ClCG05G015460.1 (mRNA) Watermelon (Charleston Gray)

NameClCG05G015460.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 27187696 .. 27188799 (-)
Sequence length732
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTATGTTGGAAGTCATATGATTACAACAAGCTGAATCAAGTAGCCAAGAGGTACCTGGTGTGACAACAAGAGCAGTAAAATTGGAAGAGATCATCTTCTTTGACGAAAACGTGACAGAAGACTGGGCTCCTTTGACAGAGTTGCCGACGGAAGCGATGAACACAATGGACTGATAGTACCGGCGGAATTACGAACGGAGATGACTCTGGTAGACTTTCTTTGGTAAGATCTACGAACAGACGGCAGATTTGGTAGCAACGGTGGATCTGGTCGACAGCGGCGAATCTTGTAGCGGCGGCAAATCTAGTAGGTGGTGGCAGAATGTTAACCCTAAAGTTAGGGCTCCGATACCATGTGAGAAATGTTGTATTTTATTGTATTTTGTGTTAATACATTACAAAGATAGTACAAGAAATAAATATACATAAATAATACAAAATAAGGAAGGTATTCTCAAATTAATTTAGAATTATACCCTAATTACTCAGAGAAAACGTTAACGACAATTGTTGTGATAGATGGACCGCAATTAGCTCATCCTTCAGCTTGGAAGAGCTAAGGTTAGCAAGAACCTACTGGGGCATCAAATGACAGGAATAATCTGTGGCTTAATAAACGAATCCCAGATCACAATATGAAAGGGAACTGGATTTTGAAATATTATGAAGAACTCCAAAAGTCAGCTTCGAAGACCAAAAATCACAACCAAATAGGAATACCTGACCGCACCCATAAATGGTAGCCACCACAATCAGGATCTTTCAAAATGAATGTGGATGCAGCTTGGAATCAGTAATTATCAGAAATTCAGAAGGCCTCATAGTTGGAGCAGCATCCCATTCAATCGATCTAAACTTCGACCCTGTTATACAAGAAATCCTAGCAATTTGTGGGTGCCTTCGCTTCGCAAGCTCCCTTTCCTGTCCAAACTTAATTATTGAATCCGATAGAAAACAAACGATTAATCTTATTCAAGGTGTTGATTTCTGGTTGAGTACCGCCGATTGCTGGATTGAAGAGATAAAGATTTGGGTAAGAAGTTCAATTCAATCTCCTTCACCTTTTGTCACCGTGAATGTAATAATGTGGCTGATCGAATAG

mRNA sequence

ATGCTATGTTGGAAGTCATATGATTACAACAAGCTGAATCAAGTAGCCAAGAGAAGACTGGGCTCCTTTGACAGAGTTGCCGACGGAAGCGATGAACACAATGGACTGATAGTACCGGCGGAATTACGAACGGAGATGACTCTGACGGCAGATTTGGTAGCAACGGTGGATCTGGTCGACAGCGGCGAATCTTGTAGCGGCGGCAAATCTAGTAGGTGGTGGCAGAATGTTAACCCTAAACAAGAACCTACTGGGGCATCAAATGACAGGAATAATCTGTGGCTTAATAAACGAATCCCAGATCACAATATGAAAGGGAACTGGATTTTGAAATATTATGAAGAACTCCAAAAGTCAGCTTCGAAGACCAAAAATCACAACCAAATAGGAATACCTGACCGCACCCATAAATGCTTGGAATCAGTAATTATCAGAAATTCAGAAGGCCTCATAGTTGGAGCAGCATCCCATTCAATCGATCTAAACTTCGACCCTGTTATACAAGAAATCCTAGCAATTTGTGGGTGCCTTCGCTTCGCAAGCTCCCTTTCCTGTCCAAACTTAATTATTGAATCCGATAGAAAACAAACGATTAATCTTATTCAAGGTGTTGATTTCTGGTTGAGTACCGCCGATTGCTGGATTGAAGAGATAAAGATTTGGGTAAGAAGTTCAATTCAATCTCCTTCACCTTTTGTCACCGTGAATGTAATAATGTGGCTGATCGAATAG

Coding sequence (CDS)

ATGCTATGTTGGAAGTCATATGATTACAACAAGCTGAATCAAGTAGCCAAGAGAAGACTGGGCTCCTTTGACAGAGTTGCCGACGGAAGCGATGAACACAATGGACTGATAGTACCGGCGGAATTACGAACGGAGATGACTCTGACGGCAGATTTGGTAGCAACGGTGGATCTGGTCGACAGCGGCGAATCTTGTAGCGGCGGCAAATCTAGTAGGTGGTGGCAGAATGTTAACCCTAAACAAGAACCTACTGGGGCATCAAATGACAGGAATAATCTGTGGCTTAATAAACGAATCCCAGATCACAATATGAAAGGGAACTGGATTTTGAAATATTATGAAGAACTCCAAAAGTCAGCTTCGAAGACCAAAAATCACAACCAAATAGGAATACCTGACCGCACCCATAAATGCTTGGAATCAGTAATTATCAGAAATTCAGAAGGCCTCATAGTTGGAGCAGCATCCCATTCAATCGATCTAAACTTCGACCCTGTTATACAAGAAATCCTAGCAATTTGTGGGTGCCTTCGCTTCGCAAGCTCCCTTTCCTGTCCAAACTTAATTATTGAATCCGATAGAAAACAAACGATTAATCTTATTCAAGGTGTTGATTTCTGGTTGAGTACCGCCGATTGCTGGATTGAAGAGATAAAGATTTGGGTAAGAAGTTCAATTCAATCTCCTTCACCTTTTGTCACCGTGAATGTAATAATGTGGCTGATCGAATAG

Protein sequence

MLCWKSYDYNKLNQVAKRRLGSFDRVADGSDEHNGLIVPAELRTEMTLTADLVATVDLVDSGESCSGGKSSRWWQNVNPKQEPTGASNDRNNLWLNKRIPDHNMKGNWILKYYEELQKSASKTKNHNQIGIPDRTHKCLESVIIRNSEGLIVGAASHSIDLNFDPVIQEILAICGCLRFASSLSCPNLIIESDRKQTINLIQGVDFWLSTADCWIEEIKIWVRSSIQSPSPFVTVNVIMWLIE
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG05G015460ClCG05G015460gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG05G015460.1ClCG05G015460.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG05G015460.1.cds5ClCG05G015460.1.cds5CDS
ClCG05G015460.1.cds4ClCG05G015460.1.cds4CDS
ClCG05G015460.1.cds3ClCG05G015460.1.cds3CDS
ClCG05G015460.1.cds2ClCG05G015460.1.cds2CDS
ClCG05G015460.1.cds1ClCG05G015460.1.cds1CDS


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13456RVT_3coord: 142..224
score: 1.