCATGATTAAATCTTTTTTAGAAATGCTAAAAAATCGAGCCCTCCTTAAAACTAAAAAAAACCAAAAACTAAAGTTCTATTTGCTAATCAATTAGTTTTTTTTTTTTTCTTTTCTTTTAAATTATACTTGTTTTCTTTTACTCATAGTTTTTACGTATCTAAAAATTTGAATTCTTAGTTATTTTTTAGAAACAACATTAAAAAAAAAAAACTATATATATATTAACTTTTAAAATGTGGTTGATTTTGAAAATACTCTTTAAATTTAATTTAGCGAAAGATGTAAATGTTGTTTAATATAGATGCTTAATTAAAAAAAAAAAAAACAAATGATTAATAAACCGAGTTTAAATTATTAATTCCTTTTTTTTCCCTCTTAATTCAATGGTTGGATATCTCTTTTGCTTGATTGTTGTTTTCGATTATTACCTTAAATAATTCTTTCTTTCGTACAATTTCCTTAAATAAATTAAGGGGCACATACCTTTTTGGTTTTCGAAATTAAAATACTTTAAATTTTATATACTCTTAAAATGTAAAGATTACTATTGAATTTGAATAATTGTCTGAGAATTTAAAATGTGATTATTATTATTATTATTATTATTATTATTATTATTATTATTAATTATTATTTGTTCGTATTTAGAGAGAAGGTGAAAATCCCATATGATAAACCATATATCATTTTGAAAGGACAAAGAAAAAGAACAACAAAGGTTGTTTGGGACGACCATCTCACTGTTGCTCAGAGCCCTACTTTCACTTCTTCAGCTGATAATATTGTCGTCAAATCCATCACTTTTGTGGTATGTATAATAATAATATAACCGAAAAAATAATACAATTTTTTTTCCCTTCCATATTGAATCTAGTTTCCATTATTAGGTCTTTAAGTTTTAAAATACTATACTTTTAGTCATTAAATTTTGAGTTTCCTTCAATAATTTTGAGTTTACAGTTTACTTCTAATGCTCAAGTTTTGTTTCAAGTTAATCTCTAAATTTATACTTTTAACCTTGATTTTCATTACATACTCACTTTATCTTTAGTGTTAATATCTATTAATTAATTTAAAAGATTTATAATTAATTAAAGTTTTACTATTTTTTTCATAACTATTTTAAATTAATTAATAGACATCATTGGCAAAAACTAAAAGTATTGAGTATTTGGTGAAAATCAAGGTTGAAACGTAAATCTTGAAACCTAAGAACAAAATTGAAACAAAACTAAGACCTAAATGGTAAAGTTTTGAAACTATTTCAAACTCAAAACTTAAAGACAAAAAATGTAACATTTTGAAACTTAAAGGCCACTACATAAAAGTAATTTGGACCAAAAAAGGATGTTCTCAAATATAAATAACATTAAAGAAGAGCTTGAAGAATCATTTGAAAACTTAATTAGTCTCTCAGTTTTGAACAAGTGCGTTTGGTCCTTGGGTTTTCAAAACATATTATTTTTAGTACCTACATTTTTCAAAATAGGTGCATTTGGACTCTAAGTTTTCAAAATGTATCTTTTTTTAGTCTCTAAGTTTTTAAGAACATGTCTAATAAAGATCCCTTGAGCACAATGACCTTTTAACCTATTTTAAAAAATTCGAAGACGAAAAAGTCATATTTTGAAAACTTAAAAACCAAATGAACTTATTCTAAAAAACACGTAGATTAAAAAAATATGTTTTAAAAACTCGGAGATCAAATACACAGACTCTTCAAAACTCAAGGACTAAAAATATAATTTTCTCGAAAACATTTATAAAAATTGTGACCGAATTCTTGTTATGTTATTGGTATTGTTAGAATTCTTACAACTATCCATGGAAGAATGGAAATCCAAGAGTTCCAGCAGTAGCAGCAATGATTACAGGCGACAAGTCGTCTTTCTATAGATGTGGTTTCTATGGAGTTCAGGACACATTATGGGATGATCAAGGACGACATTACTATCATCGTTGCACCATTCAAGGAGCTGTCGACTTTATTTTTGGAGCTGCCCAATCCATTTTTCAGGTTTTTATTTTTTGCTCCCTAAATTTTTAATCTCCTTTCCATTAGTGCCTAAGTTTTAAAATCATACTTTATAAAACCTTGAGTTTTGAGTTTAAATTTAAATTATATGTAGTCTTCCTAGGTTTTAAAATATCACGTTACTTGAGTCTTGAGTTTTGTTTCTATTTGATCCCTAGAGCTTCGAAGATAATTTACACCTTTCAACTTTTACTAACTACTCACTTTTAGTCATTATTGTTAATTTGTATTGATTAATTTAAAATAGTTAAATTGCGTAAAATATTGAAACATAAAGATTACATGAGATTTAAATTGAAAATTCAAGGGTAAACGTGTAAATTTCAAAGGGACTAGATGAAAACTTAACTCAAAGTAAAGGGTATCCTCTCTTTATTTATTTCAAAATTTCATTTTTTTCTATTTTATTTTAAAGTCAAACGATTTGATTGACAAGGTTGTAAGGTAAGCTATTCACTTGATATTATCTTGTTTTGCTTTCATTTTAATTAACCATTGAAATCGTTAATAAATAGGTATGGTTGAATTACCAAAAATAGTTTTGATGTTGATTATTTTGATATAACTTCATGTCTTTAGTTCTTAATTAGGCCTTTTAATAGACTTCTTAATAATTCGACTTTTAAAGTTTGTATTTTGTTGAAGGAGGAGTCGTTATTCGGTTTTTCGATATGCATAATACGAAGTGAAAGAAGAAAAATAAGATAAATGGAATGCAGTAGAAAGCTTTTATAAAATTACAAGAATTTTACAATACGAAATATTTAACTTAATGGACCATCTTAATACCTCGGTTATAGTAAATAGTGGAATAGTGAGGAGTAAACATGAACTCTTAATATGTTTTTGTTTTTAATAAGATATTTAATTTGTGTTATTTTATGTAAATTTGGGTGATATTAGGGGTGTTCAATATCAGTGGTTGGAGAAGCACTTCTTCCATTAGGGTCCACAAGCTTCATAACAGCACAGGGAAGAACCAACCCAAATGATGCAAATGGTTTTGTTTTCAAAGAATGCAAGGTGTTTGGGAGTGGCTCAGCCTTCTTAGGAAGGCCATGGAGAGGCTACTCAAGAGTTATCTTTTACAACTCCAACTTCTCCAACATTATAAACCCTTATGGTTGGGATCCTTGGCATTTTGTTGGTCAAGAGTAAGTTATCCTTTGTTCTTTCAACTCTATTTATTTATTATTCATTATTTCTTTTCAACTTTCTTTTCTTTTCTTTTTCTTTTTTTTTTTTTTTAAACTTTGCTCATTATTTAAAAAATATCCAAATCCTTTCAAAAATAATAATATTGTCTTTTGACCTTTCATAAATGTTTCAAAACTATATCTATGGAATGCGAGTTTTGTTAGAATATTGAATGAAGATTAGAACTTAGAACAATGTGATGGTGAACATGAAACGGTTCGATGGTCCCTATTTTAGCTTCAAATCATCATTGTATGGTTCATATCATAAGTTATGTCTAAAATTAGTATGGATTTCTCTAATCCAATATTAGTTTTGAAAATTTTATAAAAGGTCAAGGACAAAAGGATAATATTATAATCTTTAGAAAAAAAAATAGTAATATTTAGGGTCTTTTTTTAAAAAAATAATAATAATAATAATTTAGACTATTTTATAATATGTTTGATTTCAAAATGGGGATACAAAATGAAAAGATTGATTGGGAATTGGGGGTTGGAAATGTGGTTTTTAGAGTTGGTAAGCACTTAGGGTTCTTATCTATGAAAAGAAATGTGTCTTTTTGTTTCTTTCAATCATGATTTTTTTTTTTTATTATTTATTTGGCTCATGTTAACAAGAAGAAATTAATACAATTAGTGACTCCTACAATAAGAAAATTTGGCCGGTTTAATAATAGTTAATTTTTAATATGAATCATCTATTTTTAGAAATTTAGTGTTTGGTCCATGTAAATTATAAATTTGCAAATAAAATAAATAAAATATTTTACATGTAAAAAGTAATTTAAGAAAGATTTAGAGAAATAAAAGGAAAGTTTTTATTTTCTTATACTAAATATTTTATTTTGTTAATTCAGGAACCAACTTACCTATGTAGAAAATGGGTGTTACGGACCAGGTGCTGACATGTCGCATCGAGTAAAATGGGAAAAGAAGCTCCATTTGAATGAAATACGACGACTCACTAGCATGAGTTTTATCGACACTCAAGGTTGGATCCAAAATCAACCTTGGTAA ATGTGGATTGTTCGTGGGATTTTTGTGGGATTGATTTTGATGATGATAATATTTGTAAGAGGAAATGAAGGTCAATCTTATAAAAGAGTAGGAGTGAAGAAATTGGCATGGAAGACTGTGGTTGTTGACCAGAATGGCCATGGAAATTTCTCTACCATTCAAGCTGCCATTGATTCTGTTCCTTCTAATAATAGGTTTTGGATCTCCATTCATGTTAACCCTGGTGTTTATAGAGAGAAGGTGAAAATCCCATATGATAAACCATATATCATTTTGAAAGGACAAAGAAAAAGAACAACAAAGAATGGAAATCCAAGAGTTCCAGCAGTAGCAGCAATGATTACAGGCGACAAGTCGTCTTTCTATAGATGTGGTTTCTATGGAGTTCAGGACACATTATGGGATGATCAAGGACGACATTACTATCATCTGGTTGGAGAAGCACTTCTTCCATTAGGGTCCACAAGCTTCATAACAGCACAGGGAAGAACCAACCCAAATGATGCAAATGGTTTTGTTTTCAAAGAATGCAAGGTGTTTGGGAGTGGCTCAGCCTTCTTAGGAAGGCCATGGAGAGGCTACTCAAGAGTTATCTTTTACAACTCCAACTTCTCCAACATTATAAACCCTTATGGTTGGGATCCTTGGCATTTTGTTGGTCAAGAGAACCAACTTACCTATGTAGAAAATGGGTGTTACGGACCAGGTGCTGACATGTCGCATCGAGTAAAATGGGAAAAGAAGCTCCATTTGAATGAAATACGACGACTCACTAGCATGAGTTTTATCGACACTCAAGGTTGGATCCAAAATCAACCTTGGTAA ATGTGGATTGTTCGTGGGATTTTTGTGGGATTGATTTTGATGATGATAATATTTGTAAGAGGAAATGAAGGTCAATCTTATAAAAGAGTAGGAGTGAAGAAATTGGCATGGAAGACTGTGGTTGTTGACCAGAATGGCCATGGAAATTTCTCTACCATTCAAGCTGCCATTGATTCTGTTCCTTCTAATAATAGGTTTTGGATCTCCATTCATGTTAACCCTGGTGTTTATAGAGAGAAGGTGAAAATCCCATATGATAAACCATATATCATTTTGAAAGGACAAAGAAAAAGAACAACAAAGAATGGAAATCCAAGAGTTCCAGCAGTAGCAGCAATGATTACAGGCGACAAGTCGTCTTTCTATAGATGTGGTTTCTATGGAGTTCAGGACACATTATGGGATGATCAAGGACGACATTACTATCATCTGGTTGGAGAAGCACTTCTTCCATTAGGGTCCACAAGCTTCATAACAGCACAGGGAAGAACCAACCCAAATGATGCAAATGGTTTTGTTTTCAAAGAATGCAAGGTGTTTGGGAGTGGCTCAGCCTTCTTAGGAAGGCCATGGAGAGGCTACTCAAGAGTTATCTTTTACAACTCCAACTTCTCCAACATTATAAACCCTTATGGTTGGGATCCTTGGCATTTTGTTGGTCAAGAGAACCAACTTACCTATGTAGAAAATGGGTGTTACGGACCAGGTGCTGACATGTCGCATCGAGTAAAATGGGAAAAGAAGCTCCATTTGAATGAAATACGACGACTCACTAGCATGAGTTTTATCGACACTCAAGGTTGGATCCAAAATCAACCTTGGTAA MWIVRGIFVGLILMMIIFVRGNEGQSYKRVGVKKLAWKTVVVDQNGHGNFSTIQAAIDSVPSNNRFWISIHVNPGVYREKVKIPYDKPYIILKGQRKRTTKNGNPRVPAVAAMITGDKSSFYRCGFYGVQDTLWDDQGRHYYHLVGEALLPLGSTSFITAQGRTNPNDANGFVFKECKVFGSGSAFLGRPWRGYSRVIFYNSNFSNIINPYGWDPWHFVGQENQLTYVENGCYGPGADMSHRVKWEKKLHLNEIRRLTSMSFIDTQGWIQNQPW
BLAST of ClCG06G007740.1 vs. Swiss-Prot
Match: PME55_ARATH (Probable pectinesterase 55 OS=Arabidopsis thaliana GN=PME55 PE=2 SV=1) HSP 1 Score: 224.6 bits (571), Expect = 1.4e-57 Identity = 121/300 (40.33%), Postives = 161/300 (53.67%), Query Frame = 1
BLAST of ClCG06G007740.1 vs. Swiss-Prot
Match: PME29_ARATH (Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1) HSP 1 Score: 221.9 bits (564), Expect = 8.8e-57 Identity = 105/197 (53.30%), Postives = 130/197 (65.99%), Query Frame = 1
HSP 2 Score: 91.3 bits (225), Expect = 1.8e-17 Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 1
BLAST of ClCG06G007740.1 vs. Swiss-Prot
Match: PME10_ARATH (Putative pectinesterase 10 OS=Arabidopsis thaliana GN=PME10 PE=2 SV=1) HSP 1 Score: 202.6 bits (514), Expect = 5.5e-51 Identity = 118/298 (39.60%), Postives = 150/298 (50.34%), Query Frame = 1
BLAST of ClCG06G007740.1 vs. Swiss-Prot
Match: PME66_ARATH (Probable pectinesterase 66 OS=Arabidopsis thaliana GN=PME66 PE=2 SV=2) HSP 1 Score: 190.7 bits (483), Expect = 2.2e-47 Identity = 121/325 (37.23%), Postives = 157/325 (48.31%), Query Frame = 1
BLAST of ClCG06G007740.1 vs. Swiss-Prot
Match: PME11_ARATH (Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=3 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 1.7e-44 Identity = 112/284 (39.44%), Postives = 142/284 (50.00%), Query Frame = 1
BLAST of ClCG06G007740.1 vs. TrEMBL
Match: B9RWI7_RICCO (Pectinesterase OS=Ricinus communis GN=RCOM_1019830 PE=4 SV=1) HSP 1 Score: 310.8 bits (795), Expect = 1.6e-81 Identity = 160/296 (54.05%), Postives = 192/296 (64.86%), Query Frame = 1
BLAST of ClCG06G007740.1 vs. TrEMBL
Match: A0A061ELR2_THECC (Pectinesterase OS=Theobroma cacao GN=TCM_020334 PE=4 SV=1) HSP 1 Score: 308.1 bits (788), Expect = 1.0e-80 Identity = 154/297 (51.85%), Postives = 188/297 (63.30%), Query Frame = 1
BLAST of ClCG06G007740.1 vs. TrEMBL
Match: M5Y357_PRUPE (Pectinesterase OS=Prunus persica GN=PRUPE_ppa020682mg PE=4 SV=1) HSP 1 Score: 299.7 bits (766), Expect = 3.7e-78 Identity = 154/305 (50.49%), Postives = 187/305 (61.31%), Query Frame = 1
BLAST of ClCG06G007740.1 vs. TrEMBL
Match: A0A059CS97_EUCGR (Pectinesterase (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_C02449 PE=4 SV=1) HSP 1 Score: 296.6 bits (758), Expect = 3.1e-77 Identity = 150/300 (50.00%), Postives = 193/300 (64.33%), Query Frame = 1
BLAST of ClCG06G007740.1 vs. TrEMBL
Match: V4S5Q9_9ROSI (Pectinesterase OS=Citrus clementina GN=CICLE_v10007120mg PE=4 SV=1) HSP 1 Score: 295.4 bits (755), Expect = 7.0e-77 Identity = 153/338 (45.27%), Postives = 201/338 (59.47%), Query Frame = 1
BLAST of ClCG06G007740.1 vs. TAIR10
Match: AT5G18990.1 (AT5G18990.1 Pectin lyase-like superfamily protein) HSP 1 Score: 224.6 bits (571), Expect = 7.7e-59 Identity = 121/300 (40.33%), Postives = 161/300 (53.67%), Query Frame = 1
BLAST of ClCG06G007740.1 vs. TAIR10
Match: AT3G24130.1 (AT3G24130.1 Pectin lyase-like superfamily protein) HSP 1 Score: 221.9 bits (564), Expect = 5.0e-58 Identity = 105/197 (53.30%), Postives = 130/197 (65.99%), Query Frame = 1
HSP 2 Score: 91.3 bits (225), Expect = 1.0e-18 Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 1
BLAST of ClCG06G007740.1 vs. TAIR10
Match: AT2G19150.1 (AT2G19150.1 Pectin lyase-like superfamily protein) HSP 1 Score: 202.6 bits (514), Expect = 3.1e-52 Identity = 118/298 (39.60%), Postives = 150/298 (50.34%), Query Frame = 1
BLAST of ClCG06G007740.1 vs. TAIR10
Match: AT2G47280.1 (AT2G47280.1 Pectin lyase-like superfamily protein) HSP 1 Score: 190.7 bits (483), Expect = 1.2e-48 Identity = 121/325 (37.23%), Postives = 157/325 (48.31%), Query Frame = 1
BLAST of ClCG06G007740.1 vs. TAIR10
Match: AT2G21610.1 (AT2G21610.1 pectinesterase 11) HSP 1 Score: 181.0 bits (458), Expect = 9.7e-46 Identity = 112/284 (39.44%), Postives = 142/284 (50.00%), Query Frame = 1
BLAST of ClCG06G007740.1 vs. NCBI nr
Match: gi|659114888|ref|XP_008457276.1| (PREDICTED: probable pectinesterase 29 [Cucumis melo]) HSP 1 Score: 449.1 bits (1154), Expect = 5.4e-123 Identity = 226/338 (66.86%), Postives = 248/338 (73.37%), Query Frame = 1
BLAST of ClCG06G007740.1 vs. NCBI nr
Match: gi|778674132|ref|XP_011650140.1| (PREDICTED: probable pectinesterase 29 [Cucumis sativus]) HSP 1 Score: 438.3 bits (1126), Expect = 9.6e-120 Identity = 221/338 (65.38%), Postives = 243/338 (71.89%), Query Frame = 1
BLAST of ClCG06G007740.1 vs. NCBI nr
Match: gi|223542702|gb|EEF44239.1| (Pectinesterase U1 precursor, putative [Ricinus communis]) HSP 1 Score: 310.8 bits (795), Expect = 2.3e-81 Identity = 160/296 (54.05%), Postives = 192/296 (64.86%), Query Frame = 1
BLAST of ClCG06G007740.1 vs. NCBI nr
Match: gi|1000968126|ref|XP_002518106.2| (PREDICTED: probable pectinesterase 29 [Ricinus communis]) HSP 1 Score: 310.8 bits (795), Expect = 2.3e-81 Identity = 160/296 (54.05%), Postives = 192/296 (64.86%), Query Frame = 1
BLAST of ClCG06G007740.1 vs. NCBI nr
Match: gi|590656823|ref|XP_007034381.1| (Pectinesterase [Theobroma cacao]) HSP 1 Score: 308.1 bits (788), Expect = 1.5e-80 Identity = 154/297 (51.85%), Postives = 188/297 (63.30%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
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