ClCG04G000340.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG04G000340.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Polychome, UV-B-insensitive 4
Location	CG_Chr04 : 1207633 .. 1210763 (-)
Sequence length	1275

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTCTCAAAGCAGCTCCATCTTCTTCCCTCTCATTTTTCAACTGCGCCTCACACAAGAGACCGCCTCCCACCAATCCACCGCCATTTTTTTTGGTCAAAGGTTAAACAATACTCCATTGAAGCCCACTGGAATCTCACGGTATGAATGAATTCCATCTTCCTTTTCTCCATTTTTTTTTTTTTAAACTTTTTTGAAGAATGTAGAAATCAAATGTAGGTTTTCTTTTAATTTTTGGGTTTAACTGAAAGATTCTGAGTTCTTCTTACTGTACACTTAGATTAGGGCTTCTCTTGCTCTCTTCTTCTTTGAAATGATTTTTTTCTTGCTTCTTCCTTTTGAAGTTCCATAATGTCGGAAGCAAGAGATAGATTGGAGAGGCAAGTGGATCATGCCGAGGTATTTGCTCGTCGGAGATCCGAAGGTATATTGGACGAGCAAGAAATGAATTCTCATTTGATAGGTACTCCGATTGCACGCGCTACAACGACGCCTACTGCTCAACAAAGACCTACGAATCCCGGCCCTGGTGGAGGTGGTTCGAATCCCAGACGCACTTTTGGTTCTCCCATTTCTGGTGGAATTGGACGTAATAGATTTCTTTACAGATCTCCAGTGTTTAACCGCGAGAATACGGCGGCTTCGAGTTCCCGGCGGAATAGATCTCGGGGTAGAAACAGTGTGTTACCGATTTGGTACCCAAGAACCCCTCTCCGCGACATAACTGCAGTTGTGAGGGTAATGACTAATTCCCCTGTTACTTTGATATTGTTCTGCTAAATCTTTCGAAATCTTTCAATTTTTTGGTTTATTGTGCATTTGATTCATATTGTTTATGGAAAACCTATTCTCATTGTTATCACATATGGTCTTTGGTATGCATATACGTACGTACTCCAATAGCTGTAAGATTTGTTCTCTGATACAGTATATTTGTTGGATTTGTTCTAATTTGAATTTGCTTGATCTTCCGGAAACCCCCTTTTGATTTTTCTGGTGTAGTCGTTGTGATTCTTGTTTCTGTTTTTCAGTTGGTAAGCATTTGTTTTGATTTGATTTAATTGAATTGATTTTTAACCAAAAATGTCATTGCATATGTTTAATCCTTTTTTGAGAATCCTCAGATTGGATCACTTTCCTTTCTCTTTAAGTTAATTAATGAATAAATTTTCAGTGTTTTTAAGCTATGTACTACCTACCTGTTTGTCTAAAAAGAAGATTCTTTTGGTTTTGTAACATCCATGCCCAATGATTTCATATGAAACATCAACAGTCTGGATAATGAGATCCTGTCCACCATTAATTAAAGTTAACATAATTCGTCTCCTTTTTAGTTTTTATATTCATTGTTTTCTTGGATTCCAATCGGTTTTTAGGCCTCATTTTCAGCTGTTATTAGAAATACTTTTTGGTGGGCTCAATATGCTTCGGCTGGTTACTAGGATGTGCTGACTAGGTAGTCCAATCAACATTTTGGGCCTATGTTAAAGCTGTGATTTGGATGCAAATTGCTGATTTAGTAGCCAATAAATTTTTTTAAAAATTATGTTTGAAAAGCATATTAACACTGATGTTATCGTTACTTGTGGGACATGTGTAGAATGCTTATTAAAGCATGCGTTGACACTTGTAAACTACTTGACCTGACGTTTCAATGTAGTAATATTAATTAATTTATTTTGTTTGAAAAGTTTAATGGACGGAAAAATATATACTTTGAGTGAAAAATATCAAATTAATTTTTCAAGCATTTAGGTGCATATATATTATTGACCTTAAATTTGTTAAGATCACAGAATTCCTTTTTAAATAACATATTGTAAGACATTATGCATCACTCTTTCTCAGATATTCTCATGCACTTGAAGCAAACTATTATAAGTAAAAGTCTTTGTAATGTATAAAAATGATTATATGATTTTAAAAAAATGTATAAAGTAAATGTGCCATTGCTTTTGGTGTCCTCATTTTTCAACAAATATCATATCACGTTATAATGCATCATGTCTTCTCCATGTCACGTGTTTGTGTCTGTTGTACCATTCATCTTAAATCTTTACTACTTTTTAAGTTGATTCACTGATAATTTTGCTGTCAACGGTAAACATTCCCTCTGTCTTTTAGAAGTCTTCTTTCAACTATGTTCTTTCACTAATCAAAGCGAATTCTGTTTCAAGCATTGCATCTAGACTCCAAGTTCTTTCCTTTCCAAATGTTCCAACTTATTTTGTTTTATCCTGCACGTGGGCATTTGGATATTTAGTTACTGCTCCATGTTATTCAATATCACCTGTGTTTTCCATAGAAATCTCCTTTCCTAGTTTTTCATTTGAGGCAATTGAAAGGTCATTTAGTTAATATGGAGAGAATGTTATTGTTTTTTGTAATCAGGCAATTGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAATAGTCCTGCTCCCTCGGACGAAAGAGCTTTAGAGTATAGCGTGTCTGTGGCAGGTGATCATCAAGAGCCAAGCATTTCTCTGGTCACCCCAAAACCAACCGTAGGTAAAGTTCCAAAGATAATTCTTGGAATCGCGAATCAGAATGTGGTAGGGGCCGAGACTCTCACTCCCCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAATTGCAGAAATTGAAAAAAACTCCCAGTGCGAAGAAAGCAGAGAGGGAGAAAAGGGTTCGTACTTTAATGTCGTTTCGTTGATTCATTTCAACACGAACACATTCCCTGAATTCTTTTGGCAATCATCAGACTTAACTCAGCAACTTTAGGATGAATCATCTGCTGATGATTACTTTGGTAAAGAGCGCCCATTGATCAGAGGGAGGGAGAAGGAGAAGGAGAGATCCTCATCTTCTGATGAGATCTCATCTCTGGGGAGGATTATGTGTTAGTTTGGTTTCCAAAATGAATCCTTTTCATTTACAAAAAAAAAAAATAATAAAAAAGAAAAAAAAAGAAAAACCATCTTTGCTTCTTTCAGATGTTCAGTAGTAGTAAGCTTTTACAATATATAGGGTATTTTGTTGTTGTAGGGTCTGCCTTTGTTTACTACAGATTATAGATATAGCTAAAGCAGGC

mRNA sequence

TTCTCTCAAAGCAGCTCCATCTTCTTCCCTCTCATTTTTCAACTGCGCCTCACACAAGAGACCGCCTCCCACCAATCCACCGCCATTTTTTTTGGTCAAAGGTTAAACAATACTCCATTGAAGCCCACTGGAATCTCACGTTCCATAATGTCGGAAGCAAGAGATAGATTGGAGAGGCAAGTGGATCATGCCGAGGTATTTGCTCGTCGGAGATCCGAAGGTATATTGGACGAGCAAGAAATGAATTCTCATTTGATAGGTACTCCGATTGCACGCGCTACAACGACGCCTACTGCTCAACAAAGACCTACGAATCCCGGCCCTGGTGGAGGTGGTTCGAATCCCAGACGCACTTTTGGTTCTCCCATTTCTGGTGGAATTGGACGTAATAGATTTCTTTACAGATCTCCAGTGTTTAACCGCGAGAATACGGCGGCTTCGAGTTCCCGGCGGAATAGATCTCGGGGTAGAAACAGTGTGTTACCGATTTGGTACCCAAGAACCCCTCTCCGCGACATAACTGCAGTTGTGAGGGCAATTGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAATAGTCCTGCTCCCTCGGACGAAAGAGCTTTAGAGTATAGCGTGTCTGTGGCAGGTGATCATCAAGAGCCAAGCATTTCTCTGGTCACCCCAAAACCAACCGTAGGTAAAGTTCCAAAGATAATTCTTGGAATCGCGAATCAGAATGTGGTAGGGGCCGAGACTCTCACTCCCCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAATTGCAGAAATTGAAAAAAACTCCCAGTGCGAAGAAAGCAGAGAGGGAGAAAAGGGTTCGTACTTTAATGTCGTTTCGTTGATTCATTTCAACACGAACACATTCCCTGAATTCTTTTGGCAATCATCAGACTTAACTCAGCAACTTTAGGATGAATCATCTGCTGATGATTACTTTGGTAAAGAGCGCCCATTGATCAGAGGGAGGGAGAAGGAGAAGGAGAGATCCTCATCTTCTGATGAGATCTCATCTCTGGGGAGGATTATGTGTTAGTTTGGTTTCCAAAATGAATCCTTTTCATTTACAAAAAAAAAAAATAATAAAAAAGAAAAAAAAAGAAAAACCATCTTTGCTTCTTTCAGATGTTCAGTAGTAGTAAGCTTTTACAATATATAGGGTATTTTGTTGTTGTAGGGTCTGCCTTTGTTTACTACAGATTATAGATATAGCTAAAGCAGGC

Coding sequence (CDS)

TTCTCTCAAAGCAGCTCCATCTTCTTCCCTCTCATTTTTCAACTGCGCCTCACACAAGAGACCGCCTCCCACCAATCCACCGCCATTTTTTTTGGTCAAAGGTTAAACAATACTCCATTGAAGCCCACTGGAATCTCACGTTCCATAATGTCGGAAGCAAGAGATAGATTGGAGAGGCAAGTGGATCATGCCGAGGTATTTGCTCGTCGGAGATCCGAAGGTATATTGGACGAGCAAGAAATGAATTCTCATTTGATAGGTACTCCGATTGCACGCGCTACAACGACGCCTACTGCTCAACAAAGACCTACGAATCCCGGCCCTGGTGGAGGTGGTTCGAATCCCAGACGCACTTTTGGTTCTCCCATTTCTGGTGGAATTGGACGTAATAGATTTCTTTACAGATCTCCAGTGTTTAACCGCGAGAATACGGCGGCTTCGAGTTCCCGGCGGAATAGATCTCGGGGTAGAAACAGTGTGTTACCGATTTGGTACCCAAGAACCCCTCTCCGCGACATAACTGCAGTTGTGAGGGCAATTGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAATAGTCCTGCTCCCTCGGACGAAAGAGCTTTAGAGTATAGCGTGTCTGTGGCAGGTGATCATCAAGAGCCAAGCATTTCTCTGGTCACCCCAAAACCAACCGTAGGTAAAGTTCCAAAGATAATTCTTGGAATCGCGAATCAGAATGTGGTAGGGGCCGAGACTCTCACTCCCCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAATTGCAGAAATTGAAAAAAACTCCCAGTGCGAAGAAAGCAGAGAGGGAGAAAAGGGTTCGTACTTTAATGTCGTTTCGTTGA

Protein sequence

FSQSSSIFFPLIFQLRLTQETASHQSTAIFFGQRLNNTPLKPTGISRSIMSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTPIARATTTPTAQQRPTNPGPGGGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTPKPTVGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVMEELQKLKKTPSAKKAEREKRVRTLMSFR

Homology

[Close]

BLAST of ClCG04G000340.1 vs. Swiss-Prot
Match: PYM_ARATH (Protein POLYCHOME OS=Arabidopsis thaliana GN=PYM PE=1 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.3e-56
Identity = 132/261 (50.57%), Postives = 161/261 (61.69%), Query Frame = 1


Query: 50  MSEARDRLERQVDHAEVFARRRSEGIL-DEQEMNSHLIGTPIARATTTPTAQQRPTNPGP 109
           M EARDR+ERQVD+   F  RRS GIL DE     +L G+P+ R  +  T        G 
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 110 -GGGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPR 169
             G G   R  FG   +GG  R +  +RSP   REN +   +RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSPQ-GRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 170 TPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTP 229
           TPLRDI+AVVRAIER RAR+ E  G+  + +P P     L+  V ++G H E   S+VTP
Sbjct: 121 TPLRDISAVVRAIERRRARMGEGVGRDIE-TPTPQQLGVLDSLVPLSGAHLEHDYSMVTP 180

Query: 230 KPTVG----------KVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVMEELQKLK 289
            P++G          KV +I+L I  +N    + LTP+KKLLNSIDKVEKVVMEE+QK+K
Sbjct: 181 GPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKMK 240

Query: 290 KTPSAKKAEREKRVRTLMSFR 299
            TPSAK+AEREKRVRTLMS R
Sbjct: 241 STPSAKRAEREKRVRTLMSMR 259

[Close]

BLAST of ClCG04G000340.1 vs. Swiss-Prot
Match: GIG1_ARATH (Protein GIGAS CELL1 OS=Arabidopsis thaliana GN=GIG1 PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.3e-39
Identity = 116/266 (43.61%), Postives = 142/266 (53.38%), Query Frame = 1


Query: 50  MSEARDRLERQVDHAEVFARRRSEGIL-DEQEMNSHLIGTPIARATTTPTAQQRPTNPGP 109
           M EARDR ER VD++ +FA RR  GIL DE +    LI +P+            P     
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLIESPV-----------NPDIGSI 60

Query: 110 GGGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRT 169
           GG G   R  F +   G        +R P   REN    ++RR R  G   +LP WYPRT
Sbjct: 61  GGTGGLVRGNFTTWRPGNGRGGHTPFRLPQ-GRENMPIVTARRGRGGG---LLPSWYPRT 120

Query: 170 PLRDITAVVRAIERTRARLRENEGQGSDNS-----PAPSDERALEYSVSVAGDHQEPSIS 229
           PLRDIT +VRAIER     R   G G D+      P       LE  V ++G+H+    S
Sbjct: 121 PLRDITHIVRAIER-----RRGAGTGGDDGRVIEIPTHRQVGVLESPVPLSGEHK---CS 180

Query: 230 LVTPKPTVG----------KVPKIILGIANQNVVG-AETLTPQKKLLNSIDKVEKVVMEE 289
           +VTP P+VG          KV K++L I  +     A  +TP+KKLLNSIDKVEK+VM E
Sbjct: 181 MVTPGPSVGFKRSCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAE 240

Query: 290 LQKLKKTPSAKKAEREKRVRTLMSFR 299
           +QKLK TP AK+ EREKRVRTLM+ R
Sbjct: 241 IQKLKSTPQAKREEREKRVRTLMTMR 243

[Close]

BLAST of ClCG04G000340.1 vs. TrEMBL
Match: A0A0A0KY99_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152290 PE=4 SV=1)

HSP 1 Score: 469.5 bits (1207), Expect = 2.9e-129
Identity = 238/262 (90.84%), Postives = 250/262 (95.42%), Query Frame = 1


Query: 37  NTPLKPTGISRSIMSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTPIARATTT 96
           NTP KPTGISRSIMSEARDRLERQVD+AEVFARRRSEGILDEQEM S+LIGTPIARATTT
Sbjct: 52  NTPFKPTGISRSIMSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTT 111

Query: 97  PTAQQRPTNPGPGGGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRG 156
            TAQQRPTNPGPGGGG+N RRTFGSPISGGIGRNRFLYR+PV +REN +A SSRR+RSRG
Sbjct: 112 NTAQQRPTNPGPGGGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRG 171

Query: 157 RNSVLPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGD 216
           RNSVLPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSD+SPAPSDERALEYSVSVA D
Sbjct: 172 RNSVLPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASD 231

Query: 217 HQEPSISLVTPKPTVGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVMEELQKL 276
           HQEP ISL+TPKPTVGKVPKI+ GIAN+N VGAE LTPQKKLLNSIDKVEKVVMEELQKL
Sbjct: 232 HQEPIISLLTPKPTVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKL 291

Query: 277 KKTPSAKKAEREKRVRTLMSFR 299
           K+TPSAKKAEREKRVRTLMSFR
Sbjct: 292 KRTPSAKKAEREKRVRTLMSFR 313

[Close]

BLAST of ClCG04G000340.1 vs. TrEMBL
Match: F6HL68_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07790 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.5e-56
Identity = 147/267 (55.06%), Postives = 171/267 (64.04%), Query Frame = 1


Query: 50  MSEARDRLERQVDHAEVFARRRSE--GIL-DEQEMNSHLIGTPIARATTTPTAQ---QRP 109
           M E+RDRL R  D AE+F RRRS   GIL D  E +S+L  +P  R TTT T     +  
Sbjct: 1   MPESRDRLSRPEDIAELFLRRRSGILGILADGSERSSNLFASPSRRETTTRTTTLGARGA 60

Query: 110 TNPGPGGGGSNPRRTFGSP-ISGGIGRNRFLYRSPVFNRENTAASSS-RRNRSRGRNSVL 169
           T      GG   R  FG+P I  G GR R +YRSP+F RENT A+ S RR R R  NSVL
Sbjct: 61  TGILASRGGGVGRGGFGTPRIGTGRGRGRAVYRSPLFGRENTPATGSGRRGRGRSGNSVL 120

Query: 170 PIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQ-EP 229
           P WYPRTPLRDIT VVRAIER RARLRE +GQ  D  P P D   +   +      Q E 
Sbjct: 121 PSWYPRTPLRDITHVVRAIERRRARLREIDGQQID-IPIPQDISDVHDPILPPSSAQLEQ 180

Query: 230 SISLVTPKPT---------VGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVME 289
            IS+++P PT         VGKVPKI+L I +Q   G++ LTPQKKLLNSID VEK VM+
Sbjct: 181 DISMISPSPTSGMKLVPKAVGKVPKILLDITDQTGGGSDFLTPQKKLLNSIDTVEKAVMD 240

Query: 290 ELQKLKKTPSAKKAEREKRVRTLMSFR 299
           EL KLK+TPSAK+AE+EKRVRTLMS R
Sbjct: 241 ELGKLKRTPSAKRAEQEKRVRTLMSMR 266

[Close]

BLAST of ClCG04G000340.1 vs. TrEMBL
Match: D7LI35_ARALL (Polychome, UV-B-insensitive 4 OS=Arabidopsis lyrata subsp. lyrata GN=UVI4 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.5e-53
Identity = 129/260 (49.62%), Postives = 161/260 (61.92%), Query Frame = 1


Query: 50  MSEARDRLERQVDHAEVFARRRSEGIL-DEQEMNSHLIGTPIARATTTPTAQQRPTNPGP 109
           M EARDR+ER VD+   F  RRS GIL DE   + +L G+P+ R  +  T          
Sbjct: 1   MPEARDRIERPVDYPAAFLNRRSHGILLDEPATHHNLFGSPVQRVPSEATGLGSVGQGSM 60

Query: 110 GGGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRT 169
            G G   R  FG   +GG  R +  +RSP   REN +   +RR R+R  NSVLP WYPRT
Sbjct: 61  MGRGGLVRGNFGIRRTGGGRRGQIQFRSPQ-GRENMSLGVTRRGRARASNSVLPSWYPRT 120

Query: 170 PLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTPK 229
           PLRD++AVVRA+ER RAR+ E  G+  + +P P     L+  V ++G   E   S+VTP 
Sbjct: 121 PLRDVSAVVRAVERRRARMGEGVGRDIE-TPTPQQLGVLDSLVPLSGAQLEHDYSMVTPG 180

Query: 230 PTVG----------KVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVMEELQKLKK 289
           P+VG          KV +I+L I  +N    + LTPQKKLLNSIDKVEKVVMEE+QK+K 
Sbjct: 181 PSVGFKRPWPPSTAKVHQILLDITRENTGEEDALTPQKKLLNSIDKVEKVVMEEIQKMKS 240

Query: 290 TPSAKKAEREKRVRTLMSFR 299
           TPSAK+AEREKRVRTLMS R
Sbjct: 241 TPSAKRAEREKRVRTLMSMR 258

[Close]

BLAST of ClCG04G000340.1 vs. TrEMBL
Match: V4LQQ2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017150mg PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 7.7e-53
Identity = 129/260 (49.62%), Postives = 160/260 (61.54%), Query Frame = 1


Query: 50  MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSH-LIGTPIARATTTPTAQQRPTNPGP 109
           M EARDR+ER VD+   F  RRS GIL +  +  H L G+P+ R  + P           
Sbjct: 1   MPEARDRIERPVDYPAAFLSRRSNGILHDDPVTQHSLFGSPVQRVPSEPVI--------- 60

Query: 110 GGGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRT 169
            G G   R  FG   +GG  R +  +RSP   REN +   +RR R+R   SVLP WYPRT
Sbjct: 61  -GRGGLVRGNFGIRRTGGGRRGQTQFRSPQ-GRENMSLGVARRGRARASTSVLPSWYPRT 120

Query: 170 PLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTPK 229
           PLRD++ VVRAIER RAR+ E  G+  + +P P     L+  V ++G   E + S+VTP 
Sbjct: 121 PLRDVSGVVRAIERRRARMGEGVGRDIE-TPTPQQLGVLDSLVPLSGAQLEHNYSMVTPG 180

Query: 230 PTVG----------KVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVMEELQKLKK 289
           P+VG          KV KI+L I  +N    E+LTPQKKLLNSIDKVEKVVMEE+QK+K 
Sbjct: 181 PSVGFKRPWPPSAAKVHKILLDITRENTGEEESLTPQKKLLNSIDKVEKVVMEEIQKMKS 240

Query: 290 TPSAKKAEREKRVRTLMSFR 299
           TPSAK+AEREKRVRTLMS R
Sbjct: 241 TPSAKRAEREKRVRTLMSMR 248

[Close]

BLAST of ClCG04G000340.1 vs. TrEMBL
Match: R0HDW2_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10023892mg PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.3e-52
Identity = 127/260 (48.85%), Postives = 159/260 (61.15%), Query Frame = 1


Query: 50  MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSH-LIGTPIARATTTPTAQQRPTNPGP 109
           M EARDR+ER VD+   F  RRS G+L ++    H L G+P+ R     T          
Sbjct: 1   MPEARDRIERPVDYPAAFLNRRSNGVLLDEPATQHSLFGSPVQRVPPEATGLGSIGQGSM 60

Query: 110 GGGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRT 169
            G G   R  FG   +GG  R +  +RSP   RENT+   +RR R+R   SVLP WYPRT
Sbjct: 61  TGRGGLVRGNFGIRRTGGGRRGQIQFRSPQ-GRENTSLGVTRRGRARAATSVLPSWYPRT 120

Query: 170 PLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTPK 229
           PLRD+++VVRAIER RAR+ E  G+  + +P P     L+  V ++G   E   S+VTP 
Sbjct: 121 PLRDVSSVVRAIERRRARMGEGVGRDIE-TPTPQQLGVLDSLVPLSGAQLEHDYSMVTPG 180

Query: 230 PTVG----------KVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVMEELQKLKK 289
           P+VG          KV +I+L I  +N    + LTPQKKLLNSIDKVEKVVMEE+QK+K 
Sbjct: 181 PSVGFKRPWPPSTAKVHQILLDITRENTGEEDALTPQKKLLNSIDKVEKVVMEEIQKMKS 240

Query: 290 TPSAKKAEREKRVRTLMSFR 299
           TPSAK+AEREKRVRTLMS R
Sbjct: 241 TPSAKRAEREKRVRTLMSMR 258

[Close]

BLAST of ClCG04G000340.1 vs. TAIR10
Match: AT2G42260.1 (AT2G42260.1 uv-b-insensitive 4)

HSP 1 Score: 221.5 bits (563), Expect = 7.1e-58
Identity = 132/261 (50.57%), Postives = 161/261 (61.69%), Query Frame = 1


Query: 50  MSEARDRLERQVDHAEVFARRRSEGIL-DEQEMNSHLIGTPIARATTTPTAQQRPTNPGP 109
           M EARDR+ERQVD+   F  RRS GIL DE     +L G+P+ R  +  T        G 
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 110 -GGGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPR 169
             G G   R  FG   +GG  R +  +RSP   REN +   +RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSPQ-GRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 170 TPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTP 229
           TPLRDI+AVVRAIER RAR+ E  G+  + +P P     L+  V ++G H E   S+VTP
Sbjct: 121 TPLRDISAVVRAIERRRARMGEGVGRDIE-TPTPQQLGVLDSLVPLSGAHLEHDYSMVTP 180

Query: 230 KPTVG----------KVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVMEELQKLK 289
            P++G          KV +I+L I  +N    + LTP+KKLLNSIDKVEKVVMEE+QK+K
Sbjct: 181 GPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKMK 240

Query: 290 KTPSAKKAEREKRVRTLMSFR 299
            TPSAK+AEREKRVRTLMS R
Sbjct: 241 STPSAKRAEREKRVRTLMSMR 259

[Close]

BLAST of ClCG04G000340.1 vs. TAIR10
Match: AT3G57860.1 (AT3G57860.1 UV-B-insensitive 4-like)

HSP 1 Score: 162.9 bits (411), Expect = 3.0e-40
Identity = 116/266 (43.61%), Postives = 142/266 (53.38%), Query Frame = 1


Query: 50  MSEARDRLERQVDHAEVFARRRSEGIL-DEQEMNSHLIGTPIARATTTPTAQQRPTNPGP 109
           M EARDR ER VD++ +FA RR  GIL DE +    LI +P+            P     
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLIESPV-----------NPDIGSI 60

Query: 110 GGGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRT 169
           GG G   R  F +   G        +R P   REN    ++RR R  G   +LP WYPRT
Sbjct: 61  GGTGGLVRGNFTTWRPGNGRGGHTPFRLPQ-GRENMPIVTARRGRGGG---LLPSWYPRT 120

Query: 170 PLRDITAVVRAIERTRARLRENEGQGSDNS-----PAPSDERALEYSVSVAGDHQEPSIS 229
           PLRDIT +VRAIER     R   G G D+      P       LE  V ++G+H+    S
Sbjct: 121 PLRDITHIVRAIER-----RRGAGTGGDDGRVIEIPTHRQVGVLESPVPLSGEHK---CS 180

Query: 230 LVTPKPTVG----------KVPKIILGIANQNVVG-AETLTPQKKLLNSIDKVEKVVMEE 289
           +VTP P+VG          KV K++L I  +     A  +TP+KKLLNSIDKVEK+VM E
Sbjct: 181 MVTPGPSVGFKRSCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAE 240

Query: 290 LQKLKKTPSAKKAEREKRVRTLMSFR 299
           +QKLK TP AK+ EREKRVRTLM+ R
Sbjct: 241 IQKLKSTPQAKREEREKRVRTLMTMR 243

[Close]

BLAST of ClCG04G000340.1 vs. NCBI nr
Match: gi|700198666|gb|KGN53824.1| (hypothetical protein Csa_4G152290 [Cucumis sativus])

HSP 1 Score: 469.5 bits (1207), Expect = 4.2e-129
Identity = 238/262 (90.84%), Postives = 250/262 (95.42%), Query Frame = 1


Query: 37  NTPLKPTGISRSIMSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTPIARATTT 96
           NTP KPTGISRSIMSEARDRLERQVD+AEVFARRRSEGILDEQEM S+LIGTPIARATTT
Sbjct: 52  NTPFKPTGISRSIMSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTT 111

Query: 97  PTAQQRPTNPGPGGGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRG 156
            TAQQRPTNPGPGGGG+N RRTFGSPISGGIGRNRFLYR+PV +REN +A SSRR+RSRG
Sbjct: 112 NTAQQRPTNPGPGGGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRG 171

Query: 157 RNSVLPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGD 216
           RNSVLPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSD+SPAPSDERALEYSVSVA D
Sbjct: 172 RNSVLPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASD 231

Query: 217 HQEPSISLVTPKPTVGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVMEELQKL 276
           HQEP ISL+TPKPTVGKVPKI+ GIAN+N VGAE LTPQKKLLNSIDKVEKVVMEELQKL
Sbjct: 232 HQEPIISLLTPKPTVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKL 291

Query: 277 KKTPSAKKAEREKRVRTLMSFR 299
           K+TPSAKKAEREKRVRTLMSFR
Sbjct: 292 KRTPSAKKAEREKRVRTLMSFR 313

[Close]

BLAST of ClCG04G000340.1 vs. NCBI nr
Match: gi|659121757|ref|XP_008460799.1| (PREDICTED: protein POLYCHOME [Cucumis melo])

HSP 1 Score: 446.4 bits (1147), Expect = 3.8e-122
Identity = 226/249 (90.76%), Postives = 238/249 (95.58%), Query Frame = 1


Query: 50  MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTPIARATTTPTAQQRPTNPGPG 109
           MSEARDRLERQVD+AEVFARRRSEGILDEQEM S+LIGTPIARATTT  AQQRPTNPGPG
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 60

Query: 110 GGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRTP 169
           GGG+N RRTFGSPISGGIGRNRFLYR+PV +REN +A SSRR+RSRGRNSVLPIWYPRTP
Sbjct: 61  GGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 170 LRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTPKP 229
           LRDITAVVRAIERTRARLRENEGQGSD+SPAPSDERALEYSVSVA DHQEP ISL+TPKP
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 230 TVGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVMEELQKLKKTPSAKKAEREK 289
           TVGKVPKI+ GIAN+N VGAETLTPQKKLLNSIDKVEKVVMEELQKLK+TPSAKKAEREK
Sbjct: 181 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

Query: 290 RVRTLMSFR 299
           RVRTLMSFR
Sbjct: 241 RVRTLMSFR 249

[Close]

BLAST of ClCG04G000340.1 vs. NCBI nr
Match: gi|449464890|ref|XP_004150162.1| (PREDICTED: protein POLYCHOME [Cucumis sativus])

HSP 1 Score: 445.7 bits (1145), Expect = 6.5e-122
Identity = 226/249 (90.76%), Postives = 238/249 (95.58%), Query Frame = 1


Query: 50  MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTPIARATTTPTAQQRPTNPGPG 109
           MSEARDRLERQVD+AEVFARRRSEGILDEQEM S+LIGTPIARATTT TAQQRPTNPGPG
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 60

Query: 110 GGGSNPRRTFGSPISGGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPRTP 169
           GGG+N RRTFGSPISGGIGRNRFLYR+PV +REN +A SSRR+RSRGRNSVLPIWYPRTP
Sbjct: 61  GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 170 LRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTPKP 229
           LRDITAVVRAIERTRARLRENEGQGSD+SPAPSDERALEYSVSVA DHQEP ISL+TPKP
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 230 TVGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVMEELQKLKKTPSAKKAEREK 289
           TVGKVPKI+ GIAN+N VGAE LTPQKKLLNSIDKVEKVVMEELQKLK+TPSAKKAEREK
Sbjct: 181 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

Query: 290 RVRTLMSFR 299
           RVRTLMSFR
Sbjct: 241 RVRTLMSFR 249

[Close]

BLAST of ClCG04G000340.1 vs. NCBI nr
Match: gi|225441692|ref|XP_002277253.1| (PREDICTED: protein POLYCHOME [Vitis vinifera])

HSP 1 Score: 228.0 bits (580), Expect = 2.1e-56
Identity = 147/267 (55.06%), Postives = 171/267 (64.04%), Query Frame = 1


Query: 50  MSEARDRLERQVDHAEVFARRRSE--GIL-DEQEMNSHLIGTPIARATTTPTAQ---QRP 109
           M E+RDRL R  D AE+F RRRS   GIL D  E +S+L  +P  R TTT T     +  
Sbjct: 1   MPESRDRLSRPEDIAELFLRRRSGILGILADGSERSSNLFASPSRRETTTRTTTLGARGA 60

Query: 110 TNPGPGGGGSNPRRTFGSP-ISGGIGRNRFLYRSPVFNRENTAASSS-RRNRSRGRNSVL 169
           T      GG   R  FG+P I  G GR R +YRSP+F RENT A+ S RR R R  NSVL
Sbjct: 61  TGILASRGGGVGRGGFGTPRIGTGRGRGRAVYRSPLFGRENTPATGSGRRGRGRSGNSVL 120

Query: 170 PIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQ-EP 229
           P WYPRTPLRDIT VVRAIER RARLRE +GQ  D  P P D   +   +      Q E 
Sbjct: 121 PSWYPRTPLRDITHVVRAIERRRARLREIDGQQID-IPIPQDISDVHDPILPPSSAQLEQ 180

Query: 230 SISLVTPKPT---------VGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVME 289
            IS+++P PT         VGKVPKI+L I +Q   G++ LTPQKKLLNSID VEK VM+
Sbjct: 181 DISMISPSPTSGMKLVPKAVGKVPKILLDITDQTGGGSDFLTPQKKLLNSIDTVEKAVMD 240

Query: 290 ELQKLKKTPSAKKAEREKRVRTLMSFR 299
           EL KLK+TPSAK+AE+EKRVRTLMS R
Sbjct: 241 ELGKLKRTPSAKRAEQEKRVRTLMSMR 266

[Close]

BLAST of ClCG04G000340.1 vs. NCBI nr
Match: gi|1009106074|ref|XP_015868489.1| (PREDICTED: protein POLYCHOME-like [Ziziphus jujuba])

HSP 1 Score: 224.2 bits (570), Expect = 3.1e-55
Identity = 140/260 (53.85%), Postives = 165/260 (63.46%), Query Frame = 1


Query: 50  MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTPIARATTTPTA-QQRPTNPGP 109
           M E RDRL R VD A VF R RS G+++E +  S L G+P+ + TT  T   +R T  G 
Sbjct: 1   MPEPRDRLSRPVDVAAVFVRWRSRGVVNESDAASDLFGSPMRQQTTATTPIARRVTGFGA 60

Query: 110 GGGGSNPRRTFGSPIS-GGIGRNRFLYRSPVFNRENTAASSSRRNRSRGRNSVLPIWYPR 169
             GG   R  FG+P +    GRNR    S    RENT A ++RR R R  NSVLP WYPR
Sbjct: 61  TRGGGFGRGIFGTPRTVNRRGRNRPGSSSAA--RENTPAGTARRGRGRVTNSVLPSWYPR 120

Query: 170 TPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYSVSVAGDHQEPSISLVTP 229
           TPLRDITA+V AIER RARLR +EG   + +P   D   L+  VSV+    E  I + +P
Sbjct: 121 TPLRDITAIVTAIERRRARLRGDEGLQVE-TPIYQDPGVLDPPVSVSPAPLEQDIPIASP 180

Query: 230 K---------PTVGKVPKIILGIANQNVVGAETLTPQKKLLNSIDKVEKVVMEELQKLKK 289
                     P+VGKVPKI+LGI NQ    +E LTPQKKLLN+ID VEK V EELQKLK+
Sbjct: 181 STAVRKKGCPPSVGKVPKILLGITNQTTGESECLTPQKKLLNNIDTVEKAVKEELQKLKR 240

Query: 290 TPSAKKAEREKRVRTLMSFR 299
           TPSAKKAEREKRVRTLMS R
Sbjct: 241 TPSAKKAEREKRVRTLMSMR 257

The following BLAST results are available for this feature:

BLAST of ClCG04G000340.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PYM_ARATH	1.3e-56	50.57	Protein POLYCHOME OS=Arabidopsis thaliana GN=PYM PE=1 SV=1	[more]
GIG1_ARATH	5.3e-39	43.61	Protein GIGAS CELL1 OS=Arabidopsis thaliana GN=GIG1 PE=1 SV=1	[more]

BLAST of ClCG04G000340.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY99_CUCSA	2.9e-129	90.84	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152290 PE=4 SV=1	[more]
F6HL68_VITVI	1.5e-56	55.06	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07790 PE=4 SV=...	[more]
D7LI35_ARALL	1.5e-53	49.62	Polychome, UV-B-insensitive 4 OS=Arabidopsis lyrata subsp. lyrata GN=UVI4 PE=4 S...	[more]
V4LQQ2_EUTSA	7.7e-53	49.62	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017150mg PE=4 SV=1	[more]
R0HDW2_9BRAS	1.3e-52	48.85	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10023892mg PE=4 SV=1	[more]

BLAST of ClCG04G000340.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42260.1	7.1e-58	50.57	uv-b-insensitive 4	[more]
AT3G57860.1	3.0e-40	43.61	UV-B-insensitive 4-like	[more]

BLAST of ClCG04G000340.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198666\|gb\|KGN53824.1\|	4.2e-129	90.84	hypothetical protein Csa_4G152290 [Cucumis sativus]	[more]
gi\|659121757\|ref\|XP_008460799.1\|	3.8e-122	90.76	PREDICTED: protein POLYCHOME [Cucumis melo]	[more]
gi\|449464890\|ref\|XP_004150162.1\|	6.5e-122	90.76	PREDICTED: protein POLYCHOME [Cucumis sativus]	[more]
gi\|225441692\|ref\|XP_002277253.1\|	2.1e-56	55.06	PREDICTED: protein POLYCHOME [Vitis vinifera]	[more]
gi\|1009106074\|ref\|XP_015868489.1\|	3.1e-55	53.85	PREDICTED: protein POLYCHOME-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG04G000340	ClCG04G000340	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG04G000340.1	ClCG04G000340.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG04G000340.1.three_prime_UTR1	ClCG04G000340.1.three_prime_UTR1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG04G000340.1.cds3	ClCG04G000340.1.cds3	CDS
ClCG04G000340.1.cds2	ClCG04G000340.1.cds2	CDS
ClCG04G000340.1.cds1	ClCG04G000340.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 170..190 scor
None	No IPR available	PANTHER	PTHR35119	FAMILY NOT NAMED	coord: 119..298 score: 1.1E-48coord: 1..82 score: 1.1
None	No IPR available	PANTHER	PTHR35119:SF1	PROTEIN GIGAS CELL1-RELATED	coord: 1..82 score: 1.1E-48coord: 119..298 score: 1.1