ClCG03G004220.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G004220.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	50S ribosomal protein L7/L12, putative
Location	CG_Chr03 : 4562584 .. 4563228 (+)
Sequence length	645

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCTTAGTTTTAAGAATAAGGCATCTTCTACCCAATGTGTTTGCAAACACCATTCGCTCTCCTGCTGTAGCCCTCAATCCTCTCAACATAAATGGATTACATAGAAATTATGCTCAACCTGCTCGGATAGAGGAGGAAGAGGAAGAGGTAGAAATTGACCAGAGAAGGCTTCCAGCTGATTACGATCCTGCTAATTTTGATCCAACACAGCACCGTAGTCCTCCGACTGATCGTGTTTTTAGGCTTGTAGATGAAATATCTGGGCTCACATTAGTTGAAATTTCTGAATTATCTTCCATTTTGAGGAAAAAATTGGGAATGACAGACATGCCAGTTGTTGGAGTTATGAAACCAGGAGCTGCTGGATTGGCTGGAATGGGAATGAAGGCATCATCAGCAACTGCCAAGGAGGAGAAGAAGGCAGAAAAGACTGTTTACGAGTTGAAACTAGAGTCTTACGAAGCATCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTTTCACTGATTTAGGTCTGAAAGAGGCAAAGGATTTAGTGGAGAAAACCCCATCAGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAAATAATTGAAAAGATGAAGGCACTTGGTGCAAAAGTGATCTTGGAATGA

mRNA sequence

ATGCGCTTAGTTTTAAGAATAAGGCATCTTCTACCCAATGTGTTTGCAAACACCATTCGCTCTCCTGCTGTAGCCCTCAATCCTCTCAACATAAATGGATTACATAGAAATTATGCTCAACCTGCTCGGATAGAGGAGGAAGAGGAAGAGGTAGAAATTGACCAGAGAAGGCTTCCAGCTGATTACGATCCTGCTAATTTTGATCCAACACAGCACCGTAGTCCTCCGACTGATCGTGTTTTTAGGCTTGTAGATGAAATATCTGGGCTCACATTAGTTGAAATTTCTGAATTATCTTCCATTTTGAGGAAAAAATTGGGAATGACAGACATGCCAGTTGTTGGAGTTATGAAACCAGGAGCTGCTGGATTGGCTGGAATGGGAATGAAGGCATCATCAGCAACTGCCAAGGAGGAGAAGAAGGCAGAAAAGACTGTTTACGAGTTGAAACTAGAGTCTTACGAAGCATCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTTTCACTGATTTAGGTCTGAAAGAGGCAAAGGATTTAGTGGAGAAAACCCCATCAGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAAATAATTGAAAAGATGAAGGCACTTGGTGCAAAAGTGATCTTGGAATGA

Coding sequence (CDS)

ATGCGCTTAGTTTTAAGAATAAGGCATCTTCTACCCAATGTGTTTGCAAACACCATTCGCTCTCCTGCTGTAGCCCTCAATCCTCTCAACATAAATGGATTACATAGAAATTATGCTCAACCTGCTCGGATAGAGGAGGAAGAGGAAGAGGTAGAAATTGACCAGAGAAGGCTTCCAGCTGATTACGATCCTGCTAATTTTGATCCAACACAGCACCGTAGTCCTCCGACTGATCGTGTTTTTAGGCTTGTAGATGAAATATCTGGGCTCACATTAGTTGAAATTTCTGAATTATCTTCCATTTTGAGGAAAAAATTGGGAATGACAGACATGCCAGTTGTTGGAGTTATGAAACCAGGAGCTGCTGGATTGGCTGGAATGGGAATGAAGGCATCATCAGCAACTGCCAAGGAGGAGAAGAAGGCAGAAAAGACTGTTTACGAGTTGAAACTAGAGTCTTACGAAGCATCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTTTCACTGATTTAGGTCTGAAAGAGGCAAAGGATTTAGTGGAGAAAACCCCATCAGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAAATAATTGAAAAGATGAAGGCACTTGGTGCAAAAGTGATCTTGGAATGA

Protein sequence

MRLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE

Homology

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BLAST of ClCG03G004220.1 vs. Swiss-Prot
Match: MNP1_SCHPO (54S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl12 PE=3 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 9.4e-22
Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = 1


Query: 79  RVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASSATAKE 138
           ++  +VD+IS L+L+E SEL   L++KL + ++  +  + P  A  A      S   A E
Sbjct: 43  QIGEMVDKISSLSLLETSELVKQLKEKLNIAEIAPMAAVAPAVASAA-----PSEEKAPE 102

Query: 139 EKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGE 198
           EKK EKT + LKLES++A +K K+IKEV+S   L L +AK  VE  P VLK+ + KE+ E
Sbjct: 103 EKKEEKTTWNLKLESFDAGSKAKVIKEVKSLLGLSLVDAKKFVESAPKVLKENILKEDAE 162

Query: 199 QIIEKMKALGAKVILE 215
            I  K++ L  KV+LE
Sbjct: 163 AIKSKLEKLSCKVVLE 173

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BLAST of ClCG03G004220.1 vs. Swiss-Prot
Match: RL7_LIBAF (50S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-19
Identity = 55/131 (41.98%), Postives = 81/131 (61.83%), Query Frame = 1


Query: 83  LVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASSATAKEEKKA 142
           +V+++S LTL++ +ELS  L ++ G++    V V+             AS+A       A
Sbjct: 7   IVEKLSSLTLLQAAELSKRLEEEWGVSAAAPVAVV-------------ASAAGESAAAVA 66

Query: 143 EKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQIIE 202
           EKT +E+ LE ++A  KI +IKEVR+ T+LGLKEAKD VE  P  LK G+SK+E E++ +
Sbjct: 67  EKTEFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKK 124

Query: 203 KMKALGAKVIL 214
           K++A GA +IL
Sbjct: 127 KLEAAGATIIL 124

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BLAST of ClCG03G004220.1 vs. Swiss-Prot
Match: RL7_BRASB (50S ribosomal protein L7/L12 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplL PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.8e-18
Identity = 55/133 (41.35%), Postives = 82/133 (61.65%), Query Frame = 1


Query: 82  RLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASSATAKEEKK 141
           ++VD++S LT++E +EL+ +L +K G++    V V  PGA G         +A A  E+K
Sbjct: 6   KIVDDLSALTVLEAAELAKLLEEKWGVSAAAAVAVAAPGAGG---------AAAAPAEEK 65

Query: 142 AEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQII 201
            E TV    + +     KI++IKEVR+ T LGLKEAKDLVE  P  +K+G++K+E E+I 
Sbjct: 66  TEFTV----VLASAGDKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVNKDEAEKIK 125

Query: 202 EKMKALGAKVILE 215
            +++  GAKV L+
Sbjct: 126 GQLEKAGAKVELK 125

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BLAST of ClCG03G004220.1 vs. Swiss-Prot
Match: MNP1_YEAST (54S ribosomal protein L12, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MNP1 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.8e-18
Identity = 63/148 (42.57%), Postives = 90/148 (60.81%), Query Frame = 1


Query: 75  PPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTD--MPVVGVMKPGAAGLAGMGMKAS 134
           P   ++ ++V +IS LTL+E S L + L+  L + +  MP+ G M  GAAG AG G   S
Sbjct: 49  PVDPKISKIVQDISQLTLLETSSLINELKTVLNIPEISMPMGGFMA-GAAG-AGAGNVPS 108

Query: 135 S-----ATAKEEKKAE-KTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPS 194
           S     + A+EE K E KTV+ +KL+S++   K K+IKEV+    L L EAK  VE  P 
Sbjct: 109 STGEAGSGAEEEAKPEAKTVFTVKLDSFDTKTKAKVIKEVKGLLGLSLVEAKKFVEAAPK 168

Query: 195 VLKKGLSKEEGEQIIEKMKALGAKVILE 215
           VLK+ ++K++ E+I + ++ LGAKV LE
Sbjct: 169 VLKENVAKDDAEKIKKTLEDLGAKVSLE 194

[Close]

BLAST of ClCG03G004220.1 vs. Swiss-Prot
Match: RL7_BRASO (50S ribosomal protein L7/L12 OS=Bradyrhizobium sp. (strain ORS278) GN=rplL PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.7e-18
Identity = 55/133 (41.35%), Postives = 81/133 (60.90%), Query Frame = 1


Query: 82  RLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASSATAKEEKK 141
           ++VD++S LT++E +EL+ +L +K G++    V V  PG  G         +A A  E+K
Sbjct: 6   KIVDDLSSLTVLEAAELAKLLEEKWGVSAAAAVAVAAPGGGG---------AAAAPAEEK 65

Query: 142 AEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQII 201
            E TV    + +     KI++IKEVR+ T LGLKEAKDLVE  P  +K+G++KEE E+I 
Sbjct: 66  TEFTV----VLASAGDKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVNKEEAEKIK 125

Query: 202 EKMKALGAKVILE 215
            +++  GAKV L+
Sbjct: 126 GQLEKAGAKVELK 125

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BLAST of ClCG03G004220.1 vs. TrEMBL
Match: A0A0A0LU08_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G057000 PE=3 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 1.6e-100
Identity = 192/214 (89.72%), Postives = 200/214 (93.46%), Query Frame = 1


Query: 1   MRLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLPA 60
           MRLV RI HLLPNVFANTIRS  VALNPLN NGLHRNYAQP+RIEEEEEEVEIDQRRLPA
Sbjct: 1   MRLVSRISHLLPNVFANTIRSSTVALNPLNRNGLHRNYAQPSRIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPANFDPT+HRSPPTDRVFRLVDEISGLTLVE++E+SSIL KKLGMT+MPV G MKPG
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG 120

Query: 121 AAGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180
           A GLAGM  K SSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRS TDLGLKEAKDL
Sbjct: 121 AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           V+K PSVLKKGLSKEEGEQI+EKMKALGAKVILE
Sbjct: 181 VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 214

[Close]

BLAST of ClCG03G004220.1 vs. TrEMBL
Match: W9S8M4_9ROSA (50S ribosomal protein OS=Morus notabilis GN=L484_005958 PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.5e-82
Identity = 161/216 (74.54%), Postives = 184/216 (85.19%), Query Frame = 1


Query: 1   MRLVLRIRHLLPNVF-ANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLP 60
           M LVLR++H LPN F     RS  VALNP NINGL +NY QPA  EEE+EEVE DQRRLP
Sbjct: 1   MSLVLRLKHHLPNGFYRKPFRSTVVALNPGNINGLWKNYGQPAIKEEEDEEVEFDQRRLP 60

Query: 61  ADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKP 120
            DYDPA FDP++HRSPPT+RVFRLVDEISGLTL E++EL +I  +K GMT+ P VGVMKP
Sbjct: 61  TDYDPATFDPSEHRSPPTERVFRLVDEISGLTLAEVAELGAIFMRKRGMTEPPSVGVMKP 120

Query: 121 GAAGLAGMGMKASSAT-AKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAK 180
           GAAGLAGM +   +AT AKEEKK EKTV+ELKLESYEA++KIK+IKEVRSFTDLGLKEAK
Sbjct: 121 GAAGLAGMALATKAATAAKEEKKPEKTVFELKLESYEAASKIKLIKEVRSFTDLGLKEAK 180

Query: 181 DLVEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           DLVEKTPS+LKKGLSKEEGEQ++EK+K LGAKV+LE
Sbjct: 181 DLVEKTPSILKKGLSKEEGEQLVEKLKELGAKVVLE 216

[Close]

BLAST of ClCG03G004220.1 vs. TrEMBL
Match: M5WHF2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011350mg PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 4.5e-79
Identity = 161/216 (74.54%), Postives = 185/216 (85.65%), Query Frame = 1


Query: 1   MRLVLRIRHLLPNVFANT-IRSPAVALNPLNINGLHRNYAQPARIEEEEEE-VEIDQRRL 60
           M LVLR+R  LPN F    + SP  ALNP ++NG  +N++QPAR EEEEEE VEIDQRRL
Sbjct: 1   MSLVLRLRQHLPNGFCRRPLISPLAALNPGSLNGFCQNFSQPARKEEEEEEEVEIDQRRL 60

Query: 61  PADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMK 120
           PADYDPA FDPT+HRSPPTDRVFRLVDEIS LTL E++EL SI+ +K GM + P+VGVMK
Sbjct: 61  PADYDPATFDPTEHRSPPTDRVFRLVDEISSLTLAEVAELGSIMMRKKGMKEPPIVGVMK 120

Query: 121 PGAAGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAK 180
           PGAAGL G+ MK  +A AKEEKK EKTV+ELKLES+EA++KIK+IKEVRSFTDLGLKEAK
Sbjct: 121 PGAAGL-GLAMKGPAA-AKEEKKPEKTVFELKLESFEAASKIKLIKEVRSFTDLGLKEAK 180

Query: 181 DLVEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           DLVEK PSVLKKGLSKEEGEQ+IEK+KALGAKV+LE
Sbjct: 181 DLVEKAPSVLKKGLSKEEGEQLIEKLKALGAKVVLE 214

[Close]

BLAST of ClCG03G004220.1 vs. TrEMBL
Match: A0A061DXQ8_THECC (Ribosomal protein L7/L12 isoform 1 OS=Theobroma cacao GN=TCM_006020 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.4e-77
Identity = 163/221 (73.76%), Postives = 185/221 (83.71%), Query Frame = 1


Query: 1   MRLVLRIRHLLPNVF--ANTIRSPAVALNPLNINGLHRNYAQPARIEEE--EEEVEIDQR 60
           M LVLR+RH L + F       S  V LN  + N L RN++QPA+ E+E  EEEVEIDQR
Sbjct: 1   MSLVLRLRHHLHSGFFCRKPFESQIVTLNAFSSNRLSRNFSQPAKQEQEDEEEEVEIDQR 60

Query: 61  RLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGV 120
           RLPADYDP+NFDPT+HRSPPT+RV+RLVDEISGLTL EI+EL SI+ KK GMT+ P VGV
Sbjct: 61  RLPADYDPSNFDPTEHRSPPTERVWRLVDEISGLTLSEIAELGSIIMKKRGMTEPPTVGV 120

Query: 121 MKPGAA-GLAGMGMKASS--ATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLG 180
           MK GAA GLAGM  KA+   A AKEEKKAEKTV+ELKLESYEA++KIKIIKEVRSFTDLG
Sbjct: 121 MKAGAAAGLAGMAKKAAGGGAAAKEEKKAEKTVFELKLESYEAASKIKIIKEVRSFTDLG 180

Query: 181 LKEAKDLVEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           LKEAKDLVEKTP+VLKKG+SKEEGEQ+IEKMKALGAKV+LE
Sbjct: 181 LKEAKDLVEKTPAVLKKGVSKEEGEQLIEKMKALGAKVVLE 221

[Close]

BLAST of ClCG03G004220.1 vs. TrEMBL
Match: B9GY19_POPTR (Ribosomal protein L12 OS=Populus trichocarpa GN=POPTR_0003s07240g PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.7e-76
Identity = 157/219 (71.69%), Postives = 188/219 (85.84%), Query Frame = 1


Query: 1   MRLVLRIRHLLPNVFANTIRSPAVA-LNPLNING-LHRNYAQPAR-IE-EEEEEVEIDQR 60
           M L+ R+RH LPN F+     P ++ L PLN N  L R +A+ AR +E EEEEEVEIDQR
Sbjct: 1   MSLISRLRHCLPNGFST---KPTISPLMPLNFNAVLSRGFAEAARKVEAEEEEEVEIDQR 60

Query: 61  RLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGV 120
           RLP DYDPA FDPT+HRSPPT+RVF+LV+EI+GLTL+EISEL +I+ K++ MT+ P +GV
Sbjct: 61  RLPTDYDPATFDPTEHRSPPTERVFKLVEEIAGLTLMEISELGTIIMKRMKMTEPPTIGV 120

Query: 121 MKPGAAGLAGMGMKA-SSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLK 180
           +K GAAGLAGM MKA ++A AKEEKKAEKTV+ELKLES+EA++KIK+IKEVRSFTDLGLK
Sbjct: 121 LKGGAAGLAGMAMKAPAAAAAKEEKKAEKTVFELKLESFEAASKIKVIKEVRSFTDLGLK 180

Query: 181 EAKDLVEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           EAKDLVEKTPSVLKKG+SKEEGEQIIEKMKA+GAKV+LE
Sbjct: 181 EAKDLVEKTPSVLKKGVSKEEGEQIIEKMKAIGAKVVLE 216

[Close]

BLAST of ClCG03G004220.1 vs. TAIR10
Match: AT1G70190.1 (AT1G70190.1 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)

HSP 1 Score: 263.5 bits (672), Expect = 1.2e-70
Identity = 143/217 (65.90%), Postives = 166/217 (76.50%), Query Frame = 1


Query: 1   MRLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLPA 60
           M LVLR R  L    +         L+ L+  G +R+Y QPA+IE+EEEE E DQR+LP 
Sbjct: 1   MSLVLRFRQHLSQTSSR--------LSLLSRIGGYRSYTQPAKIEDEEEE-EFDQRKLPT 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPA FDPT+HRSPPTDRVFRLVDEIS LTL+EISEL SI+ KK GMT++P V VMKPG
Sbjct: 61  DYDPATFDPTEHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPG 120

Query: 121 AAG---LAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEA 180
           A G   + G G   S +   EE K EKTV+E+KLES+EASAKIKIIKE+RSFTDLGLKEA
Sbjct: 121 AGGGVGVGGGGGMVSQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEA 180

Query: 181 KDLVEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           K LVEKTP++LK GLSKEEGE+I+EK+KALGAKV+LE
Sbjct: 181 KALVEKTPAILKAGLSKEEGEKILEKLKALGAKVVLE 208

[Close]

BLAST of ClCG03G004220.1 vs. TAIR10
Match: AT4G36420.1 (AT4G36420.1 Ribosomal protein L12 family protein)

HSP 1 Score: 146.4 bits (368), Expect = 2.1e-35
Identity = 74/145 (51.03%), Postives = 107/145 (73.79%), Query Frame = 1


Query: 72  HRSPPT--DRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGM 131
           + SP T  + V ++V+E+S LTL+E  +L+ ILR+KL ++++PV+  M PG +       
Sbjct: 35  YSSPATQSENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGAS 94

Query: 132 KASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLK 191
           K++    KE+KK  KT +++ L++Y+A +KIK+IKEVR+ T LGLKEAKDLVEK P++LK
Sbjct: 95  KSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLK 154

Query: 192 KGLSKEEGEQIIEKMKALGAKVILE 215
           KG+SKEE E+IIEK+KA+GAKV +E
Sbjct: 155 KGVSKEEAEKIIEKLKAVGAKVAME 179

[Close]

BLAST of ClCG03G004220.1 vs. TAIR10
Match: AT4G37660.1 (AT4G37660.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-26
Identity = 62/138 (44.93%), Postives = 93/138 (67.39%), Query Frame = 1


Query: 77  TDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASSATA 136
           T ++ R+ D++  L  +E+ + S +   K+G+         + G+A +A  G    ++ +
Sbjct: 39  TKKLERIADDLLKLNRIELYDYSLLFSHKIGLN--------RYGSA-VAVTGSVGDASAS 98

Query: 137 KEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEE 196
            E K AEKT +++KLE +EA++KIK+IKE+R+FTDLGLKEAK LVEK P ++K GL+KEE
Sbjct: 99  TETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALVEKAPVIVKNGLTKEE 158

Query: 197 GEQIIEKMKALGAKVILE 215
            E+I+EK+KA+GA V LE
Sbjct: 159 AEKIMEKLKAVGAIVALE 167

[Close]

BLAST of ClCG03G004220.1 vs. TAIR10
Match: AT3G06040.1 (AT3G06040.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 115.5 bits (288), Expect = 3.9e-26
Identity = 59/151 (39.07%), Postives = 91/151 (60.26%), Query Frame = 1


Query: 64  PANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPGAAG 123
           P+ +DP   R  P+ ++  L + I+ L+  E  ++   L + L +    ++         
Sbjct: 44  PSVYDPYGPRPQPSSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISS------- 103

Query: 124 LAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEK 183
             G+G K  +     E+K EKT +++KLE + AS KIK+IKEVR+FT LGLKEAK+LVEK
Sbjct: 104 -DGIGAKQDTGAGNVEEKKEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEK 163

Query: 184 TPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
            P++LK+G++KEE  +II K+KA+G   ++E
Sbjct: 164 VPAILKQGVTKEEANEIIAKIKAVGGIAVME 186

[Close]

BLAST of ClCG03G004220.1 vs. TAIR10
Match: AT2G03130.1 (AT2G03130.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-22
Identity = 53/83 (63.86%), Postives = 63/83 (75.90%), Query Frame = 1


Query: 132 SSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKG 191
           S   A E  KAEKTV+E+KLES+EA AKIKIIKEVR    +GLKEA  LV K P+VLK G
Sbjct: 9   SGGGANEGAKAEKTVFEVKLESFEARAKIKIIKEVRRIIGVGLKEAMKLVVKAPTVLKTG 68

Query: 192 LSKEEGEQIIEKMKALGAKVILE 215
           LSKEEGE+++EK+ ALGA+ +L+
Sbjct: 69  LSKEEGEEVVEKLNALGAEAVLQ 91

[Close]

BLAST of ClCG03G004220.1 vs. NCBI nr
Match: gi|449454776|ref|XP_004145130.1| (PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis sativus])

HSP 1 Score: 373.6 bits (958), Expect = 2.3e-100
Identity = 192/214 (89.72%), Postives = 200/214 (93.46%), Query Frame = 1


Query: 1   MRLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLPA 60
           MRLV RI HLLPNVFANTIRS  VALNPLN NGLHRNYAQP+RIEEEEEEVEIDQRRLPA
Sbjct: 1   MRLVSRISHLLPNVFANTIRSSTVALNPLNRNGLHRNYAQPSRIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPANFDPT+HRSPPTDRVFRLVDEISGLTLVE++E+SSIL KKLGMT+MPV G MKPG
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG 120

Query: 121 AAGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180
           A GLAGM  K SSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRS TDLGLKEAKDL
Sbjct: 121 AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           V+K PSVLKKGLSKEEGEQI+EKMKALGAKVILE
Sbjct: 181 VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 214

[Close]

BLAST of ClCG03G004220.1 vs. NCBI nr
Match: gi|659067613|ref|XP_008440389.1| (PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis melo])

HSP 1 Score: 373.6 bits (958), Expect = 2.3e-100
Identity = 193/214 (90.19%), Postives = 200/214 (93.46%), Query Frame = 1


Query: 1   MRLVLRIRHLLPNVFANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLPA 60
           MRLV RI HLLPNVFANTIRS  VALNPLN NG+HRNYAQP+RIEEEEEEVEIDQRRLPA
Sbjct: 1   MRLVSRISHLLPNVFANTIRSSTVALNPLNRNGVHRNYAQPSRIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPANFDPT+HRSPPTDRVFRLVDEISGLTLVE++ELSSIL KKLGMT+MPV G MKPG
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAELSSILMKKLGMTEMPVAGYMKPG 120

Query: 121 AAGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180
           A GLAGM  K SSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRS TDLGLKEAKDL
Sbjct: 121 AVGLAGMVKKVSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           V+K PSVLKKGLSKEEGEQIIEKMKALGAKVILE
Sbjct: 181 VDKAPSVLKKGLSKEEGEQIIEKMKALGAKVILE 214

[Close]

BLAST of ClCG03G004220.1 vs. NCBI nr
Match: gi|703123768|ref|XP_010102896.1| (50S ribosomal protein [Morus notabilis])

HSP 1 Score: 313.2 bits (801), Expect = 3.6e-82
Identity = 161/216 (74.54%), Postives = 184/216 (85.19%), Query Frame = 1


Query: 1   MRLVLRIRHLLPNVF-ANTIRSPAVALNPLNINGLHRNYAQPARIEEEEEEVEIDQRRLP 60
           M LVLR++H LPN F     RS  VALNP NINGL +NY QPA  EEE+EEVE DQRRLP
Sbjct: 1   MSLVLRLKHHLPNGFYRKPFRSTVVALNPGNINGLWKNYGQPAIKEEEDEEVEFDQRRLP 60

Query: 61  ADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVMKP 120
            DYDPA FDP++HRSPPT+RVFRLVDEISGLTL E++EL +I  +K GMT+ P VGVMKP
Sbjct: 61  TDYDPATFDPSEHRSPPTERVFRLVDEISGLTLAEVAELGAIFMRKRGMTEPPSVGVMKP 120

Query: 121 GAAGLAGMGMKASSAT-AKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAK 180
           GAAGLAGM +   +AT AKEEKK EKTV+ELKLESYEA++KIK+IKEVRSFTDLGLKEAK
Sbjct: 121 GAAGLAGMALATKAATAAKEEKKPEKTVFELKLESYEAASKIKLIKEVRSFTDLGLKEAK 180

Query: 181 DLVEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           DLVEKTPS+LKKGLSKEEGEQ++EK+K LGAKV+LE
Sbjct: 181 DLVEKTPSILKKGLSKEEGEQLVEKLKELGAKVVLE 216

[Close]

BLAST of ClCG03G004220.1 vs. NCBI nr
Match: gi|1000939117|ref|XP_015583414.1| (PREDICTED: 50S ribosomal protein L7/L12 isoform X1 [Ricinus communis])

HSP 1 Score: 305.8 bits (782), Expect = 5.8e-80
Identity = 161/218 (73.85%), Postives = 186/218 (85.32%), Query Frame = 1


Query: 1   MRLVLRI-RHLLPNVFANTIRSPAVALNPLNING--LHRNYAQPARI-EEEEEEVEIDQR 60
           M L+LR+  HL   V    + SP V LN +N+NG  L R YAQ AR  EEEEEEVEIDQR
Sbjct: 1   MSLILRLSHHLTSGVSKKPLFSPLVQLNLVNVNGVLLSRGYAQAARKDEEEEEEVEIDQR 60

Query: 61  RLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGV 120
           RLPADYDPA FDPT+HRSPPT+RVF+LVDE++GLTLVE++ELSSI+ KK GMT++P VGV
Sbjct: 61  RLPADYDPATFDPTEHRSPPTERVFKLVDEVAGLTLVEVAELSSIIMKKRGMTELPTVGV 120

Query: 121 MKPGAAGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKE 180
           +K GAAGLAGM MKA +A AKEEKK EKTV+ELKLESYEA++KIKIIKEVRSFTDLGLKE
Sbjct: 121 LKGGAAGLAGMAMKAPAAAAKEEKKPEKTVFELKLESYEAASKIKIIKEVRSFTDLGLKE 180

Query: 181 AKDLVEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           AKDLVEKTPS+LK G+SKEE EQIIEKMKA+GAKV++E
Sbjct: 181 AKDLVEKTPSILKAGVSKEEAEQIIEKMKAVGAKVVME 218

[Close]

BLAST of ClCG03G004220.1 vs. NCBI nr
Match: gi|802551114|ref|XP_012064624.1| (PREDICTED: 50S ribosomal protein L12, cyanelle [Jatropha curcas])

HSP 1 Score: 303.5 bits (776), Expect = 2.9e-79
Identity = 159/217 (73.27%), Postives = 192/217 (88.48%), Query Frame = 1


Query: 1   MRLVLRIRHLLPNVFAN-TIRSPAVALNPLNING-LHRNYAQPARI-EEEEEEVEIDQRR 60
           M L+ R+R+ LPN F+  ++ SP V L+ +++NG L R +AQ  R  E+EEEEVEIDQRR
Sbjct: 8   MSLIFRLRNHLPNGFSTKSLFSPLVPLSFMSLNGVLCRGFAQSLRKDEDEEEEVEIDQRR 67

Query: 61  LPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEISELSSILRKKLGMTDMPVVGVM 120
           LP DYDPA FDPT+HRSPPT+RVFRLVDEISGLTLVE++ELSSI+ +K GMT++PVVG+M
Sbjct: 68  LPTDYDPATFDPTEHRSPPTERVFRLVDEISGLTLVEVAELSSIIMRKKGMTELPVVGIM 127

Query: 121 KPGAAGLAGMGMKASSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEA 180
           K GAAGLAGM +KAS+A+AKEEKK EKTV+ELKLES+EA++KIKIIKEVRSFTDLGLKEA
Sbjct: 128 KGGAAGLAGMAVKASAASAKEEKKPEKTVFELKLESFEAASKIKIIKEVRSFTDLGLKEA 187

Query: 181 KDLVEKTPSVLKKGLSKEEGEQIIEKMKALGAKVILE 215
           KDLVEKTPSVLK G+SKEEGE+IIEKMKA+GAKV++E
Sbjct: 188 KDLVEKTPSVLKTGVSKEEGEKIIEKMKAVGAKVVME 224

The following BLAST results are available for this feature:

BLAST of ClCG03G004220.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MNP1_SCHPO	9.4e-22	42.65	54S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
RL7_LIBAF	1.5e-19	41.98	50S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1	[more]
RL7_BRASB	2.8e-18	41.35	50S ribosomal protein L7/L12 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182...	[more]
MNP1_YEAST	2.8e-18	42.57	54S ribosomal protein L12, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
RL7_BRASO	3.7e-18	41.35	50S ribosomal protein L7/L12 OS=Bradyrhizobium sp. (strain ORS278) GN=rplL PE=3 ...	[more]

BLAST of ClCG03G004220.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU08_CUCSA	1.6e-100	89.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G057000 PE=3 SV=1	[more]
W9S8M4_9ROSA	2.5e-82	74.54	50S ribosomal protein OS=Morus notabilis GN=L484_005958 PE=3 SV=1	[more]
M5WHF2_PRUPE	4.5e-79	74.54	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011350mg PE=3 SV=1	[more]
A0A061DXQ8_THECC	1.4e-77	73.76	Ribosomal protein L7/L12 isoform 1 OS=Theobroma cacao GN=TCM_006020 PE=3 SV=1	[more]
B9GY19_POPTR	2.7e-76	71.69	Ribosomal protein L12 OS=Populus trichocarpa GN=POPTR_0003s07240g PE=3 SV=1	[more]

BLAST of ClCG03G004220.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G70190.1	1.2e-70	65.90	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, ...	[more]
AT4G36420.1	2.1e-35	51.03	Ribosomal protein L12 family protein	[more]
AT4G37660.1	3.0e-26	44.93	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl...	[more]
AT3G06040.1	3.9e-26	39.07	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl...	[more]
AT2G03130.1	1.2e-22	63.86	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl...	[more]

BLAST of ClCG03G004220.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449454776\|ref\|XP_004145130.1\|	2.3e-100	89.72	PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis sativus]	[more]
gi\|659067613\|ref\|XP_008440389.1\|	2.3e-100	90.19	PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis melo]	[more]
gi\|703123768\|ref\|XP_010102896.1\|	3.6e-82	74.54	50S ribosomal protein [Morus notabilis]	[more]
gi\|1000939117\|ref\|XP_015583414.1\|	5.8e-80	73.85	PREDICTED: 50S ribosomal protein L7/L12 isoform X1 [Ricinus communis]	[more]
gi\|802551114\|ref\|XP_012064624.1\|	2.9e-79	73.27	PREDICTED: 50S ribosomal protein L12, cyanelle [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000206	Ribosomal_L7/12
IPR008932	Ribosomal_L7/L12_oligo
IPR013823	Ribosomal_L7/L12_C
IPR014719	Ribosomal_L7/12_C/ClpS-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG03G004220	ClCG03G004220	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG03G004220.1	ClCG03G004220.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G004220.1.cds1	ClCG03G004220.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000206	Ribosomal protein L7/L12	HAMAP	MF_00368	Ribosomal_L7_L12	coord: 77..214 score: 17
IPR008932	Ribosomal protein L7/L12, oligomerisation	PFAM	PF16320	Ribosomal_L12_N	coord: 83..123 score: 5.5
IPR008932	Ribosomal protein L7/L12, oligomerisation	unknown	SSF48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	coord: 82..123 score: 1.1
IPR013823	Ribosomal protein L7/L12, C-terminal	PRODOM	PD001326		coord: 151..213 score: 1.0
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 148..213 score: 1.4
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	G3DSA:3.30.1390.10		coord: 142..213 score: 4.3
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	unknown	SSF54736	ClpS-like	coord: 147..213 score: 3.66
None	No IPR available	unknown	Coil	Coil	coord: 137..157 scor
None	No IPR available	GENE3D	G3DSA:1.20.5.710		coord: 83..125 score: 8.
None	No IPR available	PANTHER	PTHR24089	FAMILY NOT NAMED	coord: 44..214 score: 3.3
None	No IPR available	PANTHER	PTHR24089:SF387	50S RIBOSOMAL PROTEIN L7/L12-RELATED	coord: 44..214 score: 3.3