ClCG03G002370.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G002370.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	LOB domain-containing protein, putative
Location	CG_Chr03 : 2765872 .. 2766917 (+)
Sequence length	642

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTACCGAGTCTAAAATGGAGTCCAGTGAGCCAAAATCCAGCCCAACTTCAACTAACCTCCTTTCTCAGTCGTCGCCGTCGTCTCCTTCACCACCGCCGAGTGTTCAGGCCGCCGTGGTGGTCAGTCCGTGTGCGGCGTGCAAGATTCTGAGGCGGAGATGCGCAGAGAAATGCGTATTAGCGCCCTATTTTCCTCCCTCTGATCCTCTCAAATTCACCATTGCTCACCGTGTCTTCGGCGCTAGCAACATCATCAAATTGCTTCAGGTATCTCCTTAATCCCTAATGTCCGTTTCTCTCTTTCAATTTTGCGCGTTCTCTTCTTGTTTTTGGGTTTTGAAATTGAAATTATGAATTCTGTTGTTGAAATTGAAAATCGATCTTAAAAACTTAACGAAAAACCATCGAATTAGTGTGGAAATACTGTTTGAGCTATTGATGTCATCTCTGGCTGAAATGAAGTCAGTACTGAAATTGATCAAACGAAATCCTAATAGTCTATGAAGAATACGCAAGCCTAATTTGTATGATTCCTTCGCTCTATGAAAATTTGGAGCAATTATAATAAAACATAATGAAAATTGGAAGAATCAAACGAAAGCAGCCCAACTGTTTGATTAATGTCCTCACAGAACAGTTAATCAAATTAATAACTTTATTGAATTCTTCAGGATCTTCCTGATTCACAAAGGGCTGATGCAGTGAGTAGTTTAGTGTATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGCCAGCTTCAGAAACAGATAAACGAATTGCAAGCAGAACTAGCCAAGACACAGGCTGAGCTTGTCAATATCCACTGCCACCAAGCCAATTTGGTGGCTCTGATTTGCAAGGAGTTAGCCCAAACGCCGCCACCGATGTCGCCACTGCCGGACCACCGCTCACTTGACAACAATTTCAACATTGCCACACCTCAGAGCTACCAAGGCTACACATCTTTGTTTGAGGATAGCAATATTTGGGACCCTCTTTGGACATGAGAGAGAGAGAAG

mRNA sequence

TCTCTCTCTACCGAGTCTAAAATGGAGTCCAGTGAGCCAAAATCCAGCCCAACTTCAACTAACCTCCTTTCTCAGTCGTCGCCGTCGTCTCCTTCACCACCGCCGAGTGTTCAGGCCGCCGTGGTGGTCAGTCCGTGTGCGGCGTGCAAGATTCTGAGGCGGAGATGCGCAGAGAAATGCGTATTAGCGCCCTATTTTCCTCCCTCTGATCCTCTCAAATTCACCATTGCTCACCGTGTCTTCGGCGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTGATTCACAAAGGGCTGATGCAGTGAGTAGTTTAGTGTATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGCCAGCTTCAGAAACAGATAAACGAATTGCAAGCAGAACTAGCCAAGACACAGGCTGAGCTTGTCAATATCCACTGCCACCAAGCCAATTTGGTGGCTCTGATTTGCAAGGAGTTAGCCCAAACGCCGCCACCGATGTCGCCACTGCCGGACCACCGCTCACTTGACAACAATTTCAACATTGCCACACCTCAGAGCTACCAAGGCTACACATCTTTGTTTGAGGATAGCAATATTTGGGACCCTCTTTGGACATGAGAGAGAGAGAAG

Coding sequence (CDS)

ATGGAGTCCAGTGAGCCAAAATCCAGCCCAACTTCAACTAACCTCCTTTCTCAGTCGTCGCCGTCGTCTCCTTCACCACCGCCGAGTGTTCAGGCCGCCGTGGTGGTCAGTCCGTGTGCGGCGTGCAAGATTCTGAGGCGGAGATGCGCAGAGAAATGCGTATTAGCGCCCTATTTTCCTCCCTCTGATCCTCTCAAATTCACCATTGCTCACCGTGTCTTCGGCGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTGATTCACAAAGGGCTGATGCAGTGAGTAGTTTAGTGTATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGCCAGCTTCAGAAACAGATAAACGAATTGCAAGCAGAACTAGCCAAGACACAGGCTGAGCTTGTCAATATCCACTGCCACCAAGCCAATTTGGTGGCTCTGATTTGCAAGGAGTTAGCCCAAACGCCGCCACCGATGTCGCCACTGCCGGACCACCGCTCACTTGACAACAATTTCAACATTGCCACACCTCAGAGCTACCAAGGCTACACATCTTTGTTTGAGGATAGCAATATTTGGGACCCTCTTTGGACATGA

Protein sequence

MESSEPKSSPTSTNLLSQSSPSSPSPPPSVQAAVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPMSPLPDHRSLDNNFNIATPQSYQGYTSLFEDSNIWDPLWT

Homology

[Close]

BLAST of ClCG03G002370.1 vs. Swiss-Prot
Match: LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2)

HSP 1 Score: 215.3 bits (547), Expect = 6.1e-55
Identity = 119/218 (54.59%), Postives = 147/218 (67.43%), Query Frame = 1


Query: 3   SSEPKSSPTSTNLLSQSSPSSPSPPPSVQAA----VVVSPCAACKILRRRCAEKCVLAPY 62
           S+  K + T+T + S S  SSP PPPS Q      VV+SPCAACKILRRRCA+KCVLAPY
Sbjct: 16  SAVAKVTETTTPVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCADKCVLAPY 75

Query: 63  FPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPVYGCAGAIC 122
           FPP+DP KFTIAHRVFGASNIIK LQ+LP+SQR DAV+S+VYEA AR+RDPVYGCAGAI 
Sbjct: 76  FPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIY 135

Query: 123 QLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPMSPLPDHR-SLDNNFN 182
            LQ+Q++ELQA+LAKTQ ELV +   +++L+ LI   + QT   +      + S +++F 
Sbjct: 136 HLQRQVSELQAQLAKTQVELVGMQLQRSSLLELI-YNMEQTKLSVQEQGQQKMSFESSFE 195

Query: 183 -----IATPQSYQGYTSLFEDSN--------IWDPLWT 203
                I++P          ED+N         WDPLWT
Sbjct: 196 SGDEFISSPDEESNDLGFLEDNNNNNNSSMSWWDPLWT 232

[Close]

BLAST of ClCG03G002370.1 vs. Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 3.0e-54
Identity = 114/200 (57.00%), Postives = 140/200 (70.00%), Query Frame = 1


Query: 4   SEPKSSPTSTNLLSQSSPSSPSPPPSVQAAVVVSPCAACKILRRRCAEKCVLAPYFPPSD 63
           S+  +S  +T ++S SS    SPPPS+   VV+SPCAACKILRRRCAE+CVLAPYFPP+D
Sbjct: 3   SKSDASVATTPIISSSS----SPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTD 62

Query: 64  PLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQ 123
           P KFTIAHRVFGASNIIK LQ+LP+SQR DAV+S+VYEA ARIRDPVYGCAGAI  LQ+Q
Sbjct: 63  PAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQ 122

Query: 124 INELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPMSPLPDHRSLD-NNFNIATPQ 183
           ++ELQA+LAK Q E+VN+   ++NL+ LI     Q         D+ S + N+      +
Sbjct: 123 VSELQAQLAKAQVEMVNMQFQRSNLLELIYNMDQQQKQEQ----DNMSFESNDLGFLEDK 182

Query: 184 SYQGYTSLFEDSNIWDPLWT 203
           S    + L+     WDPLWT
Sbjct: 183 SNTNSSMLW-----WDPLWT 189

[Close]

BLAST of ClCG03G002370.1 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 9.8e-37
Identity = 72/110 (65.45%), Postives = 87/110 (79.09%), Query Frame = 1


Query: 37  SPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVS 96
           SPCAACK+LRRRCA+ CV +PYFP  +P KF   HRVFGASN+ K+LQ+LP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 97  SLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQA 147
           S+VYEA+AR+RDPVYGC GAI  LQ+QI+ LQA+LA  QAE+V++   Q+
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS 121

[Close]

BLAST of ClCG03G002370.1 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 154.8 bits (390), Expect = 9.8e-37
Identity = 70/105 (66.67%), Postives = 86/105 (81.90%), Query Frame = 1


Query: 37  SPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVS 96
           SPCA+CK+LRRRCA+ C+ APYFPP DP KF I H+VFGASN+ K+LQ+LP  QRADAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 97  SLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNI 142
           SLV+EA+AR+RDPVYGC GAI  LQ Q+++LQ +LA  QAE++ I
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCI 111

[Close]

BLAST of ClCG03G002370.1 vs. Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2)

HSP 1 Score: 143.7 bits (361), Expect = 2.3e-33
Identity = 70/143 (48.95%), Postives = 93/143 (65.03%), Query Frame = 1


Query: 36  VSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAV 95
           ++PCAACK+LRRRCA++C  +PYF P +P KF   H+VFGASN+ K+L ++P+SQRADA 
Sbjct: 43  ITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAA 102

Query: 96  SSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQANLVALICKE 155
           +SLVYEA+ R+RDPVYGC GAI  LQ+Q+  LQAEL   ++E++     +A +  LI   
Sbjct: 103 NSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREA-VATLIVPS 162

Query: 156 LAQ-------------TPPPMSP 166
            +Q              PPP  P
Sbjct: 163 NSQVAGFHNSGGVSVIAPPPQRP 184

[Close]

BLAST of ClCG03G002370.1 vs. TrEMBL
Match: A0A0A0LS55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G088450 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 4.8e-75
Identity = 144/155 (92.90%), Postives = 147/155 (94.84%), Query Frame = 1


Query: 52  KCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPVY 111
           KCVLAPYFPPSDPLKFTIAHR+FGASNIIKLL DLPDSQRADAVSSLVYEASARIRDPVY
Sbjct: 11  KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVY 70

Query: 112 GCAGAICQLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPMSP---LPD 171
           GCAGAICQLQKQINELQAELAKTQAELVNIHCHQ NLVALICKELAQTPPPMS    LP+
Sbjct: 71  GCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPE 130

Query: 172 HRSLDNNFNI-ATPQSYQGYTSLFEDSNIWDPLWT 203
           HRSLDN+FNI ATPQSYQGYTSLF DSNIWDPLWT
Sbjct: 131 HRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 165

[Close]

BLAST of ClCG03G002370.1 vs. TrEMBL
Match: M5W070_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011528mg PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.7e-67
Identity = 138/203 (67.98%), Postives = 160/203 (78.82%), Query Frame = 1


Query: 11  TSTNLLSQS---SPSSPSPP----PSVQAAVVVSPCAACKILRRRCAEKCVLAPYFPPSD 70
           TS+  LSQS   SPSSP PP    P+    VV+SPCAACKILRRRCAEKCVLAPYFPP++
Sbjct: 8   TSSTPLSQSPSSSPSSPPPPLPPTPTPNPPVVISPCAACKILRRRCAEKCVLAPYFPPTE 67

Query: 71  PLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQ 130
           P KFTIAHRVFGASNIIK LQ+LP+SQRADAVSS+VYEASARIRDPVYGCAGAIC LQKQ
Sbjct: 68  PAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQ 127

Query: 131 INELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPMSPLPDHRSLDNNFNIATPQS 190
           +NELQA+LAK QAELVN+ C QANLVALIC E+ Q+    SP    +SLD+NF  ++  S
Sbjct: 128 VNELQAQLAKAQAELVNMQCQQANLVALICMEMTQSNDQGSP---QQSLDHNFITSSHGS 187

Query: 191 YQGYTSLFEDS----NIWDPLWT 203
            QG  S  +D+    ++W+PLWT
Sbjct: 188 NQGNISFLDDTTTLGSLWEPLWT 207

[Close]

BLAST of ClCG03G002370.1 vs. TrEMBL
Match: A0A067LHN9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05582 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 2.8e-67
Identity = 142/214 (66.36%), Postives = 166/214 (77.57%), Query Frame = 1


Query: 1   MESSEPKSSPTS----TNLLSQSSPSSP------SPPPSVQAAVVVSPCAACKILRRRCA 60
           ME SE  +S T+    TN  S SS +SP      +PPP V   VVVSPCAACKILRRRCA
Sbjct: 1   MEYSEAAASNTAAAAATNSSSPSSSASPPQTPTFTPPPPVP--VVVSPCAACKILRRRCA 60

Query: 61  EKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPV 120
           +KCVLAPYFPP++P KFTIAHRVFGASNIIK LQ+LP+SQRADAVSS+VYEASARIRDPV
Sbjct: 61  DKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPV 120

Query: 121 YGCAGAICQLQKQINELQAELAKTQAELVNIHCHQANLVALICK--ELAQTPPPMSPLPD 180
           YGCAGAIC LQKQI+ELQA+LAK QAELVN+ C QANLVA++C   E+AQ+P   S    
Sbjct: 121 YGCAGAICHLQKQISELQAQLAKAQAELVNMQCQQANLVAILCNCMEMAQSPQQSS---- 180

Query: 181 HRSLDNNFNIATPQSYQGYTSLFEDSNIWDPLWT 203
            +S+DN   I+TPQSYQ      ++SN+W+PLWT
Sbjct: 181 EQSVDN--FISTPQSYQSNPCFIDESNLWEPLWT 206

[Close]

BLAST of ClCG03G002370.1 vs. TrEMBL
Match: A0A068UL04_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028065001 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.7e-67
Identity = 139/208 (66.83%), Postives = 167/208 (80.29%), Query Frame = 1


Query: 1   MESSEPKSSPTSTNLLSQS-SPSSPSPPPSVQA-AVVVSPCAACKILRRRCAEKCVLAPY 60
           M  S+  ++ T T+  S+S SPSSPS PP+    AVVVSPCAACKILRRRCAEKCVLAPY
Sbjct: 1   MGYSDTTTATTITSKSSRSVSPSSPSSPPTPPPPAVVVSPCAACKILRRRCAEKCVLAPY 60

Query: 61  FPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPVYGCAGAIC 120
           FPP+DP+KFT AHRVFGASNIIK LQ+LP+SQRADAVSS+VYEA+AR+RDPVYG AGAIC
Sbjct: 61  FPPNDPIKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARLRDPVYGSAGAIC 120

Query: 121 QLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPMSPLPDHRSLDNNFNI 180
           QLQKQ+N+LQA+LAKTQAELVN+ C QANL+ALIC E+AQ+P   S  P  +S DNNF  
Sbjct: 121 QLQKQVNDLQAQLAKTQAELVNMQCQQANLMALICMEMAQSPQASS--PQQQSFDNNFIN 180

Query: 181 ATPQ--SYQGYTSLFEDSNIWD--PLWT 203
           ++ Q  ++Q   +L +DS+ WD   LWT
Sbjct: 181 SSSQLAAFQANLNLLDDSHPWDHPALWT 206

[Close]

BLAST of ClCG03G002370.1 vs. TrEMBL
Match: A0A061GTD1_THECC (LOB domain-containing protein 1 OS=Theobroma cacao GN=TCM_041094 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 6.3e-67
Identity = 135/202 (66.83%), Postives = 159/202 (78.71%), Query Frame = 1


Query: 8   SSPTSTNLLSQSSPSSPSPPPSVQAA---VVVSPCAACKILRRRCAEKCVLAPYFPPSDP 67
           SSP S +  S +S SSP PPP    +   VV+SPCAACKILRRRCA+KCVLAPYFPP++P
Sbjct: 22  SSPQSLSPNSSNSSSSPPPPPPTTTSTPPVVISPCAACKILRRRCADKCVLAPYFPPTEP 81

Query: 68  LKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQI 127
            KFTIAHRVFGASNIIK LQ+LP+SQRADAVSS+VYEASARIRDPVYGCAGAICQLQKQ+
Sbjct: 82  AKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQV 141

Query: 128 NELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPMSPLPDHRSLDNNFNIATPQSY 187
           NELQA+LAK QAE+VN+   QANLVAL+C E+AQ+P P S     +S+D    I++P SY
Sbjct: 142 NELQAQLAKAQAEVVNMQLQQANLVALLCVEMAQSPQPNS----QQSVDT--FISSPPSY 201

Query: 188 QGYTSLFEDSN----IWDPLWT 203
           Q      ED+N    +W+PLWT
Sbjct: 202 QSNPGFLEDNNNLGSLWEPLWT 217

[Close]

BLAST of ClCG03G002370.1 vs. TAIR10
Match: AT2G28500.1 (AT2G28500.1 LOB domain-containing protein 11)

HSP 1 Score: 215.3 bits (547), Expect = 3.4e-56
Identity = 119/218 (54.59%), Postives = 147/218 (67.43%), Query Frame = 1


Query: 3   SSEPKSSPTSTNLLSQSSPSSPSPPPSVQAA----VVVSPCAACKILRRRCAEKCVLAPY 62
           S+  K + T+T + S S  SSP PPPS Q      VV+SPCAACKILRRRCA+KCVLAPY
Sbjct: 16  SAVAKVTETTTPVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCADKCVLAPY 75

Query: 63  FPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPVYGCAGAIC 122
           FPP+DP KFTIAHRVFGASNIIK LQ+LP+SQR DAV+S+VYEA AR+RDPVYGCAGAI 
Sbjct: 76  FPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIY 135

Query: 123 QLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPMSPLPDHR-SLDNNFN 182
            LQ+Q++ELQA+LAKTQ ELV +   +++L+ LI   + QT   +      + S +++F 
Sbjct: 136 HLQRQVSELQAQLAKTQVELVGMQLQRSSLLELI-YNMEQTKLSVQEQGQQKMSFESSFE 195

Query: 183 -----IATPQSYQGYTSLFEDSN--------IWDPLWT 203
                I++P          ED+N         WDPLWT
Sbjct: 196 SGDEFISSPDEESNDLGFLEDNNNNNNSSMSWWDPLWT 232

[Close]

BLAST of ClCG03G002370.1 vs. TAIR10
Match: AT1G07900.1 (AT1G07900.1 LOB domain-containing protein 1)

HSP 1 Score: 213.0 bits (541), Expect = 1.7e-55
Identity = 114/200 (57.00%), Postives = 140/200 (70.00%), Query Frame = 1


Query: 4   SEPKSSPTSTNLLSQSSPSSPSPPPSVQAAVVVSPCAACKILRRRCAEKCVLAPYFPPSD 63
           S+  +S  +T ++S SS    SPPPS+   VV+SPCAACKILRRRCAE+CVLAPYFPP+D
Sbjct: 3   SKSDASVATTPIISSSS----SPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTD 62

Query: 64  PLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQ 123
           P KFTIAHRVFGASNIIK LQ+LP+SQR DAV+S+VYEA ARIRDPVYGCAGAI  LQ+Q
Sbjct: 63  PAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQ 122

Query: 124 INELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPMSPLPDHRSLD-NNFNIATPQ 183
           ++ELQA+LAK Q E+VN+   ++NL+ LI     Q         D+ S + N+      +
Sbjct: 123 VSELQAQLAKAQVEMVNMQFQRSNLLELIYNMDQQQKQEQ----DNMSFESNDLGFLEDK 182

Query: 184 SYQGYTSLFEDSNIWDPLWT 203
           S    + L+     WDPLWT
Sbjct: 183 SNTNSSMLW-----WDPLWT 189

[Close]

BLAST of ClCG03G002370.1 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4)

HSP 1 Score: 154.8 bits (390), Expect = 5.5e-38
Identity = 72/110 (65.45%), Postives = 87/110 (79.09%), Query Frame = 1


Query: 37  SPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVS 96
           SPCAACK+LRRRCA+ CV +PYFP  +P KF   HRVFGASN+ K+LQ+LP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 97  SLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQA 147
           S+VYEA+AR+RDPVYGC GAI  LQ+QI+ LQA+LA  QAE+V++   Q+
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS 121

[Close]

BLAST of ClCG03G002370.1 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 154.8 bits (390), Expect = 5.5e-38
Identity = 70/105 (66.67%), Postives = 86/105 (81.90%), Query Frame = 1


Query: 37  SPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVS 96
           SPCA+CK+LRRRCA+ C+ APYFPP DP KF I H+VFGASN+ K+LQ+LP  QRADAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 97  SLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNI 142
           SLV+EA+AR+RDPVYGC GAI  LQ Q+++LQ +LA  QAE++ I
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCI 111

[Close]

BLAST of ClCG03G002370.1 vs. TAIR10
Match: AT2G40470.1 (AT2G40470.1 LOB domain-containing protein 15)

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-34
Identity = 70/143 (48.95%), Postives = 93/143 (65.03%), Query Frame = 1


Query: 36  VSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAV 95
           ++PCAACK+LRRRCA++C  +PYF P +P KF   H+VFGASN+ K+L ++P+SQRADA 
Sbjct: 43  ITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAA 102

Query: 96  SSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQANLVALICKE 155
           +SLVYEA+ R+RDPVYGC GAI  LQ+Q+  LQAEL   ++E++     +A +  LI   
Sbjct: 103 NSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREA-VATLIVPS 162

Query: 156 LAQ-------------TPPPMSP 166
            +Q              PPP  P
Sbjct: 163 NSQVAGFHNSGGVSVIAPPPQRP 184

[Close]

BLAST of ClCG03G002370.1 vs. NCBI nr
Match: gi|659072131|ref|XP_008463550.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 376.7 bits (966), Expect = 2.5e-101
Identity = 190/205 (92.68%), Postives = 192/205 (93.66%), Query Frame = 1


Query: 1   MESSEPKSSPTSTNLLSQSSPSSPSPPPSVQAAVVVSPCAACKILRRRCAEKCVLAPYFP 60
           MES E KSSPTST LLSQS   SPSPPP+VQA VVVSPCAACKILRRRCAEKCVLAPYFP
Sbjct: 1   MESREVKSSPTST-LLSQSPSPSPSPPPTVQAPVVVSPCAACKILRRRCAEKCVLAPYFP 60

Query: 61  PSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQL 120
           PSDPLKFTIAHR+FGASNIIKLL DLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQL
Sbjct: 61  PSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQL 120

Query: 121 QKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPMSP---LPDHRSLDNNFN 180
           QKQINELQAELAKTQAELVNIHCHQ NLVALICKELAQTPPPMS    LPDHRSLDNNFN
Sbjct: 121 QKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNNFN 180

Query: 181 IATPQSYQGYTSLFEDSNIWDPLWT 203
           IATPQSYQGYTSLFEDSNIWDPLWT
Sbjct: 181 IATPQSYQGYTSLFEDSNIWDPLWT 204

[Close]

BLAST of ClCG03G002370.1 vs. NCBI nr
Match: gi|449459130|ref|XP_004147299.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus])

HSP 1 Score: 360.9 bits (925), Expect = 1.4e-96
Identity = 185/208 (88.94%), Postives = 193/208 (92.79%), Query Frame = 1


Query: 1   MESSEPKSSPTSTNLLSQS-SPS-SPSPPPSVQAAVVVSPCAACKILRRRCAEKCVLAPY 60
           MES++ KSSPTST LLS S SPS SPSPPP+VQA VVV+PCAACKILRRRC +KCVLAPY
Sbjct: 1   MESTDTKSSPTSTLLLSHSPSPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPY 60

Query: 61  FPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPVYGCAGAIC 120
           FPPSDPLKFTIAHR+FGASNIIKLL DLPDSQRADAVSSLVYEASARIRDPVYGCAGAIC
Sbjct: 61  FPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAIC 120

Query: 121 QLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPMSP---LPDHRSLDNN 180
           QLQKQINELQAELAKTQAELVNIHCHQ NLVALICKELAQTPPPMS    LP+HRSLDN+
Sbjct: 121 QLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRSLDNS 180

Query: 181 FNI-ATPQSYQGYTSLFEDSNIWDPLWT 203
           FNI ATPQSYQGYTSLF DSNIWDPLWT
Sbjct: 181 FNIVATPQSYQGYTSLFGDSNIWDPLWT 208

[Close]

BLAST of ClCG03G002370.1 vs. NCBI nr
Match: gi|700209659|gb|KGN64755.1| (hypothetical protein Csa_1G088450 [Cucumis sativus])

HSP 1 Score: 288.9 bits (738), Expect = 6.9e-75
Identity = 144/155 (92.90%), Postives = 147/155 (94.84%), Query Frame = 1


Query: 52  KCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPVY 111
           KCVLAPYFPPSDPLKFTIAHR+FGASNIIKLL DLPDSQRADAVSSLVYEASARIRDPVY
Sbjct: 11  KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVY 70

Query: 112 GCAGAICQLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPMSP---LPD 171
           GCAGAICQLQKQINELQAELAKTQAELVNIHCHQ NLVALICKELAQTPPPMS    LP+
Sbjct: 71  GCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPE 130

Query: 172 HRSLDNNFNI-ATPQSYQGYTSLFEDSNIWDPLWT 203
           HRSLDN+FNI ATPQSYQGYTSLF DSNIWDPLWT
Sbjct: 131 HRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 165

[Close]

BLAST of ClCG03G002370.1 vs. NCBI nr
Match: gi|595829650|ref|XP_007205910.1| (hypothetical protein PRUPE_ppa011528mg [Prunus persica])

HSP 1 Score: 263.8 bits (673), Expect = 2.4e-67
Identity = 138/203 (67.98%), Postives = 160/203 (78.82%), Query Frame = 1


Query: 11  TSTNLLSQS---SPSSPSPP----PSVQAAVVVSPCAACKILRRRCAEKCVLAPYFPPSD 70
           TS+  LSQS   SPSSP PP    P+    VV+SPCAACKILRRRCAEKCVLAPYFPP++
Sbjct: 8   TSSTPLSQSPSSSPSSPPPPLPPTPTPNPPVVISPCAACKILRRRCAEKCVLAPYFPPTE 67

Query: 71  PLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQ 130
           P KFTIAHRVFGASNIIK LQ+LP+SQRADAVSS+VYEASARIRDPVYGCAGAIC LQKQ
Sbjct: 68  PAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQ 127

Query: 131 INELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPMSPLPDHRSLDNNFNIATPQS 190
           +NELQA+LAK QAELVN+ C QANLVALIC E+ Q+    SP    +SLD+NF  ++  S
Sbjct: 128 VNELQAQLAKAQAELVNMQCQQANLVALICMEMTQSNDQGSP---QQSLDHNFITSSHGS 187

Query: 191 YQGYTSLFEDS----NIWDPLWT 203
            QG  S  +D+    ++W+PLWT
Sbjct: 188 NQGNISFLDDTTTLGSLWEPLWT 207

[Close]

BLAST of ClCG03G002370.1 vs. NCBI nr
Match: gi|802551592|ref|XP_012064881.1| (PREDICTED: LOB domain-containing protein 11-like [Jatropha curcas])

HSP 1 Score: 263.1 bits (671), Expect = 4.1e-67
Identity = 142/214 (66.36%), Postives = 166/214 (77.57%), Query Frame = 1


Query: 1   MESSEPKSSPTS----TNLLSQSSPSSP------SPPPSVQAAVVVSPCAACKILRRRCA 60
           ME SE  +S T+    TN  S SS +SP      +PPP V   VVVSPCAACKILRRRCA
Sbjct: 1   MEYSEAAASNTAAAAATNSSSPSSSASPPQTPTFTPPPPVP--VVVSPCAACKILRRRCA 60

Query: 61  EKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPV 120
           +KCVLAPYFPP++P KFTIAHRVFGASNIIK LQ+LP+SQRADAVSS+VYEASARIRDPV
Sbjct: 61  DKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPV 120

Query: 121 YGCAGAICQLQKQINELQAELAKTQAELVNIHCHQANLVALICK--ELAQTPPPMSPLPD 180
           YGCAGAIC LQKQI+ELQA+LAK QAELVN+ C QANLVA++C   E+AQ+P   S    
Sbjct: 121 YGCAGAICHLQKQISELQAQLAKAQAELVNMQCQQANLVAILCNCMEMAQSPQQSS---- 180

Query: 181 HRSLDNNFNIATPQSYQGYTSLFEDSNIWDPLWT 203
            +S+DN   I+TPQSYQ      ++SN+W+PLWT
Sbjct: 181 EQSVDN--FISTPQSYQSNPCFIDESNLWEPLWT 206

The following BLAST results are available for this feature:

BLAST of ClCG03G002370.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LBD11_ARATH	6.1e-55	54.59	LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2	[more]
LBD1_ARATH	3.0e-54	57.00	LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1	[more]
LBD4_ARATH	9.8e-37	65.45	LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1	[more]
LBD12_ARATH	9.8e-37	66.67	LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2	[more]
LBD15_ARATH	2.3e-33	48.95	LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2	[more]

BLAST of ClCG03G002370.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS55_CUCSA	4.8e-75	92.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G088450 PE=4 SV=1	[more]
M5W070_PRUPE	1.7e-67	67.98	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011528mg PE=4 SV=1	[more]
A0A067LHN9_JATCU	2.8e-67	66.36	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05582 PE=4 SV=1	[more]
A0A068UL04_COFCA	3.7e-67	66.83	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028065001 PE=4 SV=1	[more]
A0A061GTD1_THECC	6.3e-67	66.83	LOB domain-containing protein 1 OS=Theobroma cacao GN=TCM_041094 PE=4 SV=1	[more]

BLAST of ClCG03G002370.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28500.1	3.4e-56	54.59	LOB domain-containing protein 11	[more]
AT1G07900.1	1.7e-55	57.00	LOB domain-containing protein 1	[more]
AT1G31320.1	5.5e-38	65.45	LOB domain-containing protein 4	[more]
AT2G30130.1	5.5e-38	66.67	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G40470.1	1.3e-34	48.95	LOB domain-containing protein 15	[more]

BLAST of ClCG03G002370.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072131\|ref\|XP_008463550.1\|	2.5e-101	92.68	PREDICTED: LOB domain-containing protein 1-like [Cucumis melo]	[more]
gi\|449459130\|ref\|XP_004147299.1\|	1.4e-96	88.94	PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus]	[more]
gi\|700209659\|gb\|KGN64755.1\|	6.9e-75	92.90	hypothetical protein Csa_1G088450 [Cucumis sativus]	[more]
gi\|595829650\|ref\|XP_007205910.1\|	2.4e-67	67.98	hypothetical protein PRUPE_ppa011528mg [Prunus persica]	[more]
gi\|802551592\|ref\|XP_012064881.1\|	4.1e-67	66.36	PREDICTED: LOB domain-containing protein 11-like [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006536	glutamate metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
cellular_component	GO:0005951	carbamoyl-phosphate synthase complex
molecular_function	GO:0004088	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG03G002370	ClCG03G002370	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG03G002370.1	ClCG03G002370.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G002370.1.five_prime_UTR1	ClCG03G002370.1.five_prime_UTR1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G002370.1.cds1	ClCG03G002370.1.cds1	CDS
ClCG03G002370.1.cds2	ClCG03G002370.1.cds2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G002370.1.three_prime_UTR1	ClCG03G002370.1.three_prime_UTR1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 38..135 score: 1.7
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 37..138 score: 26
None	No IPR available	unknown	Coil	Coil	coord: 117..144 scor
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 12..201 score: 1.5E
None	No IPR available	PANTHER	PTHR31301:SF6	SUBFAMILY NOT NAMED	coord: 12..201 score: 1.5E