ClCG03G012620.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G012620.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Phosphomannomutase
Location	CG_Chr03 : 25765188 .. 25765680 (-)
Sequence length	330

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTAACATTCTCCATTGGAGGGCAAATAAGCTTTGATGTAAGTAAAGTTTGATTTCAGCAGTATTATTGTAACACAAGTAAACAACATGACGGGTATGATTTCAGCAATGCTAATTATTCATTCACAGGTCTTTCCTCAAGGTTGGGACAAGACATATTGCCTGAGGTACCTTGAAGATTTTCAAGAAATCCACTTCTTCGGTGATAAAACTTACAAGGTTATTATTAGAATGTTTGTCTATCCATCTTTCTTGCAGCTTAGTTTTGGTTGGGTTTTCATTCTTTGGTTGTTATCTCTTATTTATAGTCTTGTAACTCATGTTCAGATCTAATCTTGCATGCCTGATTTTGCTTCTGAGTTGGAAAATATTATCCTTTTAGTGCTCCAACCAAATTCTCTGTTCTGCTATTTATACTGAGATATTTCTGCTGCCTTTACTTTTGAACAGGGAGGAAATGATCATGAAATTTATGAATCAGAACGAACTGTAG

mRNA sequence

ATTTAACATTCTCCATTGGAGGGCAAATAAGCTTTGATGTAAGTAAAGTTTGATTTCAGCAGTATTATTGTAACACAAGTAAACAACATGACGGGTATGATTTCAGCAATGCTAATTATTCATTCACAGGTCTTTCCTCAAGGTTGGGACAAGACATATTGCCTGAGGTACCTTGAAGATTTTCAAGAAATCCACTTCTTCGGTGATAAAACTTACAAGTGCTCCAACCAAATTCTCTGTTCTGCTATTTATACTGAGATATTTCTGCTGCCTTTACTTTTGAACAGGGAGGAAATGATCATGAAATTTATGAATCAGAACGAACTGTAG

Coding sequence (CDS)

ATGACGGGTATGATTTCAGCAATGCTAATTATTCATTCACAGGTCTTTCCTCAAGGTTGGGACAAGACATATTGCCTGAGGTACCTTGAAGATTTTCAAGAAATCCACTTCTTCGGTGATAAAACTTACAAGTGCTCCAACCAAATTCTCTGTTCTGCTATTTATACTGAGATATTTCTGCTGCCTTTACTTTTGAACAGGGAGGAAATGATCATGAAATTTATGAATCAGAACGAACTGTAG

Protein sequence

MTGMISAMLIIHSQVFPQGWDKTYCLRYLEDFQEIHFFGDKTYKCSNQILCSAIYTEIFLLPLLLNREEMIMKFMNQNEL

Homology

[Close]

BLAST of ClCG03G012620.1 vs. Swiss-Prot
Match: PMM_ORYSI (Phosphomannomutase OS=Oryza sativa subsp. indica GN=PMM PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.5e-12
Identity = 31/37 (83.78%), Postives = 30/37 (81.08%), Query Frame = 1


Query: 11  IHSQVFPQGWDKTYCLRYLEDFQEIHFFGDKTYKCSN 48
           I   VFPQGWDKTYCLRYLE+FQEIHFFGDKTYK  N
Sbjct: 180 ISFDVFPQGWDKTYCLRYLEEFQEIHFFGDKTYKGGN 216

[Close]

BLAST of ClCG03G012620.1 vs. Swiss-Prot
Match: PMM_ORYSJ (Phosphomannomutase OS=Oryza sativa subsp. japonica GN=PMM PE=2 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 2.5e-12
Identity = 31/37 (83.78%), Postives = 30/37 (81.08%), Query Frame = 1


Query: 11  IHSQVFPQGWDKTYCLRYLEDFQEIHFFGDKTYKCSN 48
           I   VFPQGWDKTYCLRYLE+FQEIHFFGDKTYK  N
Sbjct: 180 ISFDVFPQGWDKTYCLRYLEEFQEIHFFGDKTYKGGN 216

[Close]

BLAST of ClCG03G012620.1 vs. Swiss-Prot
Match: PMM_WHEAT (Phosphomannomutase OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.3e-12
Identity = 30/37 (81.08%), Postives = 30/37 (81.08%), Query Frame = 1


Query: 11  IHSQVFPQGWDKTYCLRYLEDFQEIHFFGDKTYKCSN 48
           I   VFPQGWDKTYCLRYLE+F+EIHFFGDKTYK  N
Sbjct: 181 ISFDVFPQGWDKTYCLRYLEEFKEIHFFGDKTYKGGN 217

[Close]

BLAST of ClCG03G012620.1 vs. Swiss-Prot
Match: PMM_TOBAC (Phosphomannomutase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 9.6e-12
Identity = 30/37 (81.08%), Postives = 29/37 (78.38%), Query Frame = 1


Query: 11  IHSQVFPQGWDKTYCLRYLEDFQEIHFFGDKTYKCSN 48
           I   VFPQGWDKTYCLRYLE+F EIHFFGDKTYK  N
Sbjct: 179 ISFDVFPQGWDKTYCLRYLEEFNEIHFFGDKTYKGGN 215

[Close]

BLAST of ClCG03G012620.1 vs. Swiss-Prot
Match: PMM_SOLLC (Phosphomannomutase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 9.6e-12
Identity = 30/37 (81.08%), Postives = 29/37 (78.38%), Query Frame = 1


Query: 11  IHSQVFPQGWDKTYCLRYLEDFQEIHFFGDKTYKCSN 48
           I   VFPQGWDKTYCLRYLE+F EIHFFGDKTYK  N
Sbjct: 179 ISFDVFPQGWDKTYCLRYLEEFNEIHFFGDKTYKGGN 215

[Close]

BLAST of ClCG03G012620.1 vs. TrEMBL
Match: A0A0D9WBB7_9ORYZ (Phosphomannomutase OS=Leersia perrieri PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-10
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 1


Query: 12  HSQVFPQGWDKTYCLRYLEDFQEIHFFGDKTYKCSN 48
           + +VFPQGWDKTYCLRYLE+FQEIHFFGDKTYK  N
Sbjct: 151 YDKVFPQGWDKTYCLRYLEEFQEIHFFGDKTYKGGN 186

[Close]

BLAST of ClCG03G012620.1 vs. TrEMBL
Match: A0A0D9WBB6_9ORYZ (Phosphomannomutase OS=Leersia perrieri PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-10
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 1


Query: 12  HSQVFPQGWDKTYCLRYLEDFQEIHFFGDKTYKCSN 48
           + +VFPQGWDKTYCLRYLE+FQEIHFFGDKTYK  N
Sbjct: 258 YDKVFPQGWDKTYCLRYLEEFQEIHFFGDKTYKGGN 293

[Close]

BLAST of ClCG03G012620.1 vs. TrEMBL
Match: I1PR14_ORYGL (Phosphomannomutase OS=Oryza glaberrima PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.8e-10
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 1


Query: 11  IHSQVFPQGWDKTYCLRYLEDFQEIHFFGDKTYKCSN 48
           I   VFPQGWDKTYCLRYLE+FQEIHFFGDKTYK  N
Sbjct: 180 ISFDVFPQGWDKTYCLRYLEEFQEIHFFGDKTYKGGN 216

[Close]

BLAST of ClCG03G012620.1 vs. TrEMBL
Match: A0A0B4U0M1_ORYSA (Phosphomannomutase (Fragment) OS=Oryza sativa GN=LOC_Os04g58580.1 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.8e-10
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 1


Query: 11  IHSQVFPQGWDKTYCLRYLEDFQEIHFFGDKTYKCSN 48
           I   VFPQGWDKTYCLRYLE+FQEIHFFGDKTYK  N
Sbjct: 180 ISFDVFPQGWDKTYCLRYLEEFQEIHFFGDKTYKGGN 216

[Close]

BLAST of ClCG03G012620.1 vs. TrEMBL
Match: C5YAM6_SORBI (Phosphomannomutase OS=Sorghum bicolor GN=Sb06g033280 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.8e-10
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 1


Query: 11  IHSQVFPQGWDKTYCLRYLEDFQEIHFFGDKTYKCSN 48
           I   VFPQGWDKTYCLRYLE+FQEIHFFGDKTYK  N
Sbjct: 181 ISFDVFPQGWDKTYCLRYLEEFQEIHFFGDKTYKGGN 217

[Close]

BLAST of ClCG03G012620.1 vs. TAIR10
Match: AT2G45790.1 (AT2G45790.1 phosphomannomutase)

HSP 1 Score: 67.4 bits (163), Expect = 4.6e-12
Identity = 28/37 (75.68%), Postives = 29/37 (78.38%), Query Frame = 1


Query: 11  IHSQVFPQGWDKTYCLRYLEDFQEIHFFGDKTYKCSN 48
           I   VFP+GWDKTYCL+YLEDF EIHFFGDKTY+  N
Sbjct: 179 ISFDVFPKGWDKTYCLQYLEDFSEIHFFGDKTYEGGN 215

[Close]

BLAST of ClCG03G012620.1 vs. NCBI nr
Match: gi|659129616|ref|XP_008464755.1| (PREDICTED: phosphomannomutase [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-10
Identity = 32/37 (86.49%), Postives = 32/37 (86.49%), Query Frame = 1


Query: 11  IHSQVFPQGWDKTYCLRYLEDFQEIHFFGDKTYKCSN 48
           I   VFPQGWDKTYCLRYLEDFQEIHFFGDKTYK  N
Sbjct: 179 ISFDVFPQGWDKTYCLRYLEDFQEIHFFGDKTYKGGN 215

[Close]

BLAST of ClCG03G012620.1 vs. NCBI nr
Match: gi|694442354|ref|XP_009347862.1| (PREDICTED: phosphomannomutase [Pyrus x bretschneideri])

HSP 1 Score: 72.8 bits (177), Expect = 3.1e-10
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 1


Query: 11  IHSQVFPQGWDKTYCLRYLEDFQEIHFFGDKTYKCSN 48
           I   VFPQGWDKTYCLRYL+DFQEIHFFGDKTYK  N
Sbjct: 179 ISFDVFPQGWDKTYCLRYLDDFQEIHFFGDKTYKGGN 215

[Close]

BLAST of ClCG03G012620.1 vs. NCBI nr
Match: gi|657968657|ref|XP_008376031.1| (PREDICTED: phosphomannomutase-like isoform X1 [Malus domestica])

HSP 1 Score: 72.8 bits (177), Expect = 3.1e-10
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 1


Query: 11  IHSQVFPQGWDKTYCLRYLEDFQEIHFFGDKTYKCSN 48
           I   VFPQGWDKTYCLRYL+DFQEIHFFGDKTYK  N
Sbjct: 139 ISFDVFPQGWDKTYCLRYLDDFQEIHFFGDKTYKGGN 175

[Close]

BLAST of ClCG03G012620.1 vs. NCBI nr
Match: gi|657968659|ref|XP_008376032.1| (PREDICTED: phosphomannomutase-like isoform X2 [Malus domestica])

HSP 1 Score: 72.8 bits (177), Expect = 3.1e-10
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 1


Query: 11  IHSQVFPQGWDKTYCLRYLEDFQEIHFFGDKTYKCSN 48
           I   VFPQGWDKTYCLRYL+DFQEIHFFGDKTYK  N
Sbjct: 179 ISFDVFPQGWDKTYCLRYLDDFQEIHFFGDKTYKGGN 215

[Close]

BLAST of ClCG03G012620.1 vs. NCBI nr
Match: gi|658058049|ref|XP_008364820.1| (PREDICTED: phosphomannomutase-like [Malus domestica])

HSP 1 Score: 72.8 bits (177), Expect = 3.1e-10
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 1


Query: 11  IHSQVFPQGWDKTYCLRYLEDFQEIHFFGDKTYKCSN 48
           I   VFPQGWDKTYCLRYL+DFQEIHFFGDKTYK  N
Sbjct: 346 ISFDVFPQGWDKTYCLRYLDDFQEIHFFGDKTYKGGN 382

The following BLAST results are available for this feature:

BLAST of ClCG03G012620.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PMM_ORYSI	2.5e-12	83.78	Phosphomannomutase OS=Oryza sativa subsp. indica GN=PMM PE=3 SV=1	[more]
PMM_ORYSJ	2.5e-12	83.78	Phosphomannomutase OS=Oryza sativa subsp. japonica GN=PMM PE=2 SV=2	[more]
PMM_WHEAT	7.3e-12	81.08	Phosphomannomutase OS=Triticum aestivum PE=2 SV=1	[more]
PMM_TOBAC	9.6e-12	81.08	Phosphomannomutase OS=Nicotiana tabacum PE=2 SV=1	[more]
PMM_SOLLC	9.6e-12	81.08	Phosphomannomutase OS=Solanum lycopersicum PE=2 SV=1	[more]

BLAST of ClCG03G012620.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D9WBB7_9ORYZ	1.6e-10	83.33	Phosphomannomutase OS=Leersia perrieri PE=3 SV=1	[more]
A0A0D9WBB6_9ORYZ	1.6e-10	83.33	Phosphomannomutase OS=Leersia perrieri PE=3 SV=1	[more]
I1PR14_ORYGL	2.8e-10	83.78	Phosphomannomutase OS=Oryza glaberrima PE=3 SV=1	[more]
A0A0B4U0M1_ORYSA	2.8e-10	83.78	Phosphomannomutase (Fragment) OS=Oryza sativa GN=LOC_Os04g58580.1 PE=2 SV=1	[more]
C5YAM6_SORBI	2.8e-10	83.78	Phosphomannomutase OS=Sorghum bicolor GN=Sb06g033280 PE=3 SV=1	[more]

BLAST of ClCG03G012620.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45790.1	4.6e-12	75.68	phosphomannomutase	[more]

BLAST of ClCG03G012620.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659129616\|ref\|XP_008464755.1\|	1.4e-10	86.49	PREDICTED: phosphomannomutase [Cucumis melo]	[more]
gi\|694442354\|ref\|XP_009347862.1\|	3.1e-10	83.78	PREDICTED: phosphomannomutase [Pyrus x bretschneideri]	[more]
gi\|657968657\|ref\|XP_008376031.1\|	3.1e-10	83.78	PREDICTED: phosphomannomutase-like isoform X1 [Malus domestica]	[more]
gi\|657968659\|ref\|XP_008376032.1\|	3.1e-10	83.78	PREDICTED: phosphomannomutase-like isoform X2 [Malus domestica]	[more]
gi\|658058049\|ref\|XP_008364820.1\|	3.1e-10	83.78	PREDICTED: phosphomannomutase-like [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005002	PMM
IPR023214	HAD_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0004615	phosphomannomutase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Biological Process**
Term	Definition
GO:0009298	GDP-mannose biosynthetic process

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009298	GDP-mannose biosynthetic process
biological_process	GO:0019853	L-ascorbic acid biosynthetic process
biological_process	GO:0006833	water transport
biological_process	GO:0019932	second-messenger-mediated signaling
biological_process	GO:0009266	response to temperature stimulus
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0010498	proteasomal protein catabolic process
biological_process	GO:0019307	mannose biosynthetic process
biological_process	GO:0006972	hyperosmotic response
biological_process	GO:0007030	Golgi organization
biological_process	GO:0006096	glycolytic process
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0006000	fructose metabolic process
biological_process	GO:0007010	cytoskeleton organization
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005829	cytosol
molecular_function	GO:0004615	phosphomannomutase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG03G012620	ClCG03G012620	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG03G012620.1	ClCG03G012620.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G012620.1.cds2	ClCG03G012620.1.cds2	CDS
ClCG03G012620.1.cds1	ClCG03G012620.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G012620.1.five_prime_UTR1	ClCG03G012620.1.five_prime_UTR1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005002	Eukaryotic phosphomannomutase	PANTHER	PTHR10466	PHOSPHOMANNOMUTASE	coord: 15..44 score: 3.5
IPR005002	Eukaryotic phosphomannomutase	PFAM	PF03332	PMM	coord: 11..48 score: 1.9
IPR023214	HAD-like domain	unknown	SSF56784	HAD-like	coord: 14..44 score: 6.8