ClCG03G002740.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G002740.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Iron-sulfur cluster insertion protein ErpA
Location	CG_Chr03 : 3158361 .. 3159914 (-)
Sequence length	551

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTCGGTTTTGCGGCAGATAAGGATCAAATTTCAAGTGGAGAGAGTAAAGAGATGGTCCCCAGATTTCTTATTCAGCGGCTAACACCATACTTGGCAACACGTATCCGAGAGAACCAAAGGCTTCTTAGCTCTTCTGTTTCAGCTCATCAAGAAGCCTCTTCTTCGTTGATAACTCCATCTACGGGCACTGATACCATCCACATGACAGAAAATTGCATTCGGGTATCCCTACATTTTATGCAATCCTTTGTGTGCATGTACCATATTGATTAGAAATTAGTCATCTATTTCACTGTCGTCATTGTTTTAGTTCTTAATTTTCTGGACAATCCTCATTTTGTGCACTATTTGGGCCTATAATTTCTTGGTTTTAGGATGCTAATGAACTATTGCCTTTAATATTGGTAATTTGAGCGAAGGATATGAAAATTGGGAATTTTCTTGTTATCACTTCAAATTTGGGGATTTTCTTTGTCATATATGATGATTTAAAGCGAGGCTTAAGTTATAATGCCAAAACTGGAGAAGTATTCAGAATAATATGGTGCCAGTTGCAACAATTATCTTATTCTTAATTTTAAAAAAATTTTACTTGAAAGTTGGAATTTTTGAAAGGGACTGTGACTTGTAAACTTAGGAATGAACTCTTCTTAACTAGATGTATGATGTATTCTCTGTTACCAAAGGGCTAAATTGGTTGATACTCCTATTTATGTTATTGATAAAGGAATATATCAATAAGAGAGTCACAGGTCTTCATCTTCTAAAAGCATTCATTCTATCAGTTTTCTACATCATTTTTTCCCCTTTTCTGCTGCATGTAAGGGTTCAATGATGAAGTTTTTATGAAGAACGGTCTTGGTTTACTCTCTCCTGAGTCTAGACATTCCTTGCAGAGAATGAAAGAATTGCAAGAACCCACGGAAGAAAAGATGCTCCGCTTGAGTGTAGAAAATGGAGGATGTTCTGGATTTCAATATGTTTTCAATTTGGATGACAAAACCAATTCAGATGACAGGTCTATAAAATAGCTCCAATTCACTGCTTATTTTGGATTTTATCTCAAAGATTGCCAGTGATGTTTGGTTTCACTTTTTAAAACTTTACCCTTCTCTCTCCCTTCATGTTTGCAGGGTGTGTGAAAAGGAGGGAGTTAAATTGGTAGTTGATAATATCTCATATGATTTTGTAAAAGGAGCAACAATTGATTATGTTGAAGAGCTGATTCGTTCCGCTTTCATTGTGAGTAAAACCTATATCTCAGTATTTCTGGTTCACCATTTTTGCTTAGATATGCTTATTACTTTTATACCAGAGTGGCCCCTAACAAACCATAGTTATATGACATCTACAAACCCAATGGTCTGTGATCTGTACCAAGTAGTAAAATGCTCCAGAAGCCTCATTTTACGCCATATATTTTATGCATTCTTAAATCTTATCTCACAATAAAACTAGTGCTACTGCAGAAGTTGAACTCTTATATTATGCCTATGTGCAGGTGACCACAAATCCAAGTGCTGTTGGGGGCTGTAGTTGTAAAAGTTCTTTC

mRNA sequence

AATTCGGTTTTGCGGCAGATAAGGATCAAATTTCAAGTGGAGAGAGTAAAGAGATGGTCCCCAGATTTCTTATTCAGCGGCTAACACCATACTTGGCAACACGTATCCGAGAGAACCAAAGGCTTCTTAGCTCTTCTGTTTCAGCTCATCAAGAAGCCTCTTCTTCGTTGATAACTCCATCTACGGGCACTGATACCATCCACATGACAGAAAATTGCATTCGGAACGGTCTTGGTTTACTCTCTCCTGAGTCTAGACATTCCTTGCAGAGAATGAAAGAATTGCAAGAACCCACGGAAGAAAAGATGCTCCGCTTGAGTGTAGAAAATGGAGGATGTTCTGGATTTCAATATGTTTTCAATTTGGATGACAAAACCAATTCAGATGACAGGGTGTGTGAAAAGGAGGGAGTTAAATTGGTAGTTGATAATATCTCATATGATTTTGTAAAAGGAGCAACAATTGATTATGTTGAAGAGCTGATTCGTTCCGCTTTCATTGTGACCACAAATCCAAGTGCTGTTGGGGGCTGTAGTTGTAAAAGTTCTTTC

Coding sequence (CDS)

ATGGTCCCCAGATTTCTTATTCAGCGGCTAACACCATACTTGGCAACACGTATCCGAGAGAACCAAAGGCTTCTTAGCTCTTCTGTTTCAGCTCATCAAGAAGCCTCTTCTTCGTTGATAACTCCATCTACGGGCACTGATACCATCCACATGACAGAAAATTGCATTCGGAACGGTCTTGGTTTACTCTCTCCTGAGTCTAGACATTCCTTGCAGAGAATGAAAGAATTGCAAGAACCCACGGAAGAAAAGATGCTCCGCTTGAGTGTAGAAAATGGAGGATGTTCTGGATTTCAATATGTTTTCAATTTGGATGACAAAACCAATTCAGATGACAGGGTGTGTGAAAAGGAGGGAGTTAAATTGGTAGTTGATAATATCTCATATGATTTTGTAAAAGGAGCAACAATTGATTATGTTGAAGAGCTGATTCGTTCCGCTTTCATTGTGACCACAAATCCAAGTGCTGTTGGGGGCTGTAGTTGTAAAAGTTCTTTC

Protein sequence

MVPRFLIQRLTPYLATRIRENQRLLSSSVSAHQEASSSLITPSTGTDTIHMTENCIRNGLGLLSPESRHSLQRMKELQEPTEEKMLRLSVENGGCSGFQYVFNLDDKTNSDDRVCEKEGVKLVVDNISYDFVKGATIDYVEELIRSAFIVTTNPSAVGGCSCKSSF

Homology

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BLAST of ClCG03G002740.1 vs. Swiss-Prot
Match: ISAM2_ARATH (Iron-sulfur assembly protein IscA-like 2, mitochondrial OS=Arabidopsis thaliana GN=At5g03905 PE=2 SV=2)

HSP 1 Score: 190.7 bits (483), Expect = 1.3e-47
Identity = 107/168 (63.69%), Postives = 123/168 (73.21%), Query Frame = 1


Query: 4   RFLIQRLTPYLATRIRENQRLLS-SSVSAHQEASSSLITP--STGTDTIHMTENCIRNGL 63
           R L++R+ PYLA RIREN RLL+ SS SA +EASSS  +   S+  D +H+++NCIR   
Sbjct: 3   RSLVKRVAPYLAGRIRENHRLLNFSSASAIKEASSSSSSQPESSSNDVVHLSDNCIR--- 62

Query: 64  GLLSPESRHSLQRMKELQ--EPTEEKMLRLSVENGGCSGFQYVFNLDDKTNSDDRVCEKE 123
                       RMKELQ  EP E+KMLRL VE GGCSGFQY F LD++TN DDRV EK 
Sbjct: 63  ------------RMKELQSSEP-EKKMLRLGVETGGCSGFQYKFELDNRTNPDDRVFEKN 122

Query: 124 GVKLVVDNISYDFVKGATIDYVEELIRSAFIVTTNPSAVGGCSCKSSF 167
           GVKLVVDN+SYD VKGATIDY EELIR+AF+V  NPSAVGGCSCKSSF
Sbjct: 123 GVKLVVDNVSYDLVKGATIDYEEELIRAAFVVAVNPSAVGGCSCKSSF 154

[Close]

BLAST of ClCG03G002740.1 vs. Swiss-Prot
Match: ISCA2_BOVIN (Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Bos taurus GN=ISCA2 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.4e-26
Identity = 67/147 (45.58%), Postives = 84/147 (57.14%), Query Frame = 1


Query: 20  ENQRLLSSSVSAHQEASSSLITPSTGTDTIHMTENCIRNGLGLLSPESRHSLQRMKELQE 79
           +  RLL++S         S  +P  G   IH+T++C+               QR+ E+ E
Sbjct: 19  QRSRLLAASRGPRALREVSFSSPEAGEGQIHLTDSCV---------------QRLLEITE 78

Query: 80  PTEEKMLRLSVENGGCSGFQYVFNLDDKTNSDDRVCEKEGVKLVVDNISYDFVKGATIDY 139
            +E   LRL VE GGCSGFQY F+LD   N DDRV EK G ++VVD+ S  FVKGA +D+
Sbjct: 79  GSE--FLRLEVEGGGCSGFQYKFSLDTVINPDDRVFEKGGARVVVDSDSLAFVKGAHVDF 138

Query: 140 VEELIRSAFIVTTNPSAVGGCSCKSSF 167
            +ELIRS+F V  NP A  GCSC SSF
Sbjct: 139 SQELIRSSFQVLNNPQAQQGCSCGSSF 148

[Close]

BLAST of ClCG03G002740.1 vs. Swiss-Prot
Match: ISCA2_PONAB (Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Pongo abelii GN=ISCA2 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.4e-25
Identity = 70/146 (47.95%), Postives = 89/146 (60.96%), Query Frame = 1


Query: 23  RLLSSSVS--AHQEASSSLITPSTGTDTIHMTENCIRNGLGLLSPESRHSLQRMKELQEP 82
           RLL++S+   A +EASSS  +P  G   I +T++C+               QR+ E+ E 
Sbjct: 24  RLLAASLGPQARREASSS--SPEAGEGQIRLTDSCV---------------QRLLEITEG 83

Query: 83  TEEKMLRLSVENGGCSGFQYVFNLDDKTNSDDRVCEKEGVKLVVDNISYDFVKGATIDYV 142
           +E   LRL VE GGCSGFQY F+LD   N DDRV E+ G ++VVD+ S  FVKGA +D+ 
Sbjct: 84  SE--FLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGARVVVDSDSLAFVKGAQVDFS 143

Query: 143 EELIRSAFIVTTNPSAVGGCSCKSSF 167
           +ELIRS+F V  NP A  GCSC SSF
Sbjct: 144 QELIRSSFQVLNNPQAQQGCSCGSSF 150

[Close]

BLAST of ClCG03G002740.1 vs. Swiss-Prot
Match: ISCA2_HUMAN (Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Homo sapiens GN=ISCA2 PE=1 SV=2)

HSP 1 Score: 117.5 bits (293), Expect = 1.4e-25
Identity = 70/146 (47.95%), Postives = 89/146 (60.96%), Query Frame = 1


Query: 23  RLLSSSVS--AHQEASSSLITPSTGTDTIHMTENCIRNGLGLLSPESRHSLQRMKELQEP 82
           RLL++S+   A +EASSS  +P  G   I +T++C+               QR+ E+ E 
Sbjct: 24  RLLTASLGPQARREASSS--SPEAGEGQIRLTDSCV---------------QRLLEITEG 83

Query: 83  TEEKMLRLSVENGGCSGFQYVFNLDDKTNSDDRVCEKEGVKLVVDNISYDFVKGATIDYV 142
           +E   LRL VE GGCSGFQY F+LD   N DDRV E+ G ++VVD+ S  FVKGA +D+ 
Sbjct: 84  SE--FLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGARVVVDSDSLAFVKGAQVDFS 143

Query: 143 EELIRSAFIVTTNPSAVGGCSCKSSF 167
           +ELIRS+F V  NP A  GCSC SSF
Sbjct: 144 QELIRSSFQVLNNPQAQQGCSCGSSF 150

[Close]

BLAST of ClCG03G002740.1 vs. Swiss-Prot
Match: ISCA2_MOUSE (Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Mus musculus GN=Isca2 PE=1 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-23
Identity = 63/133 (47.37%), Postives = 79/133 (59.40%), Query Frame = 1


Query: 34  EASSSLITPSTGTDTIHMTENCIRNGLGLLSPESRHSLQRMKELQEPTEEKMLRLSVENG 93
           E +SS+  P  G   I +T++C+               QR+ E+ E +E   LRL VE G
Sbjct: 37  ETTSSI--PEAGEGQIRLTDSCV---------------QRLLEITEGSE--FLRLQVEGG 96

Query: 94  GCSGFQYVFNLDDKTNSDDRVCEKEGVKLVVDNISYDFVKGATIDYVEELIRSAFIVTTN 153
           GCSGFQY F+LD   N DDRV E+ G ++VVD+ S  FVKGA +D+ +ELIRS+F V  N
Sbjct: 97  GCSGFQYKFSLDTVINPDDRVFEQGGARVVVDSDSLAFVKGAQVDFSQELIRSSFQVLNN 150

Query: 154 PSAVGGCSCKSSF 167
           P A  GCSC SSF
Sbjct: 157 PQAQQGCSCGSSF 150

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BLAST of ClCG03G002740.1 vs. TrEMBL
Match: A0A0A0LSN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G108280 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.0e-59
Identity = 123/149 (82.55%), Postives = 127/149 (85.23%), Query Frame = 1


Query: 1   MVPRFLIQRLTPYLATRIRENQRLLSSSVSAHQEASSSLITPSTGTDTIHMTENCIRNGL 60
           MVPRFLIQRLTPYL   IR+NQRLLSSSVSA+QEASSSLITPS G DTIHM++NCIR   
Sbjct: 1   MVPRFLIQRLTPYLGAHIRKNQRLLSSSVSAYQEASSSLITPSAGIDTIHMSDNCIR--- 60

Query: 61  GLLSPESRHSLQRMKELQEPTEEKMLRLSVENGGCSGFQYVFNLDDKTNSDDRVCEKEGV 120
                       RMKELQEP EEKMLRLSVENGGCSGFQYVFNLDDKTN DDRVCEKEGV
Sbjct: 61  ------------RMKELQEPMEEKMLRLSVENGGCSGFQYVFNLDDKTNPDDRVCEKEGV 120

Query: 121 KLVVDNISYDFVKGATIDYVEELIRSAFI 150
           KLVVDNISYDFVKGATIDYVEELIRSAFI
Sbjct: 121 KLVVDNISYDFVKGATIDYVEELIRSAFI 134

[Close]

BLAST of ClCG03G002740.1 vs. TrEMBL
Match: A0A0A0LXX8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G496290 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.5e-58
Identity = 124/168 (73.81%), Postives = 134/168 (79.76%), Query Frame = 1


Query: 1   MVPRFLIQRLTPYLATRIRENQRLLSSSVSAHQEA--SSSLITPSTGTDTIHMTENCIRN 60
           M PR LIQR+TPYL  RI+ENQRLLSSS SA+QEA   S   +PS   DTIHMT++CIR 
Sbjct: 1   MGPRSLIQRVTPYLVARIKENQRLLSSSASAYQEALPLSPSPSPSAPVDTIHMTDSCIR- 60

Query: 61  GLGLLSPESRHSLQRMKELQEPTEEKMLRLSVENGGCSGFQYVFNLDDKTNSDDRVCEKE 120
                         RMKELQ+P EEKMLRLSVE GGCSGFQYVFNLD KTN DDR+ EKE
Sbjct: 61  --------------RMKELQDPKEEKMLRLSVETGGCSGFQYVFNLDGKTNPDDRIYEKE 120

Query: 121 GVKLVVDNISYDFVKGATIDYVEELIRSAFIVTTNPSAVGGCSCKSSF 167
           GVKLVVDNISYDFVKGATIDYVEELIRSAF+V+TNPSAVGGCSCKSSF
Sbjct: 121 GVKLVVDNISYDFVKGATIDYVEELIRSAFVVSTNPSAVGGCSCKSSF 153

[Close]

BLAST of ClCG03G002740.1 vs. TrEMBL
Match: A0A140B491_PRUPE (Fe-S cluster assembly transfer protein 19 OS=Prunus persica var. persica GN=ISA3 PE=2 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.3e-49
Identity = 115/171 (67.25%), Postives = 127/171 (74.27%), Query Frame = 1


Query: 1   MVPRFLI-QRLTPYLATRIRENQRLLSSSV---SAHQEASSSLITPSTGTDTIHMTENCI 60
           M PR LI  RLTP+ A RIR+NQRLLSSS    SA +EASSS  + S   D + MT+ C+
Sbjct: 1   MAPRSLILHRLTPFFAARIRQNQRLLSSSFYSSSAVEEASSSSSSSSPSLDAVVMTDTCV 60

Query: 61  RNGLGLLSPESRHSLQRMKELQ-EPTEEKMLRLSVENGGCSGFQYVFNLDDKTNSDDRVC 120
                          QRMK+LQ    E KMLRLSVE GGCSGFQYVF+LDDKT+ DDRV 
Sbjct: 61  ---------------QRMKQLQASEAEGKMLRLSVETGGCSGFQYVFDLDDKTHPDDRVF 120

Query: 121 EKEGVKLVVDNISYDFVKGATIDYVEELIRSAFIVTTNPSAVGGCSCKSSF 167
           EKEGVKLVVDN+SYDFVKGAT+DYVEELIRSAF VTTNPSAVGGCSCKSSF
Sbjct: 121 EKEGVKLVVDNVSYDFVKGATVDYVEELIRSAFQVTTNPSAVGGCSCKSSF 156

[Close]

BLAST of ClCG03G002740.1 vs. TrEMBL
Match: M5WAY8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012679mg PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.3e-49
Identity = 115/171 (67.25%), Postives = 127/171 (74.27%), Query Frame = 1


Query: 1   MVPRFLI-QRLTPYLATRIRENQRLLSSSV---SAHQEASSSLITPSTGTDTIHMTENCI 60
           M PR LI  RLTP+ A RIR+NQRLLSSS    SA +EASSS  + S   D + MT+ C+
Sbjct: 1   MAPRSLILHRLTPFFAARIRQNQRLLSSSFYSSSAVEEASSSSSSSSPSLDAVVMTDTCV 60

Query: 61  RNGLGLLSPESRHSLQRMKELQ-EPTEEKMLRLSVENGGCSGFQYVFNLDDKTNSDDRVC 120
                          QRMK+LQ    E KMLRLSVE GGCSGFQYVF+LDDKT+ DDRV 
Sbjct: 61  ---------------QRMKQLQASEAEGKMLRLSVETGGCSGFQYVFDLDDKTHPDDRVF 120

Query: 121 EKEGVKLVVDNISYDFVKGATIDYVEELIRSAFIVTTNPSAVGGCSCKSSF 167
           EKEGVKLVVDN+SYDFVKGAT+DYVEELIRSAF VTTNPSAVGGCSCKSSF
Sbjct: 121 EKEGVKLVVDNVSYDFVKGATVDYVEELIRSAFQVTTNPSAVGGCSCKSSF 156

[Close]

BLAST of ClCG03G002740.1 vs. TrEMBL
Match: A0A022RF47_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015468mg PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.1e-48
Identity = 105/164 (64.02%), Postives = 127/164 (77.44%), Query Frame = 1


Query: 4   RFLIQRLTPYLATRIRENQRLLSSSVSAHQEASSSLITPSTGTDTIHMTENCIRNGLGLL 63
           R LI RLTPY+  R+R+N RLLSSS + H+   SS  +PS+ T+T++MT+ CIR      
Sbjct: 6   RSLIHRLTPYVFARLRQNSRLLSSSSALHEAHLSSPESPSSSTETVNMTDGCIR------ 65

Query: 64  SPESRHSLQRMKELQ-EPTEEKMLRLSVENGGCSGFQYVFNLDDKTNSDDRVCEKEGVKL 123
                    RMKELQ +   +K+LRLS+E GGCSGFQY F+L+DKTN+DDR+ EK+GVKL
Sbjct: 66  ---------RMKELQADDPSKKLLRLSIEAGGCSGFQYNFSLEDKTNNDDRIFEKDGVKL 125

Query: 124 VVDNISYDFVKGATIDYVEELIRSAFIVTTNPSAVGGCSCKSSF 167
           VVDNIS+DFVKGATIDYVEELIRSAF V+TNPSAVGGCSCKSSF
Sbjct: 126 VVDNISFDFVKGATIDYVEELIRSAFQVSTNPSAVGGCSCKSSF 154

[Close]

BLAST of ClCG03G002740.1 vs. TAIR10
Match: AT5G03905.1 (AT5G03905.1 Iron-sulphur cluster biosynthesis family protein)

HSP 1 Score: 190.7 bits (483), Expect = 7.4e-49
Identity = 107/168 (63.69%), Postives = 123/168 (73.21%), Query Frame = 1


Query: 4   RFLIQRLTPYLATRIRENQRLLS-SSVSAHQEASSSLITP--STGTDTIHMTENCIRNGL 63
           R L++R+ PYLA RIREN RLL+ SS SA +EASSS  +   S+  D +H+++NCIR   
Sbjct: 3   RSLVKRVAPYLAGRIRENHRLLNFSSASAIKEASSSSSSQPESSSNDVVHLSDNCIR--- 62

Query: 64  GLLSPESRHSLQRMKELQ--EPTEEKMLRLSVENGGCSGFQYVFNLDDKTNSDDRVCEKE 123
                       RMKELQ  EP E+KMLRL VE GGCSGFQY F LD++TN DDRV EK 
Sbjct: 63  ------------RMKELQSSEP-EKKMLRLGVETGGCSGFQYKFELDNRTNPDDRVFEKN 122

Query: 124 GVKLVVDNISYDFVKGATIDYVEELIRSAFIVTTNPSAVGGCSCKSSF 167
           GVKLVVDN+SYD VKGATIDY EELIR+AF+V  NPSAVGGCSCKSSF
Sbjct: 123 GVKLVVDNVSYDLVKGATIDYEEELIRAAFVVAVNPSAVGGCSCKSSF 154

[Close]

BLAST of ClCG03G002740.1 vs. TAIR10
Match: AT2G36260.1 (AT2G36260.1 Iron-sulphur cluster biosynthesis family protein)

HSP 1 Score: 65.5 bits (158), Expect = 3.6e-11
Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = 1


Query: 73  RMKELQEPTEEKMLRLSVENGGCSGFQYVFNLDDKTNSDDRVCEKEGVKLVVDNISYDFV 132
           R+++L +  ++  LRL+VE  GC+G  YV N   +    D V E++GVK++VD  +   V
Sbjct: 15  RIRQLLQHQQKPFLRLAVEAKGCNGLSYVLNYAQEKGKFDEVVEEKGVKILVDPKAVMHV 74

Query: 133 KGATIDYVEELIRSAFIVTTNPSAVGGCSCKSSF 167
            G  +D+V++ +RS F V  NP+A   C C  SF
Sbjct: 75  IGTEMDFVDDKLRSEF-VFVNPNAT-KCGCGESF 106

[Close]

BLAST of ClCG03G002740.1 vs. TAIR10
Match: AT1G10500.1 (AT1G10500.1 chloroplast-localized ISCA-like protein)

HSP 1 Score: 61.6 bits (148), Expect = 5.2e-10
Identity = 35/103 (33.98%), Postives = 55/103 (53.40%), Query Frame = 1


Query: 67  SRHSLQRMKELQ-EPTEEKMLRLSVENGGCSGFQYVFNLDDKTNS--DDRVCEKEGVKLV 126
           S ++L+ + +++ E  E+  LR+ V+ GGCSG  Y  + +++ N+  DD   E +G  +V
Sbjct: 75  SENALKHLSKMRSERGEDLCLRIGVKQGGCSGMSYTMDFENRANARPDDSTIEYQGFTIV 134

Query: 127 VDNISYDFVKGATIDYVEELIRSAFIVTTNPSAVGGCSCKSSF 167
            D  S  F+ G  +DY + LI   F   +NP+A   C C  SF
Sbjct: 135 CDPKSMLFLFGMQLDYSDALIGGGFSF-SNPNATQTCGCGKSF 176

[Close]

BLAST of ClCG03G002740.1 vs. NCBI nr
Match: gi|449459108|ref|XP_004147288.1| (PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 271.6 bits (693), Expect = 9.4e-70
Identity = 140/166 (84.34%), Postives = 144/166 (86.75%), Query Frame = 1


Query: 1   MVPRFLIQRLTPYLATRIRENQRLLSSSVSAHQEASSSLITPSTGTDTIHMTENCIRNGL 60
           MVPRFLIQRLTPYL   IR+NQRLLSSSVSA+QEASSSLITPS G DTIHM++NCIR   
Sbjct: 1   MVPRFLIQRLTPYLGAHIRKNQRLLSSSVSAYQEASSSLITPSAGIDTIHMSDNCIR--- 60

Query: 61  GLLSPESRHSLQRMKELQEPTEEKMLRLSVENGGCSGFQYVFNLDDKTNSDDRVCEKEGV 120
                       RMKELQEP EEKMLRLSVENGGCSGFQYVFNLDDKTN DDRVCEKEGV
Sbjct: 61  ------------RMKELQEPMEEKMLRLSVENGGCSGFQYVFNLDDKTNPDDRVCEKEGV 120

Query: 121 KLVVDNISYDFVKGATIDYVEELIRSAFIVTTNPSAVGGCSCKSSF 167
           KLVVDNISYDFVKGATIDYVEELIRSAFIVTTNPSAVGGCSCKSSF
Sbjct: 121 KLVVDNISYDFVKGATIDYVEELIRSAFIVTTNPSAVGGCSCKSSF 151

[Close]

BLAST of ClCG03G002740.1 vs. NCBI nr
Match: gi|778659089|ref|XP_011653808.1| (PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 250.4 bits (638), Expect = 2.2e-63
Identity = 131/159 (82.39%), Postives = 135/159 (84.91%), Query Frame = 1


Query: 1   MVPRFLIQRLTPYLATRIRENQRLLSSSVSAHQEASSSLITPSTGTDTIHMTENCIRNGL 60
           MVPRFLIQRLTPYL   IR+NQRLLSSSVSA+QEASSSLITPS G DTIHM++NCIR   
Sbjct: 1   MVPRFLIQRLTPYLGAHIRKNQRLLSSSVSAYQEASSSLITPSAGIDTIHMSDNCIR--- 60

Query: 61  GLLSPESRHSLQRMKELQEPTEEKMLRLSVENGGCSGFQYVFNLDDKTNSDDRVCEKEGV 120
                       RMKELQEP EEKMLRLSVENGGCSGFQYVFNLDDKTN DDRVCEKEGV
Sbjct: 61  ------------RMKELQEPMEEKMLRLSVENGGCSGFQYVFNLDDKTNPDDRVCEKEGV 120

Query: 121 KLVVDNISYDFVKGATIDYVEELIRSAFIVTTNPSAVGG 160
           KLVVDNISYDFVKGATIDYVEELIRSAFIVTTNPS V G
Sbjct: 121 KLVVDNISYDFVKGATIDYVEELIRSAFIVTTNPSDVEG 144

[Close]

BLAST of ClCG03G002740.1 vs. NCBI nr
Match: gi|700209707|gb|KGN64803.1| (hypothetical protein Csa_1G108280 [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 4.4e-59
Identity = 123/149 (82.55%), Postives = 127/149 (85.23%), Query Frame = 1


Query: 1   MVPRFLIQRLTPYLATRIRENQRLLSSSVSAHQEASSSLITPSTGTDTIHMTENCIRNGL 60
           MVPRFLIQRLTPYL   IR+NQRLLSSSVSA+QEASSSLITPS G DTIHM++NCIR   
Sbjct: 1   MVPRFLIQRLTPYLGAHIRKNQRLLSSSVSAYQEASSSLITPSAGIDTIHMSDNCIR--- 60

Query: 61  GLLSPESRHSLQRMKELQEPTEEKMLRLSVENGGCSGFQYVFNLDDKTNSDDRVCEKEGV 120
                       RMKELQEP EEKMLRLSVENGGCSGFQYVFNLDDKTN DDRVCEKEGV
Sbjct: 61  ------------RMKELQEPMEEKMLRLSVENGGCSGFQYVFNLDDKTNPDDRVCEKEGV 120

Query: 121 KLVVDNISYDFVKGATIDYVEELIRSAFI 150
           KLVVDNISYDFVKGATIDYVEELIRSAFI
Sbjct: 121 KLVVDNISYDFVKGATIDYVEELIRSAFI 134

[Close]

BLAST of ClCG03G002740.1 vs. NCBI nr
Match: gi|449470384|ref|XP_004152897.1| (PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 2.2e-58
Identity = 124/168 (73.81%), Postives = 134/168 (79.76%), Query Frame = 1


Query: 1   MVPRFLIQRLTPYLATRIRENQRLLSSSVSAHQEA--SSSLITPSTGTDTIHMTENCIRN 60
           M PR LIQR+TPYL  RI+ENQRLLSSS SA+QEA   S   +PS   DTIHMT++CIR 
Sbjct: 1   MGPRSLIQRVTPYLVARIKENQRLLSSSASAYQEALPLSPSPSPSAPVDTIHMTDSCIR- 60

Query: 61  GLGLLSPESRHSLQRMKELQEPTEEKMLRLSVENGGCSGFQYVFNLDDKTNSDDRVCEKE 120
                         RMKELQ+P EEKMLRLSVE GGCSGFQYVFNLD KTN DDR+ EKE
Sbjct: 61  --------------RMKELQDPKEEKMLRLSVETGGCSGFQYVFNLDGKTNPDDRIYEKE 120

Query: 121 GVKLVVDNISYDFVKGATIDYVEELIRSAFIVTTNPSAVGGCSCKSSF 167
           GVKLVVDNISYDFVKGATIDYVEELIRSAF+V+TNPSAVGGCSCKSSF
Sbjct: 121 GVKLVVDNISYDFVKGATIDYVEELIRSAFVVSTNPSAVGGCSCKSSF 153

[Close]

BLAST of ClCG03G002740.1 vs. NCBI nr
Match: gi|659115367|ref|XP_008457521.1| (PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 232.3 bits (591), Expect = 6.3e-58
Identity = 123/170 (72.35%), Postives = 134/170 (78.82%), Query Frame = 1


Query: 1   MVPRFLIQRLTPYLATRIRENQRLLSSSVSAHQEASSSLITPSTG----TDTIHMTENCI 60
           M PR LIQR+TPYL  RI+ENQRLLSSS +A+QEASS   +PS       DTIHMT++CI
Sbjct: 1   MGPRSLIQRVTPYLVARIKENQRLLSSSATAYQEASSLSSSPSPSPSAPVDTIHMTDSCI 60

Query: 61  RNGLGLLSPESRHSLQRMKELQEPTEEKMLRLSVENGGCSGFQYVFNLDDKTNSDDRVCE 120
           R               RMKELQ+P EEKMLRLSVE GGCSGFQYVFNLD KT  DDR+ E
Sbjct: 61  R---------------RMKELQDPKEEKMLRLSVETGGCSGFQYVFNLDGKTTPDDRIYE 120

Query: 121 KEGVKLVVDNISYDFVKGATIDYVEELIRSAFIVTTNPSAVGGCSCKSSF 167
           KEGVKLVVDNISYDFVKGATIDYVEELIRSAF+V+TNPSAVGGCSCKSSF
Sbjct: 121 KEGVKLVVDNISYDFVKGATIDYVEELIRSAFVVSTNPSAVGGCSCKSSF 155

The following BLAST results are available for this feature:

BLAST of ClCG03G002740.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ISAM2_ARATH	1.3e-47	63.69	Iron-sulfur assembly protein IscA-like 2, mitochondrial OS=Arabidopsis thaliana ...	[more]
ISCA2_BOVIN	6.4e-26	45.58	Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Bos taurus GN=ISCA2 PE=...	[more]
ISCA2_PONAB	1.4e-25	47.95	Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Pongo abelii GN=ISCA2 P...	[more]
ISCA2_HUMAN	1.4e-25	47.95	Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Homo sapiens GN=ISCA2 P...	[more]
ISCA2_MOUSE	1.7e-23	47.37	Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Mus musculus GN=Isca2 P...	[more]

BLAST of ClCG03G002740.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSN2_CUCSA	3.0e-59	82.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G108280 PE=4 SV=1	[more]
A0A0A0LXX8_CUCSA	1.5e-58	73.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G496290 PE=4 SV=1	[more]
A0A140B491_PRUPE	1.3e-49	67.25	Fe-S cluster assembly transfer protein 19 OS=Prunus persica var. persica GN=ISA3...	[more]
M5WAY8_PRUPE	1.3e-49	67.25	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012679mg PE=4 SV=1	[more]
A0A022RF47_ERYGU	1.1e-48	64.02	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015468mg PE=4 SV=1	[more]

BLAST of ClCG03G002740.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G03905.1	7.4e-49	63.69	Iron-sulphur cluster biosynthesis family protein	[more]
AT2G36260.1	3.6e-11	38.30	Iron-sulphur cluster biosynthesis family protein	[more]
AT1G10500.1	5.2e-10	33.98	chloroplast-localized ISCA-like protein	[more]

BLAST of ClCG03G002740.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459108\|ref\|XP_004147288.1\|	9.4e-70	84.34	PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial isoform X1 [C...	[more]
gi\|778659089\|ref\|XP_011653808.1\|	2.2e-63	82.39	PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial isoform X2 [C...	[more]
gi\|700209707\|gb\|KGN64803.1\|	4.4e-59	82.55	hypothetical protein Csa_1G108280 [Cucumis sativus]	[more]
gi\|449470384\|ref\|XP_004152897.1\|	2.2e-58	73.81	PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Cucumis sati...	[more]
gi\|659115367\|ref\|XP_008457521.1\|	6.3e-58	72.35	PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial isoform X2 [C...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000361	FeS_biogenesis
IPR016092	FeS_cluster_insertion

Vocabulary: **Molecular Function**
Term	Definition
GO:0005198	structural molecule activity
GO:0051536	iron-sulfur cluster binding

Vocabulary: **Biological Process**
Term	Definition
GO:0016226	iron-sulfur cluster assembly

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016226	iron-sulfur cluster assembly
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0005198	structural molecule activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG03G002740	ClCG03G002740	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG03G002740.1	ClCG03G002740.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G002740.1.cds4	ClCG03G002740.1.cds4	CDS
ClCG03G002740.1.cds3	ClCG03G002740.1.cds3	CDS
ClCG03G002740.1.cds2	ClCG03G002740.1.cds2	CDS
ClCG03G002740.1.cds1	ClCG03G002740.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G002740.1.five_prime_UTR1	ClCG03G002740.1.five_prime_UTR1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000361	FeS cluster biogenesis	GENE3D	G3DSA:2.60.300.12		coord: 70..154 score: 1.1
IPR000361	FeS cluster biogenesis	PFAM	PF01521	Fe-S_biosyn	coord: 72..163 score: 7.1
IPR000361	FeS cluster biogenesis	unknown	SSF89360	HesB-like domain	coord: 71..156 score: 1.18
IPR016092	FeS cluster insertion protein	TIGRFAMs	TIGR00049	TIGR00049	coord: 70..166 score: 2.6
None	No IPR available	PANTHER	PTHR10072	IRON-SULFUR CLUSTER ASSEMBLY PROTEIN	coord: 3..56 score: 1.6E-55coord: 72..166 score: 1.6
None	No IPR available	PANTHER	PTHR10072:SF46	IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL	coord: 3..56 score: 1.6E-55coord: 72..166 score: 1.6