ClCG03G009060.1 (mRNA) Watermelon (Charleston Gray)

Overview
NameClCG03G009060.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr03 : 11757364 .. 11758436 (+)
Sequence length354
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCTACTCCAACACTCCTATCTGAGCTCTCTAGTGATGTTGAAGCTTTCTCTAAAGACCTTCTCAATGGGGCTGTCTGTTATTCAAAACTTGTAGAAACCAATTTCTCAAGCTTCAAATGTATGTGTTAAACCTGTAATTAGACCTACATCCGTTGAACCAAAACCTAGAACTGATCTGTCGACAGTAATGGAAATTCTATCGCTCTCAAATTTGGAGAATAAGGGAGCATCTATTCTCTTAAATGATCAGACAGGAGGGAGGCAAGCATTCCGAGATTATCCATATTTGTGTGCCTAAGTTCGGGTGTTTGCACAAGGATTTCGGGGAACGTGTTTTGTAGGTTGAACTTGAGTTTATGTAGATTTAATATAGATATGATTAGATGATCTCTAGTGCTTGATCTTATAAATATTCTATCATAGTTGAAAGCGAAGCACGTGGATGTTCTTAACAAAAAGTTTGAGAGTTTTTTAGTGTTGGAGAATTCTAAGTCCAAAATTTTTGAACCATTTAAATGAAGAGAACTCTTTTATCTTTTATTTATAAGGTTCTAAGGTAGATTTTGTGGGCTTAGGCTTGGTTAGTACATGGATCTAGCCATGGACCCAACTGATTGGATTGGGTTTTATTTGGCATTTGAGCCAAATTATTAATTCTTAATTGGACCAAAATAATTTGATCCAATGGTCAAAACAAAAACACATAACATCGTTAGGATTTGTTAACTTATATCTTTAATTTCAATTTTTGAGACATCTGTCAACTCTTTAATTAGTCCCAAATTTATTATTTATAATTTCGTGATTTGTGATTGGTCCAAAATTTCTCATTGAACCTGGGATCTTACATTTAACGACGTAGAAGAGCTTCTTAGTGAATAAAAACAACTTGTTTCAAGTACATTTCTCTTTCTCAAGGACTACGTTTCACGACTGCATCTTCATCTTATTCAATTTCTGAAATGCATTACAAATTCATCCTGCCTAAGTCTTTCAAAGAACCTGAAGATGTTAAAGATGTGAAACCAAATGATGAGTCAGCCGGAGAGAGACATAGGGTTAATTGA

mRNA sequence

ATGGAATCTACTCCAACACTCCTATCTGAGCTCTCTAGTGATGTTGAAGCTTTCTCTAAAGACCTTCTCAATGGGGCTGTCTGTTATTCAAAACTTAAACCAATTTCTCAAGCTTCAAATGTATGTGTTAAACCTGTAATTAGACCTACATCCGTTGAACCAAAACCTAGAACTGATCTGTCGACATACATTTCTCTTTCTCAAGGACTACGTTTCACGACTGCATCTTCATCTTATTCAATTTCTGAAATGCATTACAAATTCATCCTGCCTAAGTCTTTCAAAGAACCTGAAGATGTTAAAGATGTGAAACCAAATGATGAGTCAGCCGGAGAGAGACATAGGGTTAATTGA

Coding sequence (CDS)

ATGGAATCTACTCCAACACTCCTATCTGAGCTCTCTAGTGATGTTGAAGCTTTCTCTAAAGACCTTCTCAATGGGGCTGTCTGTTATTCAAAACTTAAACCAATTTCTCAAGCTTCAAATGTATGTGTTAAACCTGTAATTAGACCTACATCCGTTGAACCAAAACCTAGAACTGATCTGTCGACATACATTTCTCTTTCTCAAGGACTACGTTTCACGACTGCATCTTCATCTTATTCAATTTCTGAAATGCATTACAAATTCATCCTGCCTAAGTCTTTCAAAGAACCTGAAGATGTTAAAGATGTGAAACCAAATGATGAGTCAGCCGGAGAGAGACATAGGGTTAATTGA

Protein sequence

MESTPTLLSELSSDVEAFSKDLLNGAVCYSKLKPISQASNVCVKPVIRPTSVEPKPRTDLSTYISLSQGLRFTTASSSYSISEMHYKFILPKSFKEPEDVKDVKPNDESAGERHRVN
Homology
[Close]
BLAST of ClCG03G009060.1 vs. TrEMBL
Match: A0A0A0LI50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G128630 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-08
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 1 

Query: 63  YISLSQGLRFTTASSSYSISEMHYKFILPKSFKEPEDVKDVKPNDESAGERHRV 117
           Y+SLS+GL  TT  SSYS SEMH +    +SFKEPEDV+DV  NDESAG+RHR+
Sbjct: 384 YVSLSRGLSLTTEFSSYSKSEMHSQHH-HESFKEPEDVRDVTSNDESAGDRHRL 436

[Close]
BLAST of ClCG03G009060.1 vs. TrEMBL
Match: A0A0A0LI50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G128630 PE=4 SV=1)

HSP 1 Score: 41.6 bits (96), Expect = 7.8e-01
Identity = 28/61 (45.90%), Postives = 35/61 (57.38%), Query Frame = 1 

Query: 1   MESTPTLLSELSSDVEAFS--KDLLNGAVCYSKLKPISQASNVCVKPVIRPTSVEPKPRT 60
           MES   LLS LSSDVEA S   +L  G   YS+L  +  +S   V+  +RP   E KPRT
Sbjct: 256 MESARALLSGLSSDVEALSNKNNLDEGVGHYSEL--VETSSQASVESPVRPKPTEGKPRT 314

[Close]
BLAST of ClCG03G009060.1 vs. NCBI nr
Match: gi|778668348|ref|XP_011649084.1| (PREDICTED: vacuolar protein sorting-associated protein 9A-like isoform X2 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-08
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 1 

Query: 63  YISLSQGLRFTTASSSYSISEMHYKFILPKSFKEPEDVKDVKPNDESAGERHRV 117
           Y+SLS+GL  TT  SSYS SEMH +    +SFKEPEDV+DV  NDESAG+RHR+
Sbjct: 273 YVSLSRGLSLTTEFSSYSKSEMHSQHH-HESFKEPEDVRDVTSNDESAGDRHRL 325

[Close]
BLAST of ClCG03G009060.1 vs. NCBI nr
Match: gi|778668348|ref|XP_011649084.1| (PREDICTED: vacuolar protein sorting-associated protein 9A-like isoform X2 [Cucumis sativus])

HSP 1 Score: 41.6 bits (96), Expect = 1.1e+00
Identity = 28/61 (45.90%), Postives = 35/61 (57.38%), Query Frame = 1 

Query: 1   MESTPTLLSELSSDVEAFS--KDLLNGAVCYSKLKPISQASNVCVKPVIRPTSVEPKPRT 60
           MES   LLS LSSDVEA S   +L  G   YS+L  +  +S   V+  +RP   E KPRT
Sbjct: 145 MESARALLSGLSSDVEALSNKNNLDEGVGHYSEL--VETSSQASVESPVRPKPTEGKPRT 203


HSP 2 Score: 67.4 bits (163), Expect = 1.9e-08
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 1 

Query: 63  YISLSQGLRFTTASSSYSISEMHYKFILPKSFKEPEDVKDVKPNDESAGERHRV 117
           Y+SLS+GL  TT  SSYS SEMH +    +SFKEPEDV+DV  NDESAG+RHR+
Sbjct: 384 YVSLSRGLSLTTEFSSYSKSEMHSQHH-HESFKEPEDVRDVTSNDESAGDRHRL 436

[Close]
BLAST of ClCG03G009060.1 vs. NCBI nr
Match: gi|778668345|ref|XP_004138949.2| (PREDICTED: vacuolar protein sorting-associated protein 9A-like isoform X1 [Cucumis sativus])

HSP 1 Score: 41.6 bits (96), Expect = 1.1e+00
Identity = 28/61 (45.90%), Postives = 35/61 (57.38%), Query Frame = 1 

Query: 1   MESTPTLLSELSSDVEAFS--KDLLNGAVCYSKLKPISQASNVCVKPVIRPTSVEPKPRT 60
           MES   LLS LSSDVEA S   +L  G   YS+L  +  +S   V+  +RP   E KPRT
Sbjct: 256 MESARALLSGLSSDVEALSNKNNLDEGVGHYSEL--VETSSQASVESPVRPKPTEGKPRT 314


HSP 2 Score: 62.4 bits (150), Expect = 6.1e-07
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 1 

Query: 63  YISLSQGLRFTTASSSYSISEMHYKFILPKSFKEPEDVKDVKPNDESAGERHRV 117
           Y+SLS+GL  TT  SSYS SEM Y     +SFKEPEDV+D+  NDESAGE HR+
Sbjct: 384 YVSLSRGLGLTTELSSYSNSEM-YSQHHHESFKEPEDVRDMTSNDESAGEGHRL 436

[Close]
BLAST of ClCG03G009060.1 vs. NCBI nr
Match: gi|659082124|ref|XP_008441683.1| (PREDICTED: vacuolar protein sorting-associated protein 9A-like [Cucumis melo])

HSP 1 Score: 41.6 bits (96), Expect = 1.1e+00
Identity = 28/61 (45.90%), Postives = 35/61 (57.38%), Query Frame = 1 

Query: 1   MESTPTLLSELSSDVEAFS--KDLLNGAVCYSKLKPISQASNVCVKPVIRPTSVEPKPRT 60
           MES   LLS LSSDVEA S   +L  G   YS+L  +  +S   V+  +RP   E KPRT
Sbjct: 256 MESARALLSGLSSDVEAISNKNNLDEGVGHYSEL--VETSSQASVESQVRPKPTEGKPRT 314

The following BLAST results are available for this feature:
BLAST of ClCG03G009060.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI50_CUCSA1.3e-0864.81Uncharacterized protein OS=Cucumis sativus GN=Csa_2G128630 PE=4 SV=1[more]
A0A0A0LI50_CUCSA7.8e-0145.90Uncharacterized protein OS=Cucumis sativus GN=Csa_2G128630 PE=4 SV=1[more]
BLAST of ClCG03G009060.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778668348|ref|XP_011649084.1|1.9e-0864.81PREDICTED: vacuolar protein sorting-associated protein 9A-like isoform X2 [Cucum... [more]
gi|778668348|ref|XP_011649084.1|1.1e+0045.90PREDICTED: vacuolar protein sorting-associated protein 9A-like isoform X2 [Cucum... [more]
gi|778668345|ref|XP_004138949.2|1.1e+0045.90PREDICTED: vacuolar protein sorting-associated protein 9A-like isoform X1 [Cucum... [more]
gi|659082124|ref|XP_008441683.1|1.1e+0045.90PREDICTED: vacuolar protein sorting-associated protein 9A-like [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG03G009060ClCG03G009060gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG03G009060.1ClCG03G009060.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG03G009060.1.cds1ClCG03G009060.1.cds1CDS
ClCG03G009060.1.cds2ClCG03G009060.1.cds2CDS
ClCG03G009060.1.cds3ClCG03G009060.1.cds3CDS