ClCG05G005980.1 (mRNA) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAAATAGAGAAAATCCATAGCCATGGAGGATCTTACCGAAGAAGAAAGACGTGCTTTACGGGGAAGCAAATTTGCGCCTCTCCCATCCCAATCCACTTCCTCTCGATCTCAACCAAGGTTTTTAAACTAATAATACATTACTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTCTTTTCTTTCAGTCTCTAGGGTTTTCTCTTCTCTAAATCCTTAATCAATGGGTTTCTATTCGAAGGTTGGCTCATCCAGGTGGACCATTGAAGACCAACAAAGCGGCGGCTCTCGCCAAATTTCTCGAAAGGAAATTGCACCAAGATCCTAATGCTTTGTCTTCTATCAATCCCCAGATTTTGGACCTCGCTGTTCGGAATGCCAAAGCCTCTGTTCTATCCAGTTCGTATTCTTTCCCCCTTTTTTCCATCTCTGTTTTTCTTGTTGTTGCAATTGAGGAATGAAGGTTGTTTTTGTAGAGAGCATATGAAGAATATAGACCGTAAATTGCTGTTACTATGATTGTATTGAATAGGAAGTAAAATTAACTAATCAAATCAAATCAACTTGAAGCTTTGCTCTGTCCTGCCCTCTCTTTTTCTTTTCTCTATCTATATCTATGATGTTTTATCAGGTGGCACGTCAGGTTCTGGCACGACTATTCGCCACGTGGATACATTCGATGATCCTGAGGTTTTTTTCTATTCACAATTCTTGAGTCTAATGTCTTATCATCATTCTAGTAATAATTTGACTGACGATCATGATGATGATTTAGGTCTCTTTTGACGAAGGGGAAGCCATGAATTCTGAGCCTAGAAAGCAAAAGAAGAAGAACAAGAAGAGAAATAAGAAGAATAAAAGGCAAAAGGTCGGAATCCCTTCATGGTTTTGTTTCAAGCTCTATAGTCTTAGTGTTGCCTCTATATTTCCTCGTAATAAATCTGTTGTGACTGTACTGCAGATTGTTGATGACTCGGAGTGTGGCGTTGGGAAAAAACCTAAAAAGAAGTTGAGATTGTGAGCTGAAAGGAAACACAACTGGAGATATGATATTCAGTCTTCAGAAGATTGGGGAATTAACTTGAAAGGAGTTGGATGAAACCATTTTGGAAGCAAGGCAGTTATTAAGCCCTACAGGGTTGTTGCTGTTCCTGATATTTTTTGAACAAGGAGAACTATTTAATCTCATATTCACGAGTCTAAAACACTTGATTGACTTGATTTCTCTAGTAAAAGAATGCTGTTTAGCTTCTCTTACTCATGTTGCAACATTTTATTTTTTGTTGGCAAATTGCAACTTTCTTTAAATCCAATGGTTTAAATTCGATTGTTCATT AAAAAAATAGAGAAAATCCATAGCCATGGAGGATCTTACCGAAGAAGAAAGACGTGCTTTACGGGGAAGCAAATTTGCGCCTCTCCCATCCCAATCCACTTCCTCTCGATCTCAACCAAGGTTGGCTCATCCAGGTGGACCATTGAAGACCAACAAAGCGGCGGCTCTCGCCAAATTTCTCGAAAGGAAATTGCACCAAGATCCTAATGCTTTGTCTTCTATCAATCCCCAGATTTTGGACCTCGCTGTTCGGAATGCCAAAGCCTCTGTTCTATCCAGTGGCACGTCAGGTTCTGGCACGACTATTCGCCACGTGGATACATTCGATGATCCTGAGGTCTCTTTTGACGAAGGGGAAGCCATGAATTCTGAGCCTAGAAAGCAAAAGAAGAAGAACAAGAAGAGAAATAAGAAGAATAAAAGGCAAAAGGTCGGAATCCCTTCATGGTTTTGTTTCAAGCTCTATAGTCTTAGTGTTGCCTCTATATTTCCTCGTAATAAATCTGTTGTGACTGTACTGCAGATTGTTGATGACTCGGAGTGTGGCGTTGGGAAAAAACCTAAAAAGAAGTTGAGATTGTGAGCTGAAAGGAAACACAACTGGAGATATGATATTCAGTCTTCAGAAGATTGGGGAATTAACTTGAAAGGAGTTGGATGAAACCATTTTGGAAGCAAGGCAGTTATTAAGCCCTACAGGGTTGTTGCTGTTCCTGATATTTTTTGAACAAGGAGAACTATTTAATCTCATATTCACGAGTCTAAAACACTTGATTGACTTGATTTCTCTAGTAAAAGAATGCTGTTTAGCTTCTCTTACTCATGTTGCAACATTTTATTTTTTGTTGGCAAATTGCAACTTTCTTTAAATCCAATGGTTTAAATTCGATTGTTCATT ATGGAGGATCTTACCGAAGAAGAAAGACGTGCTTTACGGGGAAGCAAATTTGCGCCTCTCCCATCCCAATCCACTTCCTCTCGATCTCAACCAAGGTTGGCTCATCCAGGTGGACCATTGAAGACCAACAAAGCGGCGGCTCTCGCCAAATTTCTCGAAAGGAAATTGCACCAAGATCCTAATGCTTTGTCTTCTATCAATCCCCAGATTTTGGACCTCGCTGTTCGGAATGCCAAAGCCTCTGTTCTATCCAGTGGCACGTCAGGTTCTGGCACGACTATTCGCCACGTGGATACATTCGATGATCCTGAGGTCTCTTTTGACGAAGGGGAAGCCATGAATTCTGAGCCTAGAAAGCAAAAGAAGAAGAACAAGAAGAGAAATAAGAAGAATAAAAGGCAAAAGGTCGGAATCCCTTCATGGTTTTGTTTCAAGCTCTATAGTCTTAGTGTTGCCTCTATATTTCCTCGTAATAAATCTGTTGTGACTGTACTGCAGATTGTTGATGACTCGGAGTGTGGCGTTGGGAAAAAACCTAAAAAGAAGTTGAGATTGTGA MEDLTEEERRALRGSKFAPLPSQSTSSRSQPRLAHPGGPLKTNKAAALAKFLERKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTTIRHVDTFDDPEVSFDEGEAMNSEPRKQKKKNKKRNKKNKRQKVGIPSWFCFKLYSLSVASIFPRNKSVVTVLQIVDDSECGVGKKPKKKLRL
BLAST of ClCG05G005980.1 vs. TrEMBL
Match: A0A0A0LAK0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G153160 PE=4 SV=1) HSP 1 Score: 248.1 bits (632), Expect = 8.6e-63 Identity = 138/188 (73.40%), Postives = 144/188 (76.60%), Query Frame = 1
BLAST of ClCG05G005980.1 vs. TrEMBL
Match: A0A067KUV2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01999 PE=4 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 1.5e-43 Identity = 106/185 (57.30%), Postives = 124/185 (67.03%), Query Frame = 1
BLAST of ClCG05G005980.1 vs. TrEMBL
Match: U5G6R2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s22650g PE=4 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 3.4e-43 Identity = 106/185 (57.30%), Postives = 124/185 (67.03%), Query Frame = 1
BLAST of ClCG05G005980.1 vs. TrEMBL
Match: A0A061EW19_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_046784 PE=4 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 1.3e-42 Identity = 103/185 (55.68%), Postives = 127/185 (68.65%), Query Frame = 1
BLAST of ClCG05G005980.1 vs. TrEMBL
Match: A0A0B0NRZ7_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_04521 PE=4 SV=1) HSP 1 Score: 177.2 bits (448), Expect = 1.9e-41 Identity = 104/186 (55.91%), Postives = 127/186 (68.28%), Query Frame = 1
BLAST of ClCG05G005980.1 vs. TAIR10
Match: AT5G18540.1 (AT5G18540.1 unknown protein) HSP 1 Score: 164.9 bits (416), Expect = 4.9e-41 Identity = 96/186 (51.61%), Postives = 128/186 (68.82%), Query Frame = 1
BLAST of ClCG05G005980.1 vs. NCBI nr
Match: gi|449432830|ref|XP_004134201.1| (PREDICTED: uncharacterized protein LOC101221899 [Cucumis sativus]) HSP 1 Score: 248.1 bits (632), Expect = 1.2e-62 Identity = 138/188 (73.40%), Postives = 144/188 (76.60%), Query Frame = 1
BLAST of ClCG05G005980.1 vs. NCBI nr
Match: gi|659076795|ref|XP_008438870.1| (PREDICTED: uncharacterized protein LOC103483832 [Cucumis melo]) HSP 1 Score: 240.7 bits (613), Expect = 2.0e-60 Identity = 133/185 (71.89%), Postives = 138/185 (74.59%), Query Frame = 1
BLAST of ClCG05G005980.1 vs. NCBI nr
Match: gi|802578132|ref|XP_012069370.1| (PREDICTED: centromere/microtubule-binding protein CBF5 isoform X1 [Jatropha curcas]) HSP 1 Score: 184.1 bits (466), Expect = 2.2e-43 Identity = 106/185 (57.30%), Postives = 124/185 (67.03%), Query Frame = 1
BLAST of ClCG05G005980.1 vs. NCBI nr
Match: gi|566185400|ref|XP_006380179.1| (hypothetical protein POPTR_0008s22650g [Populus trichocarpa]) HSP 1 Score: 183.0 bits (463), Expect = 4.9e-43 Identity = 106/185 (57.30%), Postives = 124/185 (67.03%), Query Frame = 1
BLAST of ClCG05G005980.1 vs. NCBI nr
Match: gi|590660973|ref|XP_007035543.1| (Uncharacterized protein TCM_046784 [Theobroma cacao]) HSP 1 Score: 181.0 bits (458), Expect = 1.9e-42 Identity = 103/185 (55.68%), Postives = 127/185 (68.65%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
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