ClCG03G008910.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G008910.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	structural constituent of ribosome LENGTH=282
Location	CG_Chr03 : 11259597 .. 11259986 (-)
Sequence length	390

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAGGAAGAAGATTGATTTGAAAGAGCAGGAGAAGGCGGGGGAGATTTGGGGGCCGAAGAGGTTCCCCAAAGTGAGGAGATCAAAAGATGAGAAACAGTATCCTCCACCACTCCCATTGTTGGTTCGTACTGAGAATATGGGTTCCCATATGAAGCCATGGGTGATGAGACGGCACTGCACCGGCGACGGGAGGCTGATACTGACGGAAGAGAAGGTCAGACACCGTGAGTTCTTCCGTGCACACAGATCCGGTGGACGCCTGATGCTTCAGCTTGTGGCTGTGGAGGAGCAGATGGCAGAGGAAGGGAACGCAACGCTTATGTTGGAAGTGGCAGTGCCTGGAGTTGTACGGAACCTCACCACCGGCACCCTTCCATTACTCTAA

mRNA sequence

ATGCAGAGGAAGAAGATTGATTTGAAAGAGCAGGAGAAGGCGGGGGAGATTTGGGGGCCGAAGAGGTTCCCCAAAGTGAGGAGATCAAAAGATGAGAAACAGTATCCTCCACCACTCCCATTGTTGGTTCGTACTGAGAATATGGGTTCCCATATGAAGCCATGGGTGATGAGACGGCACTGCACCGGCGACGGGAGGCTGATACTGACGGAAGAGAAGGTCAGACACCGTGAGTTCTTCCGTGCACACAGATCCGGTGGACGCCTGATGCTTCAGCTTGTGGCTGTGGAGGAGCAGATGGCAGAGGAAGGGAACGCAACGCTTATGTTGGAAGTGGCAGTGCCTGGAGTTGTACGGAACCTCACCACCGGCACCCTTCCATTACTCTAA

Coding sequence (CDS)

ATGCAGAGGAAGAAGATTGATTTGAAAGAGCAGGAGAAGGCGGGGGAGATTTGGGGGCCGAAGAGGTTCCCCAAAGTGAGGAGATCAAAAGATGAGAAACAGTATCCTCCACCACTCCCATTGTTGGTTCGTACTGAGAATATGGGTTCCCATATGAAGCCATGGGTGATGAGACGGCACTGCACCGGCGACGGGAGGCTGATACTGACGGAAGAGAAGGTCAGACACCGTGAGTTCTTCCGTGCACACAGATCCGGTGGACGCCTGATGCTTCAGCTTGTGGCTGTGGAGGAGCAGATGGCAGAGGAAGGGAACGCAACGCTTATGTTGGAAGTGGCAGTGCCTGGAGTTGTACGGAACCTCACCACCGGCACCCTTCCATTACTCTAA

Protein sequence

MQRKKIDLKEQEKAGEIWGPKRFPKVRRSKDEKQYPPPLPLLVRTENMGSHMKPWVMRRHCTGDGRLILTEEKVRHREFFRAHRSGGRLMLQLVAVEEQMAEEGNATLMLEVAVPGVVRNLTTGTLPLL

Homology

[Close]

BLAST of ClCG03G008910.1 vs. TrEMBL
Match: M5XST0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb019765mg PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.2e-20
Identity = 56/109 (51.38%), Postives = 76/109 (69.72%), Query Frame = 1


Query: 7   DLKEQEKAGEIWGPKRFPKVRRSKD----EKQYPPPLPLLVRTENMGSHMKPWVMRRHCT 66
           D +E+E+ G+    ++    RR +      K++PPP+PLL RTEN+ SHM PWV++RH T
Sbjct: 84  DDEEEEEEGQSGNFRQRLMGRREQKWAMRNKEFPPPIPLLARTENLPSHM-PWVLKRHYT 143

Query: 67  GDGRLILTEEKVRHREFFRAHRSGGRLMLQLVAVEEQM------AEEGN 106
            DGRLILTEEKVRH E+FRAHRS GRL LQLV +++++       +EGN
Sbjct: 144 SDGRLILTEEKVRHHEYFRAHRSNGRLTLQLVPLDDEVLISPVACDEGN 191

[Close]

BLAST of ClCG03G008910.1 vs. TrEMBL
Match: M5X9T3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb007316mg PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-19
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 1


Query: 24  PKVRRSKDEKQYPPPLPLLVRTENMGSHMKPWVMRRHCTGDGRLILTEEKVRHREFFRAH 83
           PK  + KD  + PPP+P L RTEN+ SHM PW+++RH T DGRLILTEEKVRH E+FRAH
Sbjct: 38  PKKMKMKDYMEVPPPIPSLARTENLPSHM-PWILKRHYTTDGRLILTEEKVRHHEYFRAH 97

Query: 84  RSGGRLMLQLVAVEEQM 101
           RS GRL LQLV +++ +
Sbjct: 98  RSNGRLRLQLVPLDDDV 113

[Close]

BLAST of ClCG03G008910.1 vs. TrEMBL
Match: W9SH41_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021523 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.7e-18
Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 1


Query: 27  RRSKD----EKQYPPPLPLLVRTENMGSHMKPWVMRRHCTGDGRLILTEEKVRHREFFRA 86
           RRS +    ++++PPP+P L +TENM S M PWV+RRH TGDGRLILTEEKVRH E+FRA
Sbjct: 91  RRSSETGNYKREFPPPIPSLAQTENMHSRM-PWVLRRHYTGDGRLILTEEKVRHHEYFRA 150

Query: 87  HRSGGRLMLQLVAVE 98
           HRS GRL L LV ++
Sbjct: 151 HRSNGRLTLHLVPLD 164

[Close]

BLAST of ClCG03G008910.1 vs. TrEMBL
Match: B9GUJ3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s09260g PE=4 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 2.2e-17
Identity = 45/80 (56.25%), Postives = 62/80 (77.50%), Query Frame = 1


Query: 22  RFPKVRRSKDEKQYPPPLPLLVRTENMGSHMKPWVMRRHCTGDGRLILTEEKVRHREFFR 81
           R  + +R   +K++PPP+PLL RTEN+ SHM PWV++R+ T DGRLIL EEKVR  E+FR
Sbjct: 55  REKREQRWAKKKEFPPPIPLLARTENLPSHM-PWVLKRYYTSDGRLILREEKVRRHEYFR 114

Query: 82  AHRSGGRLMLQLVAVEEQMA 102
           AHRS GRL L LV ++++++
Sbjct: 115 AHRSNGRLTLHLVPLDDEVS 133

[Close]

BLAST of ClCG03G008910.1 vs. TrEMBL
Match: A0A151TZK4_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_005089 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.8e-17
Identity = 44/67 (65.67%), Postives = 56/67 (83.58%), Query Frame = 1


Query: 30 KDEKQYPPPLPLLVRTENMGSHMKPWVMRRHCTGDGRLILTEEKVRHREFFRAHRSGGRL 89
          K++K +PPP+PLLVRT+N+ SHM PWV++R+ T +GRLIL EEKVRH E+F AHR+ GRL
Sbjct: 33 KEKKPFPPPIPLLVRTQNLASHM-PWVLKRYYTSEGRLILKEEKVRHHEYFLAHRANGRL 92

Query: 90 MLQLVAV 97
           LQLV V
Sbjct: 93 TLQLVNV 98

[Close]

BLAST of ClCG03G008910.1 vs. TAIR10
Match: AT1G22110.1 (AT1G22110.1 structural constituent of ribosome)

HSP 1 Score: 88.2 bits (217), Expect = 4.0e-18
Identity = 42/82 (51.22%), Postives = 57/82 (69.51%), Query Frame = 1


Query: 19  GPKRFPKVRRSKDEKQYPPPLPLLVRTENMGSHMKPWVMRRHCTGDGRLILTEEKVRHRE 78
           G +R  +  R+   +++PPP+PLL +T N+  HM PWV++R  T DGRLIL EEKVRH E
Sbjct: 86  GRRREEREARAAAAREFPPPIPLLAQTGNLLPHM-PWVLKRVVTSDGRLILREEKVRHHE 145

Query: 79  FFRAHRSGGRLMLQLVAVEEQM 101
           +FRA+RS GRL L LV +++ +
Sbjct: 146 YFRANRSNGRLTLHLVPLDDDV 166

[Close]

BLAST of ClCG03G008910.1 vs. TAIR10
Match: AT1G77932.1 (AT1G77932.1 Protein of unknown function (DUF3049))

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-10
Identity = 39/88 (44.32%), Postives = 52/88 (59.09%), Query Frame = 1


Query: 12 EKAGEIWGP-KRFPKVRRSKDEKQYPPPLPLLVRTENMGSHMKPWVMRRHCTGDGRLILT 71
          +K G++  P +R  + +    E   PP LP         SH+ P V++R  T DGRL+L 
Sbjct: 22 DKTGDVKLPCERREEKKTVAREIMSPPMLP---------SHV-PSVLKREYTSDGRLLLK 81

Query: 72 EEKVRHREFFRAHRSGGRLMLQLVAVEE 99
          EEKV   E+FRAHRS GRLM+QLV+++E
Sbjct: 82 EEKVCRNEYFRAHRSNGRLMIQLVSLDE 99

[Close]

BLAST of ClCG03G008910.1 vs. NCBI nr
Match: gi|596297876|ref|XP_007227402.1| (hypothetical protein PRUPE_ppb019765mg [Prunus persica])

HSP 1 Score: 106.7 bits (265), Expect = 3.1e-20
Identity = 56/109 (51.38%), Postives = 76/109 (69.72%), Query Frame = 1


Query: 7   DLKEQEKAGEIWGPKRFPKVRRSKD----EKQYPPPLPLLVRTENMGSHMKPWVMRRHCT 66
           D +E+E+ G+    ++    RR +      K++PPP+PLL RTEN+ SHM PWV++RH T
Sbjct: 84  DDEEEEEEGQSGNFRQRLMGRREQKWAMRNKEFPPPIPLLARTENLPSHM-PWVLKRHYT 143

Query: 67  GDGRLILTEEKVRHREFFRAHRSGGRLMLQLVAVEEQM------AEEGN 106
            DGRLILTEEKVRH E+FRAHRS GRL LQLV +++++       +EGN
Sbjct: 144 SDGRLILTEEKVRHHEYFRAHRSNGRLTLQLVPLDDEVLISPVACDEGN 191

[Close]

BLAST of ClCG03G008910.1 vs. NCBI nr
Match: gi|645256504|ref|XP_008233982.1| (PREDICTED: uncharacterized protein LOC103332972 [Prunus mume])

HSP 1 Score: 105.5 bits (262), Expect = 6.9e-20
Identity = 50/79 (63.29%), Postives = 63/79 (79.75%), Query Frame = 1


Query: 33  KQYPPPLPLLVRTENMGSHMKPWVMRRHCTGDGRLILTEEKVRHREFFRAHRSGGRLMLQ 92
           K++PPP+PLL RTEN+ SHM PWV++RH T DGRLILTEEKVRH E+FRAHRS GRL LQ
Sbjct: 113 KEFPPPIPLLARTENLPSHM-PWVLKRHYTSDGRLILTEEKVRHHEYFRAHRSNGRLTLQ 172

Query: 93  LVAVEEQM------AEEGN 106
           LV +++++       +EGN
Sbjct: 173 LVPLDDEVLIAPVACDEGN 190

[Close]

BLAST of ClCG03G008910.1 vs. NCBI nr
Match: gi|694440832|ref|XP_009347213.1| (PREDICTED: uncharacterized protein LOC103938889 [Pyrus x bretschneideri])

HSP 1 Score: 105.1 bits (261), Expect = 9.1e-20
Identity = 46/68 (67.65%), Postives = 59/68 (86.76%), Query Frame = 1


Query: 33  KQYPPPLPLLVRTENMGSHMKPWVMRRHCTGDGRLILTEEKVRHREFFRAHRSGGRLMLQ 92
           K++PPP+PLL RTEN+ S M PWV++RHCT DGRLILTEEKVRH E+FRAHRS GRL LQ
Sbjct: 70  KEFPPPIPLLARTENLPSRM-PWVLKRHCTDDGRLILTEEKVRHHEYFRAHRSNGRLTLQ 129

Query: 93  LVAVEEQM 101
           L+ +++++
Sbjct: 130 LIPLDDEI 136

[Close]

BLAST of ClCG03G008910.1 vs. NCBI nr
Match: gi|596115588|ref|XP_007221653.1| (hypothetical protein PRUPE_ppb007316mg [Prunus persica])

HSP 1 Score: 104.0 bits (258), Expect = 2.0e-19
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 1


Query: 24  PKVRRSKDEKQYPPPLPLLVRTENMGSHMKPWVMRRHCTGDGRLILTEEKVRHREFFRAH 83
           PK  + KD  + PPP+P L RTEN+ SHM PW+++RH T DGRLILTEEKVRH E+FRAH
Sbjct: 38  PKKMKMKDYMEVPPPIPSLARTENLPSHM-PWILKRHYTTDGRLILTEEKVRHHEYFRAH 97

Query: 84  RSGGRLMLQLVAVEEQM 101
           RS GRL LQLV +++ +
Sbjct: 98  RSNGRLRLQLVPLDDDV 113

[Close]

BLAST of ClCG03G008910.1 vs. NCBI nr
Match: gi|657973884|ref|XP_008378757.1| (PREDICTED: uncharacterized protein LOC103441824 [Malus domestica])

HSP 1 Score: 103.2 bits (256), Expect = 3.4e-19
Identity = 52/94 (55.32%), Postives = 65/94 (69.15%), Query Frame = 1


Query: 7   DLKEQEKAGEIWGPKRFPKVRRSKDEKQYPPPLPLLVRTENMGSHMKPWVMRRHCTGDGR 66
           D   Q K    W P++     + +  ++ PPPL LL RTEN+ SHM PWV++RH T DGR
Sbjct: 110 DCYSQRKERLCWAPEK----EKKRTYEELPPPLSLLARTENLPSHM-PWVLKRHYTTDGR 169

Query: 67  LILTEEKVRHREFFRAHRSGGRLMLQLVAVEEQM 101
           LILTEEKVRH E+FRAHRS GRL LQLV ++ Q+
Sbjct: 170 LILTEEKVRHHEYFRAHRSNGRLRLQLVPLDGQV 198

The following BLAST results are available for this feature:

BLAST of ClCG03G008910.1 vs. TrEMBL


Match Name	E-value	Identity	Description
M5XST0_PRUPE	2.2e-20	51.38	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb019765mg PE=4 SV=1	[more]
M5X9T3_PRUPE	1.4e-19	62.34	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb007316mg PE=4 SV=1	[more]
W9SH41_9ROSA	7.7e-18	64.00	Uncharacterized protein OS=Morus notabilis GN=L484_021523 PE=4 SV=1	[more]
B9GUJ3_POPTR	2.2e-17	56.25	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s09260g PE=4 SV=2	[more]
A0A151TZK4_CAJCA	3.8e-17	65.67	Uncharacterized protein OS=Cajanus cajan GN=KK1_005089 PE=4 SV=1	[more]

BLAST of ClCG03G008910.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G22110.1	4.0e-18	51.22	structural constituent of ribosome	[more]
AT1G77932.1	1.1e-10	44.32	Protein of unknown function (DUF3049)	[more]

BLAST of ClCG03G008910.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|596297876\|ref\|XP_007227402.1\|	3.1e-20	51.38	hypothetical protein PRUPE_ppb019765mg [Prunus persica]	[more]
gi\|645256504\|ref\|XP_008233982.1\|	6.9e-20	63.29	PREDICTED: uncharacterized protein LOC103332972 [Prunus mume]	[more]
gi\|694440832\|ref\|XP_009347213.1\|	9.1e-20	67.65	PREDICTED: uncharacterized protein LOC103938889 [Pyrus x bretschneideri]	[more]
gi\|596115588\|ref\|XP_007221653.1\|	2.0e-19	62.34	hypothetical protein PRUPE_ppb007316mg [Prunus persica]	[more]
gi\|657973884\|ref\|XP_008378757.1\|	3.4e-19	55.32	PREDICTED: uncharacterized protein LOC103441824 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR021410	FAF

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG03G008910	ClCG03G008910	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG03G008910.1	ClCG03G008910.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G008910.1.cds1	ClCG03G008910.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021410	The fantastic four family	PFAM	PF11250	FAF	coord: 35..93 score: 3.3
None	No IPR available	PANTHER	PTHR33155	FAMILY NOT NAMED	coord: 27..103 score: 1.2
None	No IPR available	PANTHER	PTHR33155:SF12	F2E2.18	coord: 27..103 score: 1.2