ClCG03G011570.1 (mRNA) Watermelon (Charleston Gray)

Overview
NameClCG03G011570.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr03 : 22607137 .. 22608067 (+)
Sequence length393
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGACAGAACGATCAAGACAATGATCAAGGGGGCCCGTCAAGCTCAAGTATGTCCCTTGAAAACATGGTAAAGAGTTTAGCTGACAGCAATATGAAATTTCAACAGGAGACTAGGAGTGGCATGGAGAGCTTGGGAAAACAAATTTCCTAATTGGCCACCACAGTAAGCAGGTTGGAGAAGAAACCTCGTAAGCTTCCCTCACAACAGGAGAAGAACCCGAGGGAGAACGTCGGTGCATTCACTTTAAGGAGTAGGAAGGAGCTCCCACCACCAATCATGTCTGTGGATGCCCTTACAGAGGTGGATTCTTCACCTTCTGAGCCAGTTGAAATATGAGGACCATCTCCTAAACCTAAAAAGGGAGTAAAATTCAATCTTCCTCCCACTGTAAATTCTAATTTAAGAAGTATTTTTCAATGTGTGAAGTGAAGGGTTGCTAATTTATTAATCCAATGTACTATAAAATTTTAAAACCTAGTATACAAGTGTAAGATACTATACTAAGGGAAAAAGTGATAACAAAATTTAAATATGATAAAAAATTTTAGTAATATGAAACATAAATATGAGACGTGATAAATCCCACTTGACTGTGTTTTGTCCTCATATGCAAAATTAATTCCAAAAGGAAACAAGATTTCTTTTATACTGATTTAGGGTAGCACTTTACCAGGCCAAGTTGAAGCAATAATGGGAGTGAGCCCTTGAAGATGGTGACCTGAAAGCGAATGATAAAAAGAGTCTGCAACTTCACTAGTTGCAAAGATGGATAGAAGGAAACGTGAATGACGGACGATGTGACTAAACGGTGGAGGATGCAAGTGCCACGACGACGACTTATAATGGAGGAGGTCGACGGCTTGGAGGACGAACAAACTTAAGGATGCCTTGTGCAAGAACGGACGACAACGAATCAGATGGCTGA

mRNA sequence

ATGGGAAGACAGAACGATCAAGACAATGATCAAGGGGGCCCGTCAAGCTCAAGTATGTCCCTTGAAAACATGGTAAAGAGTTTAGCTGACAGCAATATGAAATTTCAACAGGAGACTAGGATAAGCAGGTTGGAGAAGAAACCTCGTAAGCTTCCCTCACAACAGGAGAAGAACCCGAGGGAGAACGTCGGTGCATTCACTTTAAGGAGTAGGAAGGAGCTCCCACCACCAATCATGTCTGTGGATGCCCTTACAGAGGTGGATTCTTCACCTTCTGAGCCAGATGCAAGTGCCACGACGACGACTTATAATGGAGGAGGTCGACGGCTTGGAGGACGAACAAACTTAAGGATGCCTTGTGCAAGAACGGACGACAACGAATCAGATGGCTGA

Coding sequence (CDS)

ATGGGAAGACAGAACGATCAAGACAATGATCAAGGGGGCCCGTCAAGCTCAAGTATGTCCCTTGAAAACATGGTAAAGAGTTTAGCTGACAGCAATATGAAATTTCAACAGGAGACTAGGATAAGCAGGTTGGAGAAGAAACCTCGTAAGCTTCCCTCACAACAGGAGAAGAACCCGAGGGAGAACGTCGGTGCATTCACTTTAAGGAGTAGGAAGGAGCTCCCACCACCAATCATGTCTGTGGATGCCCTTACAGAGGTGGATTCTTCACCTTCTGAGCCAGATGCAAGTGCCACGACGACGACTTATAATGGAGGAGGTCGACGGCTTGGAGGACGAACAAACTTAAGGATGCCTTGTGCAAGAACGGACGACAACGAATCAGATGGCTGA

Protein sequence

MGRQNDQDNDQGGPSSSSMSLENMVKSLADSNMKFQQETRISRLEKKPRKLPSQQEKNPRENVGAFTLRSRKELPPPIMSVDALTEVDSSPSEPDASATTTTYNGGGRRLGGRTNLRMPCARTDDNESDG
Homology
[Close]
BLAST of ClCG03G011570.1 vs. TrEMBL
Match: A0A0J8BAH8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g180100 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-07
Identity = 40/99 (40.40%), Postives = 52/99 (52.53%), Query Frame = 1 

Query: 4   QNDQDNDQGGPSSSSMSLENMVKSLADSNMKFQQETR----------------ISRLEK- 63
           QN     Q  P S  MSLE+MV ++A S ++FQQETR                + RL+  
Sbjct: 271 QNQPIPLQQQPQSGGMSLEDMVNTMASSTLQFQQETRSGLQNLENQVSQLADTVGRLQAH 330

Query: 64  KPRKLPSQQEKNPRENVGAFTLRSRKELPPPIMSVDALT 86
              KLPSQ E+NP+EN    ++RS KEL  PI + D  T
Sbjct: 331 SSNKLPSQPERNPKENASVISVRSDKELEIPIKTKDKST 369

[Close]
BLAST of ClCG03G011570.1 vs. TrEMBL
Match: A0A0K9QKB3_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_175650 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.1e-06
Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 1 

Query: 14  PSSSSMSLENMVKSLADSNMKFQQETR--ISRLEKK---------------PRKLPSQQE 73
           P S  MSLE +VK++A++ M+FQQE R  +  LE +                 KLPSQ E
Sbjct: 335 PQSGGMSLEEIVKTMANNTMQFQQEARSGLKNLENQVSQLADTVGKLQAQNSNKLPSQPE 394

Query: 74  KNPRENVGAFTLRSRKELPPP 78
           +NP+ENV   +LRS KEL  P
Sbjct: 395 RNPKENVSEISLRSGKELETP 415

[Close]
BLAST of ClCG03G011570.1 vs. NCBI nr
Match: gi|802667470|ref|XP_012081342.1| (PREDICTED: uncharacterized protein LOC105641420 [Jatropha curcas])

HSP 1 Score: 65.5 bits (158), Expect = 8.0e-08
Identity = 43/89 (48.31%), Postives = 50/89 (56.18%), Query Frame = 1 

Query: 4   QNDQDNDQGGPSSSSMSLENMVKSLADSNMKFQQETR--ISRLE-------------KKP 63
           QN Q     G SSS MSLE++VKSLA + M+FQQETR  I  LE             +  
Sbjct: 424 QNRQPTPDHGSSSSGMSLEDIVKSLATNTMQFQQETRTSIQNLENQVSQLATSLGKLESQ 483

Query: 64  RKLPSQQEKNPRENVGAFTLRSRKELPPP 78
            KLPSQ   NP++N  A TLRS KEL  P
Sbjct: 484 GKLPSQTILNPKQNANAITLRSGKELEIP 512

[Close]
BLAST of ClCG03G011570.1 vs. NCBI nr
Match: gi|731363153|ref|XP_010693276.1| (PREDICTED: uncharacterized protein LOC104906241 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 63.2 bits (152), Expect = 4.0e-07
Identity = 37/81 (45.68%), Postives = 46/81 (56.79%), Query Frame = 1 

Query: 14  PSSSSMSLENMVKSLADSNMKFQQETR----------------ISRLE-KKPRKLPSQQE 73
           P +  MSLE +VKS+A S ++FQQETR                + RLE +   K PSQ E
Sbjct: 453 PQAGGMSLEEIVKSMASSTLQFQQETRSGLKNLENQVSQLASTVGRLEAQNSHKFPSQTE 512

Query: 74  KNPRENVGAFTLRSRKELPPP 78
           KNPREN  A +LRS K+L  P
Sbjct: 513 KNPRENANAISLRSGKKLEEP 533

[Close]
BLAST of ClCG03G011570.1 vs. NCBI nr
Match: gi|870843876|gb|KMS96968.1| (hypothetical protein BVRB_7g180100 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 63.2 bits (152), Expect = 4.0e-07
Identity = 40/99 (40.40%), Postives = 52/99 (52.53%), Query Frame = 1 

Query: 4   QNDQDNDQGGPSSSSMSLENMVKSLADSNMKFQQETR----------------ISRLEK- 63
           QN     Q  P S  MSLE+MV ++A S ++FQQETR                + RL+  
Sbjct: 271 QNQPIPLQQQPQSGGMSLEDMVNTMASSTLQFQQETRSGLQNLENQVSQLADTVGRLQAH 330

Query: 64  KPRKLPSQQEKNPRENVGAFTLRSRKELPPPIMSVDALT 86
              KLPSQ E+NP+EN    ++RS KEL  PI + D  T
Sbjct: 331 SSNKLPSQPERNPKENASVISVRSDKELEIPIKTKDKST 369

[Close]
BLAST of ClCG03G011570.1 vs. NCBI nr
Match: gi|902165046|gb|KNA07031.1| (hypothetical protein SOVF_175650, partial [Spinacia oleracea])

HSP 1 Score: 59.7 bits (143), Expect = 4.4e-06
Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 1 

Query: 14  PSSSSMSLENMVKSLADSNMKFQQETR--ISRLEKK---------------PRKLPSQQE 73
           P S  MSLE +VK++A++ M+FQQE R  +  LE +                 KLPSQ E
Sbjct: 335 PQSGGMSLEEIVKTMANNTMQFQQEARSGLKNLENQVSQLADTVGKLQAQNSNKLPSQPE 394

Query: 74  KNPRENVGAFTLRSRKELPPP 78
           +NP+ENV   +LRS KEL  P
Sbjct: 395 RNPKENVSEISLRSGKELETP 415

[Close]
BLAST of ClCG03G011570.1 vs. NCBI nr
Match: gi|720098695|ref|XP_010247708.1| (PREDICTED: uncharacterized protein LOC104590680, partial [Nelumbo nucifera])

HSP 1 Score: 58.9 bits (141), Expect = 7.5e-06
Identity = 37/99 (37.37%), Postives = 53/99 (53.54%), Query Frame = 1 

Query: 16  SSSMSLENMVKSLADSNMKFQQETR----------------ISRLEKKPR-KLPSQQEKN 75
           +S MSL+ +VK+LA +  +FQQETR                +S++E +   +LPSQ   N
Sbjct: 159 NSGMSLDEIVKALATNTQQFQQETRTSIRNLENQVSQLATAMSQMESQSLGRLPSQTTTN 218

Query: 76  PRENVGAFTLRSRKELPPPIMSVDALTEVDSSPSEPDAS 98
           P++N  A TLRS KEL  P       T    +PS+ D+S
Sbjct: 219 PKQNASAITLRSGKELNEPYQEASKDTTRKETPSQTDSS 257

The following BLAST results are available for this feature:
BLAST of ClCG03G011570.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0J8BAH8_BETVU2.8e-0740.40Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g180100 PE=4 S... [more]
A0A0K9QKB3_SPIOL3.1e-0643.21Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_175650 PE=4 SV=1[more]
BLAST of ClCG03G011570.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|802667470|ref|XP_012081342.1|8.0e-0848.31PREDICTED: uncharacterized protein LOC105641420 [Jatropha curcas][more]
gi|731363153|ref|XP_010693276.1|4.0e-0745.68PREDICTED: uncharacterized protein LOC104906241 [Beta vulgaris subsp. vulgaris][more]
gi|870843876|gb|KMS96968.1|4.0e-0740.40hypothetical protein BVRB_7g180100 [Beta vulgaris subsp. vulgaris][more]
gi|902165046|gb|KNA07031.1|4.4e-0643.21hypothetical protein SOVF_175650, partial [Spinacia oleracea][more]
gi|720098695|ref|XP_010247708.1|7.5e-0637.37PREDICTED: uncharacterized protein LOC104590680, partial [Nelumbo nucifera][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG03G011570ClCG03G011570gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG03G011570.1ClCG03G011570.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG03G011570.1.cds1ClCG03G011570.1.cds1CDS
ClCG03G011570.1.cds2ClCG03G011570.1.cds2CDS
ClCG03G011570.1.cds3ClCG03G011570.1.cds3CDS