ClCG03G010070.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G010070.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Gypsy/ty3 element polyprotein
Location	CG_Chr03 : 16982017 .. 16982463 (+)
Sequence length	438

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGTGTTTAATGGAGACAACCCAAACACATGGATATATCCTGTGGAGAGATGCTTCGAGATTCATGAGCTATCCGACATTGAGAAGATCAAAATGTTGATAATCAGCCAAGATGATGTTGACTGGTACCGATGGGCGAACAATCGACACAAGTTTTAAAGTTGGGATGATTTCAAAGAACACCTCCAAGATCGTTTCAAGATATCGTTGGAAGAGACCCTTTTGTTGCGACTGTGGAACTTGAAAATGGAAACGACCGTTGCTGACTATCAAAAGTGTTTTGAAATAGCGTCAGTGCCCTCGCTAGGTGCGATAGAGGATGTGCTTGAAATGACATTCCTTAAAGGATTGCATTTGGCAATCAAAGTTGAGGTGATTAGTCGAAGAGATGTGGGCCTAGATGAAATTGTAAGAGAAGCCCATTGGTGGGGGATTGAAATCTGA

mRNA sequence

ATGCCAGTGTTTAATGGAGACAACCCAAACACATGGATATATCCTGTGGAGAGATGCTTCGAGATTCATGAGCTATCCGACATTGAGAAGATCAAAATGTTGATAATCAGCCAAGATGATGTTGACTGGTACCGATGGGCGAACAATCGACACAATTGGGATGATTTCAAAGAACACCTCCAAGATCGTTTCAAGATATCGTTGGAAGAGACCCTTTTGTTGCGACTGTGGAACTTGAAAATGGAAACGACCGTTGCTGACTATCAAAAGTGTTTTGAAATAGCGTCAGTGCCCTCGCTAGGTGCGATAGAGGATGTGCTTGAAATGACATTCCTTAAAGGATTGCATTTGGCAATCAAAGTTGAGGTGATTAGTCGAAGAGATGTGGGCCTAGATGAAATTGTAAGAGAAGCCCATTGGTGGGGGATTGAAATCTGA

Coding sequence (CDS)

ATGCCAGTGTTTAATGGAGACAACCCAAACACATGGATATATCCTGTGGAGAGATGCTTCGAGATTCATGAGCTATCCGACATTGAGAAGATCAAAATGTTGATAATCAGCCAAGATGATGTTGACTGGTACCGATGGGCGAACAATCGACACAATTGGGATGATTTCAAAGAACACCTCCAAGATCGTTTCAAGATATCGTTGGAAGAGACCCTTTTGTTGCGACTGTGGAACTTGAAAATGGAAACGACCGTTGCTGACTATCAAAAGTGTTTTGAAATAGCGTCAGTGCCCTCGCTAGGTGCGATAGAGGATGTGCTTGAAATGACATTCCTTAAAGGATTGCATTTGGCAATCAAAGTTGAGGTGATTAGTCGAAGAGATGTGGGCCTAGATGAAATTGTAAGAGAAGCCCATTGGTGGGGGATTGAAATCTGA

Protein sequence

MPVFNGDNPNTWIYPVERCFEIHELSDIEKIKMLIISQDDVDWYRWANNRHNWDDFKEHLQDRFKISLEETLLLRLWNLKMETTVADYQKCFEIASVPSLGAIEDVLEMTFLKGLHLAIKVEVISRRDVGLDEIVREAHWWGIEI

Homology

[Close]

BLAST of ClCG03G010070.1 vs. TrEMBL
Match: E5GCI2_CUCME (Retrotransposon protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-20
Identity = 59/145 (40.69%), Postives = 83/145 (57.24%), Query Frame = 1


Query: 1   MPVFNGDNPNTWIYPVERCFEIHELSDIEKIKMLIIS--QDDVDWYRWANNR---HNWDD 60
           +PVFNG+NP TWIY  E  F+I+EL D EK+K+ ++S   D+V+W+RW+NNR     W+D
Sbjct: 60  IPVFNGENPETWIYRAEHYFDINELVDEEKVKVAVVSFGPDEVNWFRWSNNRKKVKTWED 119

Query: 61  FKEHLQDRFKISLEETLLLRLWNLKMETTVADYQKCFEIASVPSLGAIEDVLEMTFLKGL 120
            K  + + FK   E +L  RL  +K +   +DY K F   S P     E VL   F+ GL
Sbjct: 120 LKRRMFEHFKSPGEGSLGARLIRIKQDGCYSDYLKKFLEYSAPLPEMAESVLIDAFVTGL 179

Query: 121 HLAIKVEVISRRDVGLDEIVREAHW 141
              ++ EV SR  V L+E   +  W
Sbjct: 180 ETNLQAEVKSRHPVTLEECSGKPKW 204

[Close]

BLAST of ClCG03G010070.1 vs. TrEMBL
Match: E5GC35_CUCME (Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.8e-19
Identity = 57/140 (40.71%), Postives = 83/140 (59.29%), Query Frame = 1


Query: 1   MPVFNGDNPNTWIYPVERCFEIHELSDIEKIKMLIISQD--DVDWYRWANNR---HNWDD 60
           MPVFNG++P+ WIY  E  F++H L++ EK+K+ I+S +   + W+RWA NR    +W +
Sbjct: 101 MPVFNGEDPDGWIYKAEYYFQMHLLNEQEKLKIAIVSMEGKGLCWFRWAENRKRFRSWKE 160

Query: 61  FKEHLQDRFKISLEETLLLRLWNLKMETTVADYQKCFEIASVPSLGAIEDVLEMTFLKGL 120
            KE + +RF      T   R   +K E +V +Y + FE  S P     EDVL  TF KGL
Sbjct: 161 LKERMYNRFCNREYGTGCARFLAIKHEGSVGEYLQRFEELSTPLPEMAEDVLVGTFTKGL 220

Query: 121 HLAIKVEVISRRDVGLDEIV 136
              I+ EV + R VGL+++V
Sbjct: 221 DPVIRTEVFAMRVVGLEDMV 240

[Close]

BLAST of ClCG03G010070.1 vs. TrEMBL
Match: B9T325_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0327000 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.6e-16
Identity = 51/143 (35.66%), Postives = 83/143 (58.04%), Query Frame = 1


Query: 1   MPVFNGDNPNTWIYPVERCFEIHELSDIEKIKM--LIISQDDVDWYRWANNRH---NWDD 60
           +PVF G+NP+ WI+  ER F+I+ +  ++++K   + +  D + W++W   R    +W D
Sbjct: 110 LPVFEGENPDGWIFRAERYFDINNIPVVDRLKAASVCLEGDALAWFQWEEGRRPFRSWVD 169

Query: 61  FKEHLQDRFKISLEETLLLRLWNLKMETTVADYQKCFEIASVPSLGAIEDVLEMTFLKGL 120
           FKE L   F+ + E TL  +L  LK  TTV ++++ FEI + P  G  EDVLE  F+ GL
Sbjct: 170 FKESLIVCFRSTQEGTLHDQLLALKQTTTVKEFRRQFEIIAAPLKGLAEDVLEAAFVNGL 229

Query: 121 HLAIKVEVISRRDVGLDEIVREA 139
              ++ E+      GLD+ ++ A
Sbjct: 230 RPDMQAELRQWSPFGLDKKMQVA 252

[Close]

BLAST of ClCG03G010070.1 vs. TrEMBL
Match: W9QTX5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013924 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.0e-15
Identity = 49/143 (34.27%), Postives = 82/143 (57.34%), Query Frame = 1


Query: 1    MPVFNGDNPNTWIYPVERCFEIHELSDIEKIKMLIISQDD--VDWYRWANNR---HNWDD 60
            MPVF+G+NP+ W    ER F ++++++ EK+ + ++S +   + W++W + R    +W  
Sbjct: 869  MPVFDGENPDGWSIRAERYFAMNKMTEREKLDVAVVSLEGEALAWFQWEDGRSPIRSWMV 928

Query: 61   FKEHLQDRFKISLEETLLLRLWNLKMETTVADYQKCFEIASVPSLGAIEDVLEMTFLKGL 120
             K  L +RF+   E +L  +  +L+ ETTV DY++ FEI + P     E VLE TF+KGL
Sbjct: 929  LKLMLLERFRPMQEGSLCEKFLSLRQETTVRDYRRQFEILAAPLTELSEQVLESTFVKGL 988

Query: 121  HLAIKVEVISRRDVGLDEIVREA 139
               I+ E+   +   L  I+  A
Sbjct: 989  KPEIRAEIRLMKPERLGRIMEVA 1011

[Close]

BLAST of ClCG03G010070.1 vs. TrEMBL
Match: A5B2I6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-14
Identity = 48/143 (33.57%), Postives = 80/143 (55.94%), Query Frame = 1


Query: 1   MPVFNGDNPNTWIYPVERCFEIHELSDIEKIKMLIISQDD--VDWYRWANNRH---NWDD 60
           MPVF G+NP+ WI+  +R F  + L++ EK+    +S D   + WY+W ++R    +W++
Sbjct: 775 MPVFTGENPDGWIFRADRYFATYGLTEEEKLVAAAMSLDGDALSWYQWTDSREVFGSWEN 834

Query: 61  FKEHLQDRFKISLEETLLLRLWNLKMETTVADYQKCFEIASVPSLGAIEDVLEMTFLKGL 120
            K  L  RF+++ E +L  +   ++ + TVA Y + FEI   P  G  E+V+E TF+ GL
Sbjct: 835 LKRRLLLRFRLTQEGSLCEQFLAVRQQGTVAAYWREFEILETPLKGISEEVMESTFMNGL 894

Query: 121 HLAIKVEVISRRDVGLDEIVREA 139
              I+ E    +  GL  ++  A
Sbjct: 895 LPEIRAEQRLLQPYGLGHLMEMA 917

[Close]

BLAST of ClCG03G010070.1 vs. NCBI nr
Match: gi|778697580|ref|XP_011654353.1| (PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 1.2e-20
Identity = 57/143 (39.86%), Postives = 88/143 (61.54%), Query Frame = 1


Query: 1   MPVFNGDNPNTWIYPVERCFEIHELSDIEKIKMLIIS--QDDVDWYRWANNR---HNWDD 60
           MP+F G+NP +W+Y  E  FEI+ L + EK+K+ ++S  QD+VDWYR ++NR    +W+D
Sbjct: 88  MPMFLGENPESWVYRAEHFFEINNLPETEKVKVAVVSFGQDEVDWYRRSHNRKKVESWED 147

Query: 61  FKEHLQDRFKISLEETLLLRLWNLKMETTVADYQKCFEIASVPSLGAIEDVLEMTFLKGL 120
            KE + D FK + +++L+ RL  ++ + +  DY K F   S P     E VL   FL GL
Sbjct: 148 LKERMFDFFKDTGQKSLVARLIRIEQDGSYNDYVKKFVNYSAPLPHMTESVLRDAFLTGL 207

Query: 121 HLAIKVEVISRRDVGLDEIVREA 139
              ++ EV+S   + L+E +REA
Sbjct: 208 EPNLQAEVVSHNPLTLEECMREA 230

[Close]

BLAST of ClCG03G010070.1 vs. NCBI nr
Match: gi|307136368|gb|ADN34181.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-20
Identity = 59/145 (40.69%), Postives = 83/145 (57.24%), Query Frame = 1


Query: 1   MPVFNGDNPNTWIYPVERCFEIHELSDIEKIKMLIIS--QDDVDWYRWANNR---HNWDD 60
           +PVFNG+NP TWIY  E  F+I+EL D EK+K+ ++S   D+V+W+RW+NNR     W+D
Sbjct: 60  IPVFNGENPETWIYRAEHYFDINELVDEEKVKVAVVSFGPDEVNWFRWSNNRKKVKTWED 119

Query: 61  FKEHLQDRFKISLEETLLLRLWNLKMETTVADYQKCFEIASVPSLGAIEDVLEMTFLKGL 120
            K  + + FK   E +L  RL  +K +   +DY K F   S P     E VL   F+ GL
Sbjct: 120 LKRRMFEHFKSPGEGSLGARLIRIKQDGCYSDYLKKFLEYSAPLPEMAESVLIDAFVTGL 179

Query: 121 HLAIKVEVISRRDVGLDEIVREAHW 141
              ++ EV SR  V L+E   +  W
Sbjct: 180 ETNLQAEVKSRHPVTLEECSGKPKW 204

[Close]

BLAST of ClCG03G010070.1 vs. NCBI nr
Match: gi|659093928|ref|XP_008447791.1| (PREDICTED: uncharacterized protein LOC103490181 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-19
Identity = 56/143 (39.16%), Postives = 86/143 (60.14%), Query Frame = 1


Query: 1   MPVFNGDNPNTWIYPVERCFEIHELSDIEKIKMLIIS--QDDVDWYRWANNR---HNWDD 60
           MP+F G+NP +W+Y  E  FEI+ L + EK+K+ ++S  QD+VDWYRW++NR    +W+D
Sbjct: 82  MPMFLGENPESWVYRAEHFFEINNLLEAEKVKVAVVSFGQDEVDWYRWSHNRKKVESWED 141

Query: 61  FKEHLQDRFKISLEETLLLRLWNLKMETTVADYQKCFEIASVPSLGAIEDVLEMTFLKGL 120
            K  + + F+ + +++L  RL  ++ E +  DY K F   S P     E VL   FL GL
Sbjct: 142 LKTRMFEFFRDTGQKSLGARLIRIQQEGSYNDYVKKFVNYSAPLPHMAESVLRDAFLTGL 201

Query: 121 HLAIKVEVISRRDVGLDEIVREA 139
             A++ EV+SR    L+E +  A
Sbjct: 202 EPALQAEVMSRHPHTLEECMMAA 224

[Close]

BLAST of ClCG03G010070.1 vs. NCBI nr
Match: gi|659112485|ref|XP_008456244.1| (PREDICTED: uncharacterized protein LOC103496243 [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 2.3e-19
Identity = 55/143 (38.46%), Postives = 88/143 (61.54%), Query Frame = 1


Query: 1   MPVFNGDNPNTWIYPVERCFEIHELSDIEKIKMLIIS--QDDVDWYRWANNR---HNWDD 60
           MP+F G+NP +W+Y VE  FEI+ LS+ EK+K++++S  QD+VDWYRW++N     +W+D
Sbjct: 88  MPMFLGENPESWVYRVEHFFEINNLSEAEKVKVVVVSFGQDEVDWYRWSHNPKKVESWED 147

Query: 61  FKEHLQDRFKISLEETLLLRLWNLKMETTVADYQKCFEIASVPSLGAIEDVLEMTFLKGL 120
            K  + + F+ + +++L  RL  ++ + +  +Y K F   S P     E VL   FL GL
Sbjct: 148 LKTRMFEFFRDTGQKSLGARLIWIQQDGSYNEYVKKFVNYSAPLPYMAESVLRDAFLTGL 207

Query: 121 HLAIKVEVISRRDVGLDEIVREA 139
              ++ EV+SR    L+E + EA
Sbjct: 208 EPTLQAEVVSRHPQTLEECMMEA 230

[Close]

BLAST of ClCG03G010070.1 vs. NCBI nr
Match: gi|307136196|gb|ADN34034.1| (gypsy/ty3 element polyprotein [Cucumis melo subsp. melo])

HSP 1 Score: 101.7 bits (252), Expect = 1.1e-18
Identity = 57/140 (40.71%), Postives = 83/140 (59.29%), Query Frame = 1


Query: 1   MPVFNGDNPNTWIYPVERCFEIHELSDIEKIKMLIISQD--DVDWYRWANNR---HNWDD 60
           MPVFNG++P+ WIY  E  F++H L++ EK+K+ I+S +   + W+RWA NR    +W +
Sbjct: 101 MPVFNGEDPDGWIYKAEYYFQMHLLNEQEKLKIAIVSMEGKGLCWFRWAENRKRFRSWKE 160

Query: 61  FKEHLQDRFKISLEETLLLRLWNLKMETTVADYQKCFEIASVPSLGAIEDVLEMTFLKGL 120
            KE + +RF      T   R   +K E +V +Y + FE  S P     EDVL  TF KGL
Sbjct: 161 LKERMYNRFCNREYGTGCARFLAIKHEGSVGEYLQRFEELSTPLPEMAEDVLVGTFTKGL 220

Query: 121 HLAIKVEVISRRDVGLDEIV 136
              I+ EV + R VGL+++V
Sbjct: 221 DPVIRTEVFAMRVVGLEDMV 240

The following BLAST results are available for this feature:

BLAST of ClCG03G010070.1 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCI2_CUCME	1.1e-20	40.69	Retrotransposon protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GC35_CUCME	7.8e-19	40.71	Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
B9T325_RICCO	3.6e-16	35.66	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0327000 PE=4 SV=1	[more]
W9QTX5_9ROSA	9.0e-15	34.27	Uncharacterized protein OS=Morus notabilis GN=L484_013924 PE=4 SV=1	[more]
A5B2I6_VITVI	1.5e-14	33.57	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1	[more]

BLAST of ClCG03G010070.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778697580\|ref\|XP_011654353.1\|	1.2e-20	39.86	PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus]	[more]
gi\|307136368\|gb\|ADN34181.1\|	1.6e-20	40.69	retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|659093928\|ref\|XP_008447791.1\|	1.3e-19	39.16	PREDICTED: uncharacterized protein LOC103490181 [Cucumis melo]	[more]
gi\|659112485\|ref\|XP_008456244.1\|	2.3e-19	38.46	PREDICTED: uncharacterized protein LOC103496243 [Cucumis melo]	[more]
gi\|307136196\|gb\|ADN34034.1\|	1.1e-18	40.71	gypsy/ty3 element polyprotein [Cucumis melo subsp. melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005162	Retrotrans_gag_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG03G010070	ClCG03G010070	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG03G010070.1	ClCG03G010070.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G010070.1.cds1	ClCG03G010070.1.cds1	CDS
ClCG03G010070.1.cds2	ClCG03G010070.1.cds2	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 47..116 score: 2.