ClCG04G005500.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG04G005500.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr04 : 19194317 .. 19194523 (-)
Sequence length	207

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTCGTCGAAAAACGAAGAAATCAGAGACGAACAAGTAACAAAAACGTAAGAAAGGTAAAAAGTGAGAAAGAAGGGGAAGAAGATGAGGATGTGGGAACAGAAAAAGGAAGTGGAATAAGAAATTATTATATAGAAACAAGAAGAGAGGAGAAAGAAGTGAAAACCAGGGGCCATTTGGAACAGGAGGAATTGCTTCGATAG

mRNA sequence

ATGGGGTTCGTCGAAAAACGAAGAAATCAGAGACGAACAAGTAACAAAAACGTAAGAAAGGTAAAAAGTGAGAAAGAAGGGGAAGAAGATGAGGATGTGGGAACAGAAAAAGGAAGTGGAATAAGAAATTATTATATAGAAACAAGAAGAGAGGAGAAAGAAGTGAAAACCAGGGGCCATTTGGAACAGGAGGAATTGCTTCGATAG

Coding sequence (CDS)

ATGGGGTTCGTCGAAAAACGAAGAAATCAGAGACGAACAAGTAACAAAAACGTAAGAAAGGTAAAAAGTGAGAAAGAAGGGGAAGAAGATGAGGATGTGGGAACAGAAAAAGGAAGTGGAATAAGAAATTATTATATAGAAACAAGAAGAGAGGAGAAAGAAGTGAAAACCAGGGGCCATTTGGAACAGGAGGAATTGCTTCGATAG

Protein sequence

MGFVEKRRNQRRTSNKNVRKVKSEKEGEEDEDVGTEKGSGIRNYYIETRREEKEVKTRGHLEQEELLR

Homology

[Close]

BLAST of ClCG04G005500.1 vs. TrEMBL
Match: A0A0A0KYK2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G188420 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.3e-12
Identity = 42/67 (62.69%), Postives = 46/67 (68.66%), Query Frame = 1


Query: 1  MGFVEKRRNQRRTSNKNVRKVKSEKEGEEDEDVGTEKGSGIRNYYIETRREEKEVKTRGH 60
          MGFVEK   +     +   KV S++E E DED  TEKGSGIR YYIE R EEKE KT GH
Sbjct: 3  MGFVEKGEIRDEQVTRTEEKVTSQEEEEGDEDERTEKGSGIRKYYIERRGEEKERKTGGH 62

Query: 61 LEQEELL 68
          LEQEELL
Sbjct: 63 LEQEELL 69

[Close]

BLAST of ClCG04G005500.1 vs. NCBI nr
Match: gi|700198756|gb|KGN53914.1| (hypothetical protein Csa_4G188420 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 4.8e-12
Identity = 42/67 (62.69%), Postives = 46/67 (68.66%), Query Frame = 1


Query: 1  MGFVEKRRNQRRTSNKNVRKVKSEKEGEEDEDVGTEKGSGIRNYYIETRREEKEVKTRGH 60
          MGFVEK   +     +   KV S++E E DED  TEKGSGIR YYIE R EEKE KT GH
Sbjct: 3  MGFVEKGEIRDEQVTRTEEKVTSQEEEEGDEDERTEKGSGIRKYYIERRGEEKERKTGGH 62

Query: 61 LEQEELL 68
          LEQEELL
Sbjct: 63 LEQEELL 69

The following BLAST results are available for this feature:

BLAST of ClCG04G005500.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYK2_CUCSA	3.3e-12	62.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G188420 PE=4 SV=1	[more]

BLAST of ClCG04G005500.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198756\|gb\|KGN53914.1\|	4.8e-12	62.69	hypothetical protein Csa_4G188420 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG04G005500	ClCG04G005500	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG04G005500.1	ClCG04G005500.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG04G005500.1.cds1	ClCG04G005500.1.cds1	CDS