ClCG04G004810.1 (mRNA) Watermelon (Charleston Gray)

NameClCG04G004810.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionPlant RNA cleavage stimulation factor, putative
LocationCG_Chr04 : 18216788 .. 18221116 (+)
Sequence length447
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCAATGGAGTGTGTTCATCAATTAAAGTTTAACAAATTATTAGAACATCTTATTTAACTGACAAGCTGCAAACATAGGCTTTATTGTTTTAGCTTCTTGGATTGCTACTTATTTTTGCTCTTCTTCTTCAGCTAAGCAGACCAGTATAACTTATACGATCACAACTCTATTCACACGCACTCTCTTCATTATGGCATCCGAGGGTTCTGAATCAAAGGTACGCATGTTTTCAACCTCCTTTCCCTGGAGAAACGTTTCCTGATATTATGAGATTTTCGTGTAAATAATATGTTTAGAAACTAGTGGATTGTAAGGATGACTACGTGCAGCGAGGGCATGGTTGTTTAAAGGGAAAGATGGATCAGTTGATCCATGTTTGTAAGGTCGGCATAGGTGGAGTCCATTTCTTATATTGAGCCTAAAAATGTAGTTTTTGCCATGCAATTCTGTTCCATATTCTTACAATCGTCTTTGAATCGACAAGAGGAGAGGGGCTACCGTTTCTCAAGTGATTATAGAGTAAGGCGATTTCTAGGGTGATTGTGAAGTAAAAAGCCTATAGGGGTGTTGTGAAGGTAGTTGGTGTAAAAGAGGCAATAACATGGCAGTAAATGAGAAGAGTTTTGGTGTAGATGACAAGGAGCGTGGAATAGGGTACAAGAAAGATATGGGCGTTTAGGTAGTGATTGATTGGTTAGTTAGTTGAACAAGGGTAACTTGACACTTAAACACATGGAAGTAATGTATGAGTGAGTAGAGAAGGAGGTAGTAAGATTCTGATAGTTGGTGGGAGTTTGTTGTAAATTGTTATGCTTAGTATTACTCTAATTGGAATTGTGGCTGTCCGTGTTGACTTATTGGTATAATTAAATATACCGTAACCCATCATCTTAGGCTTTTGAGTTGATTGGTGATTTTGGTGATTTTCCATGGTATCAGAGCAGGAGATCATTATCCTTGTAATGTCATTTCCTCCCCAATTTATATTAATTTCTGCTTGGTGGGTCTTTTACAAAATTTCAAGCCCACAAGTTAGGGAGAGTTCAAGTATAGATACCATAACCCATTTATTTAAGTTTTTGGGTTTATTGGTGATTTATTGGTGATTTACACTCCACTTGATTTAGTCTGTATTGTAGAGTCCTAATTTTTCACGGTATTCTAGCAAAATTTCATGAGTTAAGGGTCTCAAGGAAAAGTAAGGGCAGTCTTCAAACAAAATCCAATTCTACTAGATAATAATTCATTTTTCAACTATTCAACCATTTCCCCTTCGAGAATTTATGATTAAGGTCAAAAGTTTTGATGAGTTTTATATTCTCTCTCCATTTCCTTTTGTAGTTATATCTCTAGGTATTTAATGCTGATTGGAGTGGTTCTTATGAGCTCTAGGATCGCTTTACTTTTTAGACTTCTGTTGACTATAGTGAAAAGTGTCTTTCTTAAGTAGAGTATTGTTGGTGGTGCTAAAATCTGTAACCACTTGTACAAAGATCCCCTTTTACACTATATCCAACACTTATGGTTGACTAAGGGTTGTTGTTGGATTGTCTCGATTCTCCTTGATGAGAAATCATTCTTTGTTGTCTTAGCCTTTGTCTTCCGTTGTCGGGTTTTAGCTATGCTTTATCTGATAGGGATACTCTGGATGTCATCGATCTCCTATGGATGATTGGCGGCTTTTGATGCAACTTTGGGAGAAGGGATATTCATGTCTAGGATCCTAGTCCTTCTAAAGGGTTCTCATGTAAATATCAATATCTAGAGGGTTTGGGAGGCTCCTAAGTGAGGTGTGGTTATGTATTAGGTTCAATGTCTTTTTGTGGGTGTTTGGGACTAAATTTTTCTGTCTGTTAAGTATTATTTTGTTAGATTGGAGGCCATTTTTGTAGGTTGCCTCCTATTTTGTGCCCGTGTATTCTTTCATTCATAGAAAAAAGGATTGTTGTTTAGTCTTGCAACCTTTCTCTTTGTGTTCTTTTTCTCAAGCTTAGTTAGCGTTTAATTTTTCTGTTAAAGCTTTGGTTTGAAAGAGTTCAATGGTCTTTACCGGATAAAGCCTCTTCATTGGATTGCTCTCTTTGTATTAGCACGGGTTCAAGCCTATTCATGTTAGATCTAGATTGATTTTATTTCTCCTACTTAGTCATTTTCTCCTTTTCTTCTCTTTGTATTTGTTTTGGTAATTTTAGATAATTTTGTTTTTTGTTTCTTGTAATTTGAGTATTAGTTTCTTTTAATTTTATCGATGAAAAGTTGTTTCCTTTTTTGTTTTTTGTTTTTGTTTTTGTTTTTTTTAAAATGAAAAAAAAAGGATTGTTGTTGGATTGATGCCTTTAGTACGTTTTTTTTAATCTAAGAAGAAGTTCAGAGGATTTCTTTCCTTTGTCTTTCAGTTTGGTACATTGTGTGTTCAACCTATTTATGCATGTAACTTCCATGTTCAGGATAAAACAACTAGCAATAAGCTTTTGGATGGTTTGAAGTACAATGTTGAAGTGGCAGAAACTGTTGCTAATGAGGCGCAGGTGTGATATCATCTTTAGTTTTCACATCACATCACATCCCTCCCCCTTTCTCAGTCAAGTTTAAATTTCGGTTTCCTCTTTGATTTAACACTGAATCCAATTATTTCCTGTTAGCGTTTGCCAATATTGGAGGCAACACCATTATATGAGCAACTGCTGACGGTGTACCCCACTGCTGTGAGTTCCTTTCGTATTTCAATCTTTTTCTGTCTACCTTCACTTAGAGTAGCTGCATTTTGAAATTTGAACCTTGTTTATTGCTGGGTTTGTGAGCAGAAATAGAGTAACTATTTCATGGGCTCAGCTAATGCTGGTTAGTACTCCTTATATTTTTTTAGCATGTGACGATTATTCTTTTGACATTTTATATTCCTTTGAAAACTTAGGTGACAACCAAGTCTTGAAAATTAGATAGATTTTAGATTAATCAATTTTAATATCATTAGATGTAACTTAGAAAAATATCAAATAACTAATATTGCTTCTACCGAAATAATTATTTTTGGAACCAAGAGTGGTGTACACAGCAGAGTGGGGCAAGGTTGCGTATCCTCTCCCTCTAAATGCCAATAAGAATTATTATAATAAATATCTCCAACTGGCTTGAATTAGGAAAGGGAAATAATTAGAGAAGGATCTAGACAAGGACTGCCATGTAGCAGGAATGAAATACGCCAGTTGTTTAATTTTCTTCTGCCTGGCTGGTCATTCGGCACGTAAGAATCTTTGTCCATTGTGCTTGGTATGGTTGCATTTTGGTAGGTTGTAATTGCACAGATGATAGATGACAGAGATTGTTTCTTTGCAAATACTGTAATCTGAGATAGAATTAACAATTAAGGATTGCTTCAAAGAAGTTGTAGTAGCTTATGGATATTTATAGACTTTACAAACTGGATAGAATCAATGAGCGGTGTTGATTCTACGAGTGTTGCTTGTCTGTCTCTAAGCTTGAATTGGAGATGTGAGTATAATGTCATATCAATGGAAAGTTCATGATTTTCCTGTTTGGGGATGTATAAATCTTCCAATATCGTGTGTTCATGTTCTTTGTGTTTGTCTATGTGGACACGTTTTCCTACTTAATCACCTAATTTGTTAGTTTCTCAGCTGGTCTCACTCATACACGGAAAAGTAGTTCTTTCTTTTTAGTTGGATGTAACTCTATGTACTTTTAGATTCTATCAATGCGCTAACCATTTTCTTCAGGCAAAATATTGGAAGCAATACGTGGAGGCACACATGGTTGTAAATAATGACGATGCTACAAAACAGATATTTAGCCGATGCTTATTGAACTGTCTACACATCCCTCTTTGGTATGATTGTTGTTTCACTTTCACCTATTAGTCATTTTTTTGAAAAGAAAACAACGCTTTTCATTGATGAAAAGAGAAGGGACTAATGCTCAAATTACAATGAAACAAAGAAACAAAGAAACAAAAAATAGCAATTACAACCAACACAACCAAATACAACCAATGATAGCACTTGAAAAGAAATAGAAAACCTTTGATTTCGACTAAACAGAATGCTCCAAGAACAAAAGACACCATTTCAACCAATAACAAATCTTTGAACTGATGAGGCAGATGAAAACCTTAAGGCCTCAGGATGGGCATAACTTAATGCTAGAACCAAGATGCAAAATTCCACATAACACTCAAGAAAGTCTTGCTGTGAAAACTGAAGATATTCTTTCACAACTAACTTCAAAAGATGAACTAAAACTCTTGCAACAACTCTGGAAGAAGCCGAATCTGCACAAAGAGCAAGAATTAGTTATTAGTGGATGA

mRNA sequence

ATGAAGCAATGGACTAAGCAGACCAGTATAACTTATACGATCACAACTCTATTCACACGCACTCTCTTCATTATGGCATCCGAGGGTTCTGAATCAAAGGATAAAACAACTAGCAATAAGCTTTTGGATGGTTTGAAGTACAATGTTGAAGTGGCAGAAACTGTTGCTAATGAGGCGCAGCGTTTGCCAATATTGGAGGCAACACCATTATATGAGCAACTGCTGACGGTGTACCCCACTGCTATGAAAACCTTAAGGCCTCAGGATGGGCATAACTTAATGCTAGAACCAAGATGCAAAATTCCACATAACACTCAAGAAAGTCTTGCTGTGAAAACTGAAGATATTCTTTCACAACTAACTTCAAAAGATGAACTAAAACTCTTGCAACAACTCTGGAAGAAGCCGAATCTGCACAAAGAGCAAGAATTAGTTATTAGTGGATGA

Coding sequence (CDS)

ATGAAGCAATGGACTAAGCAGACCAGTATAACTTATACGATCACAACTCTATTCACACGCACTCTCTTCATTATGGCATCCGAGGGTTCTGAATCAAAGGATAAAACAACTAGCAATAAGCTTTTGGATGGTTTGAAGTACAATGTTGAAGTGGCAGAAACTGTTGCTAATGAGGCGCAGCGTTTGCCAATATTGGAGGCAACACCATTATATGAGCAACTGCTGACGGTGTACCCCACTGCTATGAAAACCTTAAGGCCTCAGGATGGGCATAACTTAATGCTAGAACCAAGATGCAAAATTCCACATAACACTCAAGAAAGTCTTGCTGTGAAAACTGAAGATATTCTTTCACAACTAACTTCAAAAGATGAACTAAAACTCTTGCAACAACTCTGGAAGAAGCCGAATCTGCACAAAGAGCAAGAATTAGTTATTAGTGGATGA

Protein sequence

MKQWTKQTSITYTITTLFTRTLFIMASEGSESKDKTTSNKLLDGLKYNVEVAETVANEAQRLPILEATPLYEQLLTVYPTAMKTLRPQDGHNLMLEPRCKIPHNTQESLAVKTEDILSQLTSKDELKLLQQLWKKPNLHKEQELVISG
BLAST of ClCG04G004810.1 vs. TrEMBL
Match: A0A0A0L2S4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G593920 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-21
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 1

Query: 25 MASEGSESKDKTTSNKLLDGLKYNVEVAETVANEAQRLPILEATPLYEQLLTVYPTAMKT 84
          MASEGS+SKDKTTSNKLLDGLKYNVEVAE+VANEAQRLPILEATPLYEQLLTVYPTA + 
Sbjct: 1  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAERE 60

Query: 85 L 86
          +
Sbjct: 61 M 61

BLAST of ClCG04G004810.1 vs. TrEMBL
Match: V7C004_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G051000g PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-07
Identity = 38/97 (39.18%), Postives = 52/97 (53.61%), Query Frame = 1

Query: 39  NKLLDGLKYNVEVAETVANEAQRLPILEATPLYEQLLTVYPTAMKTLRPQDGHNLMLEPR 98
           +K+  G KYN+E AE +ANEAQ LP+ EATP+YEQLL ++PTA K  R            
Sbjct: 2   DKISGGDKYNIETAEILANEAQHLPVAEATPIYEQLLLLFPTAAKFWR------------ 61

Query: 99  CKIPHNTQESLAVKTEDILSQLTSKDELKLLQ-QLWK 135
                  +  +A   +D   Q+ S+  L  LQ  LW+
Sbjct: 62  ----QYVEAHMATNNDDATKQIFSRCLLHCLQIPLWR 82

BLAST of ClCG04G004810.1 vs. TrEMBL
Match: I1N761_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G064500 PE=4 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 4.1e-07
Identity = 38/92 (41.30%), Postives = 49/92 (53.26%), Query Frame = 1

Query: 44  GLKYNVEVAETVANEAQRLPILEATPLYEQLLTVYPTAMKTLRPQDGHNLMLEPRCKIPH 103
           G KYNVE AE +ANEAQ LP+ EATP+YEQLL ++PTA K  R                 
Sbjct: 7   GDKYNVETAEILANEAQHLPVAEATPIYEQLLLLFPTAAKFWR----------------Q 66

Query: 104 NTQESLAVKTEDILSQLTSKDELKLLQ-QLWK 135
             +  +A   +D   Q+ S+  L  LQ  LW+
Sbjct: 67  YVEAHMAANNDDATKQIFSRCLLNCLQIPLWR 82

BLAST of ClCG04G004810.1 vs. TrEMBL
Match: A0A0B2SPV0_GLYSO (Cleavage stimulation factor subunit 3 OS=Glycine soja GN=glysoja_046212 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.1e-07
Identity = 38/92 (41.30%), Postives = 49/92 (53.26%), Query Frame = 1

Query: 44  GLKYNVEVAETVANEAQRLPILEATPLYEQLLTVYPTAMKTLRPQDGHNLMLEPRCKIPH 103
           G KYNVE AE +ANEAQ LP+ EATP+YEQLL ++PTA K  R                 
Sbjct: 7   GDKYNVETAEILANEAQHLPVAEATPIYEQLLLLFPTAAKFWR----------------Q 66

Query: 104 NTQESLAVKTEDILSQLTSKDELKLLQ-QLWK 135
             +  +A   +D   Q+ S+  L  LQ  LW+
Sbjct: 67  YVEAHMAANNDDATKQIFSRCLLNCLQIPLWR 82

BLAST of ClCG04G004810.1 vs. TrEMBL
Match: I3T6D8_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.1e-07
Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = 1

Query: 34 DKTTSNKLLDGLKYNVEVAETVANEAQRLPILEATPLYEQLLTVYPTAMK 84
          DKT+S     G KYNVE AE +ANEAQ LPI E+TP YEQLL ++PTA K
Sbjct: 2  DKTSSIDKTTGGKYNVETAEILANEAQILPIAESTPTYEQLLQLFPTAAK 51

BLAST of ClCG04G004810.1 vs. TAIR10
Match: AT1G17760.1 (AT1G17760.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 48.1 bits (113), Expect = 5.3e-06
Identity = 31/90 (34.44%), Postives = 43/90 (47.78%), Query Frame = 1

Query: 46  KYNVEVAETVANEAQRLPILEATPLYEQLLTVYPTAMKTLRPQDGHNLMLEPRCKIPHNT 105
           KY VE AE +A  A   PI +ATP+YEQLL++YPT+ +  +                   
Sbjct: 4   KYIVEEAEALAKRALHSPIAQATPIYEQLLSLYPTSARFWK----------------QYV 63

Query: 106 QESLAVKTEDILSQLTSKDELKLLQ-QLWK 135
           +  +AV  +D   Q+ S+  L  LQ  LW+
Sbjct: 64  EAQMAVNNDDATKQIFSRCLLTCLQVPLWQ 77

BLAST of ClCG04G004810.1 vs. NCBI nr
Match: gi|778695235|ref|XP_011653954.1| (PREDICTED: cleavage stimulation factor subunit 77 isoform X2 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 1

Query: 25 MASEGSESKDKTTSNKLLDGLKYNVEVAETVANEAQRLPILEATPLYEQLLTVYPTAMK 84
          MASEGS+SKDKTTSNKLLDGLKYNVEVAE+VANEAQRLPILEATPLYEQLLTVYPTA K
Sbjct: 1  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAAK 59

BLAST of ClCG04G004810.1 vs. NCBI nr
Match: gi|778695232|ref|XP_011653953.1| (PREDICTED: cleavage stimulation factor subunit 77 isoform X1 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 1

Query: 25 MASEGSESKDKTTSNKLLDGLKYNVEVAETVANEAQRLPILEATPLYEQLLTVYPTAMK 84
          MASEGS+SKDKTTSNKLLDGLKYNVEVAE+VANEAQRLPILEATPLYEQLLTVYPTA K
Sbjct: 1  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAAK 59

BLAST of ClCG04G004810.1 vs. NCBI nr
Match: gi|700199749|gb|KGN54907.1| (hypothetical protein Csa_4G593920 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 2.5e-21
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 1

Query: 25 MASEGSESKDKTTSNKLLDGLKYNVEVAETVANEAQRLPILEATPLYEQLLTVYPTAMKT 84
          MASEGS+SKDKTTSNKLLDGLKYNVEVAE+VANEAQRLPILEATPLYEQLLTVYPTA + 
Sbjct: 1  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAERE 60

Query: 85 L 86
          +
Sbjct: 61 M 61

BLAST of ClCG04G004810.1 vs. NCBI nr
Match: gi|659082815|ref|XP_008442046.1| (PREDICTED: cleavage stimulation factor subunit 3 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 5.5e-21
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 1

Query: 25 MASEGSESKDKTTSNKLLDGLKYNVEVAETVANEAQRLPILEATPLYEQLLTVYPTAMK 84
          MASEGS+SKDKTTSNKLLDGLKYNVEVAE+VA EAQRLPILEATPLYEQLLTVYPTA K
Sbjct: 1  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVATEAQRLPILEATPLYEQLLTVYPTAAK 59

BLAST of ClCG04G004810.1 vs. NCBI nr
Match: gi|1009163056|ref|XP_015899759.1| (PREDICTED: cleavage stimulation factor subunit 77 [Ziziphus jujuba])

HSP 1 Score: 67.4 bits (163), Expect = 2.4e-08
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 1

Query: 28 EGSESKDKTT-SNKLLDGLKYNVEVAETVANEAQRLPILEATPLYEQLLTVYPTAMK 84
          +G+E + KT+ SNK +D  KYNVE AE  ANEA RLPI EA P+YEQLLTV+PTA K
Sbjct: 3  DGTEPESKTSASNKDMDD-KYNVEAAEARANEALRLPITEAAPIYEQLLTVFPTAAK 58

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L2S4_CUCSA1.7e-2190.16Uncharacterized protein OS=Cucumis sativus GN=Csa_4G593920 PE=4 SV=1[more]
V7C004_PHAVU1.8e-0739.18Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G051000g PE=4 SV=1[more]
I1N761_SOYBN4.1e-0741.30Uncharacterized protein OS=Glycine max GN=GLYMA_19G064500 PE=4 SV=2[more]
A0A0B2SPV0_GLYSO4.1e-0741.30Cleavage stimulation factor subunit 3 OS=Glycine soja GN=glysoja_046212 PE=4 SV=... [more]
I3T6D8_LOTJA4.1e-0764.00Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT1G17760.15.3e-0634.44 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|778695235|ref|XP_011653954.1|1.1e-2194.92PREDICTED: cleavage stimulation factor subunit 77 isoform X2 [Cucumis sativus][more]
gi|778695232|ref|XP_011653953.1|1.1e-2194.92PREDICTED: cleavage stimulation factor subunit 77 isoform X1 [Cucumis sativus][more]
gi|700199749|gb|KGN54907.1|2.5e-2190.16hypothetical protein Csa_4G593920 [Cucumis sativus][more]
gi|659082815|ref|XP_008442046.1|5.5e-2193.22PREDICTED: cleavage stimulation factor subunit 3 [Cucumis melo][more]
gi|1009163056|ref|XP_015899759.1|2.4e-0864.91PREDICTED: cleavage stimulation factor subunit 77 [Ziziphus jujuba][more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG04G004810ClCG04G004810gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG04G004810.1ClCG04G004810.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG04G004810.1.cds1ClCG04G004810.1.cds1CDS
ClCG04G004810.1.cds2ClCG04G004810.1.cds2CDS
ClCG04G004810.1.cds3ClCG04G004810.1.cds3CDS
ClCG04G004810.1.cds4ClCG04G004810.1.cds4CDS
ClCG04G004810.1.cds5ClCG04G004810.1.cds5CDS