ClCG05G011960.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G011960.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	RPGR
Location	CG_Chr05 : 14988032 .. 14988430 (-)
Sequence length	399

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCATCAGCTCCAGAAACTGCGCCGGATTAAACGCCGGCAGCTCGCACCCCTCTGGCCGCCACCTCCATCGGAGGAAGCCGGCATCGGGTCGGCCGTACTTAAGGCAGTTCAGATGGTCGTGAATCGCCCAGCAGGTATCATTAGTGTAGGGGAGAGCGGCGTTAGGGTTGGGATTAGGGATCCAATCGCCGATGGCGAGATCGCAGGGGAGGGCGGAGAGAATGGAGAGATTTCCGGAGGTGAAGATTTGGGGGCGGAAGGCGGCGGAAGCGGCGGCGGCAGGGGATTCGAGAGAGGTCTTGAGGAGGAGGAGGGAGTAATTGAGGAGAGGGAAAGAGAGGGGGATGGTGGTGAGGATCAACAAAGCCAATGCTCCGCCGAGAATGGCCATTAG

mRNA sequence

ATGCCTCATCAGCTCCAGAAACTGCGCCGGATTAAACGCCGGCAGCTCGCACCCCTCTGGCCGCCACCTCCATCGGAGGAAGCCGGCATCGGGTCGGCCGTACTTAAGGCAGTTCAGATGGTCGTGAATCGCCCAGCAGGTATCATTAGTGTAGGGGAGAGCGGCGTTAGGGTTGGGATTAGGGATCCAATCGCCGATGGCGAGATCGCAGGGGAGGGCGGAGAGAATGGAGAGATTTCCGGAGGTGAAGATTTGGGGGCGGAAGGCGGCGGAAGCGGCGGCGGCAGGGGATTCGAGAGAGGTCTTGAGGAGGAGGAGGGAGTAATTGAGGAGAGGGAAAGAGAGGGGGATGGTGGTGAGGATCAACAAAGCCAATGCTCCGCCGAGAATGGCCATTAG

Coding sequence (CDS)

ATGCCTCATCAGCTCCAGAAACTGCGCCGGATTAAACGCCGGCAGCTCGCACCCCTCTGGCCGCCACCTCCATCGGAGGAAGCCGGCATCGGGTCGGCCGTACTTAAGGCAGTTCAGATGGTCGTGAATCGCCCAGCAGGTATCATTAGTGTAGGGGAGAGCGGCGTTAGGGTTGGGATTAGGGATCCAATCGCCGATGGCGAGATCGCAGGGGAGGGCGGAGAGAATGGAGAGATTTCCGGAGGTGAAGATTTGGGGGCGGAAGGCGGCGGAAGCGGCGGCGGCAGGGGATTCGAGAGAGGTCTTGAGGAGGAGGAGGGAGTAATTGAGGAGAGGGAAAGAGAGGGGGATGGTGGTGAGGATCAACAAAGCCAATGCTCCGCCGAGAATGGCCATTAG

Protein sequence

MPHQLQKLRRIKRRQLAPLWPPPPSEEAGIGSAVLKAVQMVVNRPAGIISVGESGVRVGIRDPIADGEIAGEGGENGEISGGEDLGAEGGGSGGGRGFERGLEEEEGVIEEREREGDGGEDQQSQCSAENGH

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG05G011960	ClCG05G011960	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG05G011960.1	ClCG05G011960.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G011960.1.cds1	ClCG05G011960.1.cds1	CDS