ClCG03G001960.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G001960.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	THO complex subunit
Location	CG_Chr03 : 2137917 .. 2142469 (-)
Sequence length	2257

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCAATTGGTCTCTTCCCGGGTTGCTCACAACATCACGTCGTTCCGTCGGAACCCTAGAAATTGTCTGTCCTCTCTGAATCTCTGATCCACCACCAATGGCAGAGCCTCTCGACATGAGCTTGGATGATATCATCAAGAAGAACAAGAAACCCGGATCTTCAAACTTCAGAGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCTTCTCGCCGCTTTCGCAATCGCGGTCTTAATAGACCAGCGCCCTATTCTACTGCCAAGGTGAAGGATTTGGGTTTTAACATCCCGATTTCGCTGAATCTTACTACCATCGCCATCCTCTACCTCTTCTTCTTCTACTACTACTACTACTTCTACTGCCAGTTTCTCATTCTTTTCAAAACGGACTTGGGTATTTTCTTTTTTTAATGTTTTCAAAAACATGGGGGTTTAGGCGCCCGAGACGGCTTGGTCACACGAAATGTTTGTAGATCACGGTGCGGCATATCCTTCACAGCCTCCACGGGCCTCTGCTATTGAAACTGGCACCAAGCTTTATGTTTCTAATTTGGATTATGGTGTCTCCAACGAGGACATCAAGGTATTTCAGTTTTGGATTTGAGATTTCGAACATGAGTGTTCTTGTTTTCTTTGTCTTGTATGTATCGCTAAGGCTTGATTCTAATTTTATATGCAGGAACTCTTTTCTGAAGTTGGTGATCTCAAACGATATTCTATCAATTATGATAAAAGTGGGAGATCAAAGGTGTGTTTTGAGTGTGCCATACACAAGGGCTCTTTTATGCTTTTAGCCACATCCTTACATTTGTTTGGATATTTATTCTTCTTAGGGAACAGCAGAAATTGTTTTTTCACGACAATCAGATGCCCTTGCTGCTATAAAGAGATATAACAATGTTCAGCTAGATGGGAAACCCATGAAGTTGGAGATCGTGGGATCTAACATCGTGACACCAGCTGTGCCTGCATCTACAAATCCCAGTTTTGGGAATCCAAATGGATTTCCGAGAGGGTATACATTTCTTCAATTCACTTGTTCTTATTTCTAATTTTTTTTTTTTTTTATTTACGTTTACAATTGCAATCATCTATTAACACAGTTAATGGTATATGTTCAGAAGTCGATACAAATTTTATTTGCTTTACAATAACTTTGTAAGGCCATGATTCGAACAATTGTTTCCTAGAGTTGTACTGGGGTTTAATGTGGATTTTTGGACATTTTCTTGTTGTTCTGACTTACTTTATAGTCAAATCGCTTTTCATTACTTTTTGACACGCCCGCCAAAAGTTTTGAAAAGATCAGATCAGACATAAGAATATTCAATTTCAACAGATTGAGATATGTGTGTACAGTGTACTTAGAGGAGGTATTTTTCTTGTAACACTAAGGATGTAGTAAATAACCCAGGGGGTTCCAACTAAGGAATGTTTTTTTGAGGGGGTGCTTTTGTGGGCTTATGCCCTCGTATTCTTTCATTTTTTCTCGGTGAAAGTTGTTGATTCAATAATAATAAAAATAAATAAAATAAAATAAAATAAAATAAAAGGTGGTAAATTTTAAATCAATATTATGTGTCTTGAAGAAAGAGGGTTGAACTTGTATGAGGAAAAGAGTGAATATAGAGGGGAAAAGGTAAGAGAAAGCACATACACACCCATGTGCACACGTATCTATATTTATAATGAACAACTGAACTTTCAAAGGTAAAAGAATTCAAGTGCATAAAAAAGAAAAAAAGAGCCCACAAAAGGAGGCAAACTAAACATAAATTGTATCCATGATTGTCAATTTTGTTTGTGATGACAATGTGTTTCTAGGTGCTTGTGCATACAACAGTTTTTATTTTACGGCATGTAATTAGCTACTTTTTAATCTTTATTAATATTCTTTTTAACAACTGTGGGTGTCTGATGTATCAGGAAAAGCAAAAAAAAGAAAGAAAAAAAAACACAACTGGGGTGTCTGACCAACTTATTCACACCTTGGCTAATAGTATAAAAAGAAAACCACATAAACCTACCTCTGGTGTTGGAAAACTGGGTATAAGTATCTTTAGGTATTTGAGTGTAGGTCTACAATTCATCTATTTGATCACTACAAAAATTTGTTGTGGATTAAACTTACAAGATTCTCCCGACATTAAGGGTTCGAGTTTTACCACATTTTATGCAAGAACTTGATTTGGATTCCTTCTTTTGGACATTAAACCTTATAGAAAAGAGTCTAGATAATGATAACTTGGATAGTCTAGTGACCGAGTTTATTGAATTAAAGATGAAACATTGAGTTACAAGAAATAAGTTTTTGCGGCATTGTGGGGGGTGTGTGCTATTATGTGGGGCCATTTGGAGGGAGAAATAATAGGATCTTTAGAGGGCTTGTGAGGTCTTTGGTAGTTATGTTGTGCACATGATCATGCATTTGCTTGTGTAGATTTTGATAGGAATGCAATAAGGAATGGTAAAAGGGCATATTAGTAATTAGGGTAGGTGGTTATGGAAGATGGAGAAAGGAAGGAGGGAGTTAGGCATCTGGTGAGTAAACTAGGTGCAAGTATCTTGAATTTTACTTGTGTCTTGTAATTTCTTCTTGATATTGCAACATATTAGTTTCCTATATTTTTCTGTGTTTGGATACCAACATATTTCAATTTTATGAATGACCCTGTCCTTTTTATGCTTCAGTTGGTGCTAAAGTATGATCTGGTAGTTATGTTTTATGTATTTTAAATGAAATTGCTGAATTCTAGCCTTTTCACCGATTTTGATTGCTATTATTAATTCTCTTAATCAGCATATATTTAATAATTCTCATTTGATTTTAACAGTGGACGTGTACTGGGTCGAAACCGGGGTGGTGGACGAGGACGTGGTCCTGGAAGAGGAGGGCGTGGACGTGGGAGTGGGAGTGGGAGTGGCAGAGGTCGTGGAGAGAAGTTATCAGCTGAAGATCTAGATGCTGATTTGGAGAAGTACCATGAAGAAGCGATGCAGATCAATTAAATCATTTGGTGTCATTTTCTGGGGGCTTGATATCCCTAACTTCATTAGGTGCTTGATGATAAACGTGATAAGGACACAGTTTTCTATTTTGTGAGTCATATCATGAAGCCCTGACCTTGAGAGAACTGCTAGACCTTGCTAGGATGTGGAGTTTGGGCTTGAATTGTTGTTTGTTGCAGTAAACTATAAAGAGGTGTTCATATATGCTTGAATTTGTAATCTCCCGTTACTTATCTATTTTAATCTGCTCCAATCCTATTTATTTTCCATGAAAGTTGCACTGGAACTGGGAAAGTCGCTCACACTCCTTGTCTACATGGAAGGATTTGGGGTGCATGACATGGGAAGTATTGGTCCTAACAAACTCAACCACATCTTCTGGTGTTGAGGCCAAAGTTCTGGTACACCGTTTCTAAATCATAATTCCTTGTTAGAATGATAGATAACAGATATAGCTGACAATCTATTCTGTCTATGTTAATTATTGGGTTCTGACTGCAGAATTTCTACTTTATGGCATTGCAGCGATTGGTTTTATGAATTAAAAGTAATGTGTTAAGATCTTCTACTTGTTGGCATGGAGAGGGAGGGAGGGGTGTGGAGATGATTACAAACTGTTCAGGAGTTGCCATTGACTTTTGAGGCCCCTGAACCATAGAGTTAGAATTGGTATGCAATTAGAAATCCATGGTGCTTTTACCTTTGTTTCACTAGTGTGTATGGCTTTTACGTTCCTGTGGTTATAGCATGACTACTATAGGATGCAGTCTTGTTTCTTCTGCTAATTTTGTTTGAGATTATTCCAGAACTTTTCATTCAATAAATAGAAAGCAAGACATAGCATTCAAGAATTTTAGCGTTTTGCAATTTTGAGTCTCTTTTCTGTTTTTCATGTTAACTTATCAAATTTTATCTCTTAGATTTTGTTTCTATATTGTGGTTATCATTCAGATTTCTATATTTTCACTTATGTTTCACGTTTAGTTTCCACATTTTTTGAAGAAATGTAGATGATTGAACATTAGGAGAGTCGTTTTCGATTCAATTGAAACATCAAGTCTAAACTTCATTCCCCTAAATCATAGGGCTGAAACAATGAATTTGCTCCAATCCTTGCAATAGATTTTGACAGAAGTAGAATTAATAAGCTGGAAATATTTGAAGCCTTTACATCTTGCTTGACCTTGCATCTCTGCATACTTATGGATGGATGAGGATTGGGAAGCTTCCTTTAAATGTAGACGAAGGGAAGTTCTGGAAGCCATTGGTTGGCTACTACTCTTGCTATCTCAAGACTTTGGGGTTCAATGCATGGGATGGTACTAGTGGTGGTATAATAGTATGTATTGAAACCTCTATGCCAAATGAAACAGCTTTGCAGGAAAGGATTATCAATTCTATTTGAAGCATGTGAGGGAAATTATTAGTTGGGGATTTGTAGGGGTTCTTGCAGCTTTGAAATGATGAGAAGTGCTTTCATTTTTTTGCATCTCTTACAGATGGGTTAGGTAGCTGTGGCCTTGTGGTATTTTCTGTCTAATGAGTGC

mRNA sequence

CGCAATTGGTCTCTTCCCGGGTTGCTCACAACATCACGTCGTTCCGTCGGAACCCTAGAAATTGTCTGTCCTCTCTGAATCTCTGATCCACCACCAATGGCAGAGCCTCTCGACATGAGCTTGGATGATATCATCAAGAAGAACAAGAAACCCGGATCTTCAAACTTCAGAGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCTTCTCGCCGCTTTCGCAATCGCGGTCTTAATAGACCAGCGCCCTATTCTACTGCCAAGGCGCCCGAGACGGCTTGGTCACACGAAATGTTTGTAGATCACGGTGCGGCATATCCTTCACAGCCTCCACGGGCCTCTGCTATTGAAACTGGCACCAAGCTTTATGTTTCTAATTTGGATTATGGTGTCTCCAACGAGGACATCAAGGAACTCTTTTCTGAAGTTGGTGATCTCAAACGATATTCTATCAATTATGATAAAAGTGGGAGATCAAAGGGAACAGCAGAAATTGTTTTTTCACGACAATCAGATGCCCTTGCTGCTATAAAGAGATATAACAATGTTCAGCTAGATGGGAAACCCATGAAGTTGGAGATCGTGGGATCTAACATCGTGACACCAGCTGTGCCTGCATCTACAAATCCCAGTTTTGGGAATCCAAATGGATTTCCGAGAGGTGGACGTGTACTGGGTCGAAACCGGGGTGGTGGACGAGGACGTGGTCCTGGAAGAGGAGGGCGTGGACGTGGGAGTGGGAGTGGGAGTGGCAGAGGTCGTGGAGAGAAGTTATCAGCTGAAGATCTAGATGCTGATTTGGAGAAGTACCATGAAGAAGCGATGCAGATCAATTAAATCATTTGGTGTCATTTTCTGGGGGCTTGATATCCCTAACTTCATTAGGTGCTTGATGATAAACGTGATAAGGACACAGTTTTCTATTTTGTGAGTCATATCATGAAGCCCTGACCTTGAGAGAACTGCTAGACCTTGCTAGGATGTGGAGTTTGGGCTTGAATTGTTGTTTGTTGCAGTAAACTATAAAGAGGTGTTCATATATGCTTGAATTTGTAATCTCCCGTTACTTATCTATTTTAATCTGCTCCAATCCTATTTATTTTCCATGAAAGTTGCACTGGAACTGGGAAAGTCGCTCACACTCCTTGTCTACATGGAAGGATTTGGGGTGCATGACATGGGAAGTATTGGTCCTAACAAACTCAACCACATCTTCTGGTGTTGAGGCCAAAGTTCTGCGATTGGTTTTATGAATTAAAAGTAATGTGTTAAGATCTTCTACTTGTTGGCATGGAGAGGGAGGGAGGGGTGTGGAGATGATTACAAACTGTTCAGGAGTTGCCATTGACTTTTGAGGCCCCTGAACCATAGAGTTAGAATTGGTATGCAATTAGAAATCCATGGTGCTTTTACCTTTGTTTCACTAGTGTGTATGGCTTTTACGTTCCTGTGGTTATAGCATGACTACTATAGGATGCAGTCTTGTTTCTTCTGCTAATTTTGTTTGAGATTATTCCAGAACTTTTCATTCAATAAATAGAAAGCAAGACATAGCATTCAAGAATTTTAGCGTTTTGCAATTTTGAGTCTCTTTTCTGTTTTTCATGTTAACTTATCAAATTTTATCTCTTAGATTTTGTTTCTATATTGTGGTTATCATTCAGATTTCTATATTTTCACTTATGTTTCACGTTTAGTTTCCACATTTTTTGAAGAAATGTAGATGATTGAACATTAGGAGAGTCGTTTTCGATTCAATTGAAACATCAAGTCTAAACTTCATTCCCCTAAATCATAGGGCTGAAACAATGAATTTGCTCCAATCCTTGCAATAGATTTTGACAGAAGTAGAATTAATAAGCTGGAAATATTTGAAGCCTTTACATCTTGCTTGACCTTGCATCTCTGCATACTTATGGATGGATGAGGATTGGGAAGCTTCCTTTAAATGTAGACGAAGGGAAGTTCTGGAAGCCATTGGTTGGCTACTACTCTTGCTATCTCAAGACTTTGGGGTTCAATGCATGGGATGGTACTAGTGGTGGTATAATAGTATGTATTGAAACCTCTATGCCAAATGAAACAGCTTTGCAGGAAAGGATTATCAATTCTATTTGAAGCATGTGAGGGAAATTATTAGTTGGGGATTTGTAGGGGTTCTTGCAGCTTTGAAATGATGAGAAGTGCTTTCATTTTTTTGCATCTCTTACAGATGGGTTAGGTAGCTGTGGCCTTGTGGTATTTTCTGTCTAATGAGTGC

Coding sequence (CDS)

ATGGCAGAGCCTCTCGACATGAGCTTGGATGATATCATCAAGAAGAACAAGAAACCCGGATCTTCAAACTTCAGAGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCTTCTCGCCGCTTTCGCAATCGCGGTCTTAATAGACCAGCGCCCTATTCTACTGCCAAGGCGCCCGAGACGGCTTGGTCACACGAAATGTTTGTAGATCACGGTGCGGCATATCCTTCACAGCCTCCACGGGCCTCTGCTATTGAAACTGGCACCAAGCTTTATGTTTCTAATTTGGATTATGGTGTCTCCAACGAGGACATCAAGGAACTCTTTTCTGAAGTTGGTGATCTCAAACGATATTCTATCAATTATGATAAAAGTGGGAGATCAAAGGGAACAGCAGAAATTGTTTTTTCACGACAATCAGATGCCCTTGCTGCTATAAAGAGATATAACAATGTTCAGCTAGATGGGAAACCCATGAAGTTGGAGATCGTGGGATCTAACATCGTGACACCAGCTGTGCCTGCATCTACAAATCCCAGTTTTGGGAATCCAAATGGATTTCCGAGAGGTGGACGTGTACTGGGTCGAAACCGGGGTGGTGGACGAGGACGTGGTCCTGGAAGAGGAGGGCGTGGACGTGGGAGTGGGAGTGGGAGTGGCAGAGGTCGTGGAGAGAAGTTATCAGCTGAAGATCTAGATGCTGATTTGGAGAAGTACCATGAAGAAGCGATGCAGATCAATTAA

Protein sequence

MAEPLDMSLDDIIKKNKKPGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETAWSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTPAVPASTNPSFGNPNGFPRGGRVLGRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN

Homology

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BLAST of ClCG03G001960.1 vs. Swiss-Prot
Match: THO4A_ARATH (THO complex subunit 4A OS=Arabidopsis thaliana GN=ALY1 PE=1 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 1.0e-72
Identity = 153/250 (61.20%), Postives = 185/250 (74.00%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRG-GASSGPGPSRRFR-NRGLNRPAPYSTAKAPE 60
           M+  LDMSLDD+I KN+K        RG G+ SGPGP+RR   NR   R APY +AKAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TAWSHEMFVDHGAAYPSQPPRASA-IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           + W H+MF D    + S   R+SA IETGTKLY+SNLDYGV NEDIKELF+EVG+LKRY+
Sbjct: 61  STWGHDMFSDRSEDHRSG--RSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTPAVPASTNP 180
           +++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGKPMK+EIVG+N+ T A P S  P
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAP-SGRP 180

Query: 181 SFGNPNGFP-RGGRVL-GRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLE 240
           + GN NG P RGG+   G+ RGGGRG G GRGG GR  G   G+G  EK+SAEDLDADL+
Sbjct: 181 ANGNSNGAPWRGGQGRGGQQRGGGRG-GGGRGGGGR--GRRPGKGPAEKISAEDLDADLD 240

Query: 241 KYHEEAMQIN 246
           KYH   M+ N
Sbjct: 241 KYHSGDMETN 244

[Close]

BLAST of ClCG03G001960.1 vs. Swiss-Prot
Match: THO4B_ARATH (THO complex subunit 4B OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 4.8e-70
Identity = 158/290 (54.48%), Postives = 185/290 (63.79%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKKNKKP----------GSSNFRGRGGASSGPGPSRRFRNRGLNRPAP 60
           M+  LDMSLDDIIK N+KP          G +N  GRGG+ S  GPSRRF NR   R AP
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSTA----KAPETAWSHEMFVDHG---AAYPSQPPRA----SAIETGTKLYVSNLDYGVS 120
           YS      +A +  W +++F       AA+           S+IETGTKLY+SNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKL 180
           NEDIKELFSEVGDLKRY I+YD+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK MK+
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGSNIVTPAVP---------------ASTNPSF-----GNPNGFPRG---GRVLGRNR 240
           EIVG+N+  PA+P                + N +F     GN NG  RG   G  +GR R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

Query: 241 GGGRGRG---PGRGGRGRGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQ 244
           GGG G G    GRG RGRG     GRGR E +SAEDLDA+L+KYH+EAM+
Sbjct: 241 GGGFGGGNFRGGRGARGRGGRGSGGRGRDENVSAEDLDAELDKYHKEAME 290

[Close]

BLAST of ClCG03G001960.1 vs. Swiss-Prot
Match: THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.9e-48
Identity = 119/261 (45.59%), Postives = 151/261 (57.85%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKKNKKP-----GSSNFRGRGGASSGPGPSRR-----------FRNR- 60
           MA+ +DMSLDDIIK N+       G    RGRGG + G GP R             RNR 
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGASRGGRGGRGRGGTARGGGPGRGGVGGGRAGGGPVRNRP 60

Query: 61  ------GLNRPAPYSTAKAPETAWSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYG 120
                 G NRPAPYS  K     W H++F D G          + +ETG KL VSNLD+G
Sbjct: 61  VMARGGGRNRPAPYSRPKQLPEKWQHDLF-DSGFG------AGAGVETGGKLLVSNLDFG 120

Query: 121 VSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPM 180
           VS+ DI+ELF+E G LK+ +++YD+SGRS GTA++ F R++DAL A+K+YN V LDG+PM
Sbjct: 121 VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 180

Query: 181 KLEIVGSNIVTPAVPASTNPSFGNPNGFPRGGRVLGRNRGGGRGRGPGRGGRGRGSGSGS 239
            +++V S I T   PA +     N  G  R   VLG   GGG  RG   G RGR  G G+
Sbjct: 181 NIQLVTSQIDTQRRPAQS----VNRGGMTRNRGVLGGFGGGGNRRGTRGGNRGR--GRGA 240

[Close]

BLAST of ClCG03G001960.1 vs. Swiss-Prot
Match: THO4D_ARATH (THO complex subunit 4D OS=Arabidopsis thaliana GN=ALY4 PE=1 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.3e-46
Identity = 123/290 (42.41%), Postives = 160/290 (55.17%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNF-------RGRGGASSGPGPSRRFRNRGLNRPAPYST 60
           M+  L+M+LD+I+K+ K   S          RGRGG   G GP+RR       RP+ ++ 
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGGGGRGAGPARRGPLAVNARPSSFTI 60

Query: 61  AKAPETA----WSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSE 120
            K         W   +F D   A       AS +E GT+L+V+NLD GV+NEDI+ELFSE
Sbjct: 61  NKPVRRVRSLPWQSGLFEDGLRA-----AGASGVEVGTRLHVTNLDQGVTNEDIRELFSE 120

Query: 121 VGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTP 180
           +G+++RY+I+YDK+GR  GTAE+V+ R+SDA  A+K+YNNV LDG+PM+LEI+G N  + 
Sbjct: 121 IGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSE 180

Query: 181 A-VPASTNPSFGNPNG-------FPRGGRVLGRNRGGGRGRGP----------------- 240
           A +    N +    NG         +GG   GR RGG  GRGP                 
Sbjct: 181 APLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGGG 240

Query: 241 ---GRGG---RGRGSGS---GSGRGRGEK---LSAEDLDADLEKYHEEAM 243
              GRGG   RGRG+G    G GRG G+K    SA DLD DLE YH +AM
Sbjct: 241 MRGGRGGFRARGRGNGGRGRGGGRGNGKKPVEKSAADLDKDLESYHADAM 285

[Close]

BLAST of ClCG03G001960.1 vs. Swiss-Prot
Match: THOC4_MOUSE (THO complex subunit 4 OS=Mus musculus GN=Alyref PE=1 SV=3)

HSP 1 Score: 185.3 bits (469), Expect = 8.2e-46
Identity = 115/265 (43.40%), Postives = 149/265 (56.23%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKKNKKP----GSSNFRGRGGASSGPGPSRR-----------FRNR-- 60
           MA+ +DMSLDDIIK N+      G    RGR G+  G G + +            RNR  
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGAVQAAARVNRGGGPMRNRPA 60

Query: 61  --------GLNRPAPYSTAKAPETAWSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLD 120
                   G NRPAPYS  K     W H++F D G          + +ETG KL VSNLD
Sbjct: 61  IARGAAGGGRNRPAPYSRPKQLPDKWQHDLF-DSGFG------GGAGVETGGKLLVSNLD 120

Query: 121 YGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGK 180
           +GVS+ DI+ELF+E G LK+ +++YD+SGRS GTA++ F R++DAL A+K+YN V LDG+
Sbjct: 121 FGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR 180

Query: 181 PMKLEIVGSNIVTPAVPASTNPSFGNPNGFPRGGRVLGRNRGGGRGRGPGRGGRG--RGS 239
           PM +++V S I T   PA +           RGG    R  GG  G G  RG RG  RG 
Sbjct: 181 PMNIQLVTSQIDTQRRPAQS---------INRGGMTRNRGSGGFGGGGTRRGTRGGSRGR 240

[Close]

BLAST of ClCG03G001960.1 vs. TrEMBL
Match: A0A0A0LUQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G480690 PE=4 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 2.1e-125
Identity = 227/250 (90.80%), Postives = 235/250 (94.00%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           MAEPLDMSLDDIIK NKK GSSNFR RGGASSGPGPSRRFRNRGLNR  PYST+KAPETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETA 60

Query: 61  WSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSH+MFVDHGAAYPS PPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGD+KRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDVKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTPAVPASTNPSFG 180
           DKSGRSKGTAEIVFSRQ+DALAAIKRYNNVQLDGKPMKLEIVG+NIVTPAVPA +N SFG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFG 180

Query: 181 NPNGFPRGGRVLGRNRGGGRGRGPGRG-GRGR----GSGSGSGRGRGEKLSAEDLDADLE 240
           NPNGFPRGGR +GRNRGGGRGRGPGRG GRGR    GSGSGSGRG GEKLSAEDLDADL+
Sbjct: 181 NPNGFPRGGRAMGRNRGGGRGRGPGRGRGRGRGSGSGSGSGSGRGHGEKLSAEDLDADLD 240

Query: 241 KYHEEAMQIN 246
           KYHEEAMQIN
Sbjct: 241 KYHEEAMQIN 250

[Close]

BLAST of ClCG03G001960.1 vs. TrEMBL
Match: A0A067LAK2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05675 PE=4 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 1.6e-96
Identity = 184/250 (73.60%), Postives = 205/250 (82.00%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           M+  LDMSLDDIIK NKKPGS N RGRG AS GPGP+RRF NR  NR APYSTAKAPET 
Sbjct: 1   MSSALDMSLDDIIKSNKKPGSGNSRGRGRAS-GPGPTRRFTNRVANRAAPYSTAKAPETT 60

Query: 61  WSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           W H+MF D G  Y  Q  RASAIETGTKLY+SNL+YGVSNEDIKELFSEVGDLKRY+I+Y
Sbjct: 61  WQHDMFTDQGMGYAGQGGRASAIETGTKLYISNLEYGVSNEDIKELFSEVGDLKRYTIHY 120

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTPAVPASTNPSFG 180
           D+SGRSKGTAE+VFSR++DALAA+KRYNNVQLDGKPMK+EIVG+NI TPA P++ N +FG
Sbjct: 121 DRSGRSKGTAEVVFSRRTDALAAVKRYNNVQLDGKPMKIEIVGTNIATPAAPSAANGTFG 180

Query: 181 NPNGFPRGGR----VLGRNRGG-GRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLE 240
           + N   RGG+     +GR RGG G GRG GRG RGRG G G G GRGEK+SAEDLDADLE
Sbjct: 181 SSNAVSRGGQGRGGAVGRQRGGSGGGRGFGRG-RGRGRGGGGGGGRGEKVSAEDLDADLE 240

Query: 241 KYHEEAMQIN 246
           KYH EAMQ N
Sbjct: 241 KYHSEAMQTN 248

[Close]

BLAST of ClCG03G001960.1 vs. TrEMBL
Match: M5WJJ8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010358mg PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 9.6e-94
Identity = 180/253 (71.15%), Postives = 208/253 (82.21%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           M +PL+MSLDD+IK +KK GS N RGRG AS GPGP+RR  NR  NR  PY+ AKAPETA
Sbjct: 1   MQDPLNMSLDDLIKTSKKSGSGNARGRGRAS-GPGPARRLPNRAANRTTPYAAAKAPETA 60

Query: 61  WSHEMFVDHGAA-YPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSIN 120
           W H+++ D GAA +P+Q  RASAIETGTKLY+SNLDYGVSNEDIKELFSEVGDLKRY ++
Sbjct: 61  WQHDLYTDQGAAAFPAQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGVH 120

Query: 121 YDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVT----PAVPAST 180
           YD+SGRSKGTAE+VFSR+ DA+AA+KRYNNVQLDGKPMK+EIVG+NI T    P +P + 
Sbjct: 121 YDRSGRSKGTAEVVFSRRPDAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGGPPTLPPAA 180

Query: 181 NPSFGNPNGFPRGGR----VLGRNRGGGRGRGPGRGGRGRGSGSGSGRGR-GEKLSAEDL 240
           N +FGN NG PRGG+      GR RGGG GRGP RGGRGRGSG+G GRGR GEK+SAEDL
Sbjct: 181 NGNFGNSNGVPRGGQSRGGAFGRIRGGG-GRGPRRGGRGRGSGNGGGRGRGGEKVSAEDL 240

Query: 241 DADLEKYHEEAMQ 244
           DA+LEKYH EAMQ
Sbjct: 241 DAELEKYHAEAMQ 251

[Close]

BLAST of ClCG03G001960.1 vs. TrEMBL
Match: A0A061H038_THECC (RNA-binding family protein OS=Theobroma cacao GN=TCM_041883 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 1.4e-92
Identity = 170/245 (69.39%), Postives = 202/245 (82.45%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           M+  L+MSLDD+IK+N+K GS N RGRG   SGPGP+RRF NRG NR  PY+ AKAPET 
Sbjct: 1   MSSALEMSLDDLIKRNRKSGSGNSRGRG-RGSGPGPARRFPNRGANRSGPYTAAKAPETT 60

Query: 61  WSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           W H+M+ D GAA+  Q  RASAIETGTKLY+SNLDYGVSN+DIKELF+EVGDLKR++I+Y
Sbjct: 61  WQHDMYSDKGAAFQGQAGRASAIETGTKLYISNLDYGVSNDDIKELFAEVGDLKRFTIHY 120

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTPAVPASTNPSFG 180
           D+SGRSKGTAE+VFSR++DA+AA+KRYNNVQLDGKPMK+EIVG+N+ TP  P++ N +FG
Sbjct: 121 DRSGRSKGTAEVVFSRRTDAMAAVKRYNNVQLDGKPMKIEIVGTNVATPGAPSAGNGAFG 180

Query: 181 NPNGFPRGGRVLGRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLEKYHEE 240
           N NG PRGG   GR  G G+ RG G GGRG G G G G+GRGEK+SAEDLDA+LEKYH E
Sbjct: 181 NSNGAPRGGH--GRGGGFGKQRG-GGGGRGFGRGRGRGKGRGEKVSAEDLDAELEKYHSE 240

Query: 241 AMQIN 246
           AMQ N
Sbjct: 241 AMQTN 241

[Close]

BLAST of ClCG03G001960.1 vs. TrEMBL
Match: A0A0B0MI65_GOSAR (THO complex subunit 4 OS=Gossypium arboreum GN=F383_23276 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 3.1e-92
Identity = 172/245 (70.20%), Postives = 203/245 (82.86%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           M+  L+MSLDD+IK+++K GS N RGRG   SGPGP+RRF  R  NR  PY+TAKAPET+
Sbjct: 1   MSSALEMSLDDLIKRSRKSGSGNSRGRG-RGSGPGPARRFPKRRANRSTPYTTAKAPETS 60

Query: 61  WSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           W H+M+ D GAA+  Q  RASAIETGTKLY+SNLDYGVSN+D+KELFSEVGDLKR++I+Y
Sbjct: 61  WQHDMYSDKGAAFRGQAGRASAIETGTKLYISNLDYGVSNDDVKELFSEVGDLKRFTIHY 120

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTPAVPASTNPSFG 180
           D+SGRSKGTAE+VFSR++DALAA+KRYNNVQLDGKPMK+EIVG+N+ T AVP++ N +FG
Sbjct: 121 DRSGRSKGTAEVVFSRRADALAAVKRYNNVQLDGKPMKIEIVGANVSTTAVPSAANGTFG 180

Query: 181 NPNGFPRGGRVLGRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLEKYHEE 240
           N NG PRGG+  GR  G GR RG G GGRG G G G GRGRGEK+S EDLDADLEKYH E
Sbjct: 181 NSNGAPRGGQ--GRGVGFGRQRG-GVGGRGSGRGHGRGRGRGEKVSTEDLDADLEKYHSE 240

Query: 241 AMQIN 246
           AMQ N
Sbjct: 241 AMQTN 241

[Close]

BLAST of ClCG03G001960.1 vs. TAIR10
Match: AT5G59950.5 (AT5G59950.5 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 274.2 bits (700), Expect = 7.5e-74
Identity = 153/251 (60.96%), Postives = 185/251 (73.71%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRG-GASSGPGPSRRFR-NRGLNRPAPYSTAKAPE 60
           M+  LDMSLDD+I KN+K        RG G+ SGPGP+RR   NR   R APY +AKAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TAWSHEMFVDHGAAYPSQPPRASA-IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           + W H+MF D    + S   R+SA IETGTKLY+SNLDYGV NEDIKELF+EVG+LKRY+
Sbjct: 61  STWGHDMFSDRSEDHRSG--RSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTPAVPASTNP 180
           +++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGKPMK+EIVG+N+ T A P S  P
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAP-SGRP 180

Query: 181 SFGNPNGFP--RGGRVL-GRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADL 240
           + GN NG P  RGG+   G+ RGGGRG G GRGG GR  G   G+G  EK+SAEDLDADL
Sbjct: 181 ANGNSNGAPWSRGGQGRGGQQRGGGRG-GGGRGGGGR--GRRPGKGPAEKISAEDLDADL 240

Query: 241 EKYHEEAMQIN 246
           +KYH   M+ N
Sbjct: 241 DKYHSGDMETN 245

[Close]

BLAST of ClCG03G001960.1 vs. TAIR10
Match: AT5G02530.1 (AT5G02530.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 265.8 bits (678), Expect = 2.7e-71
Identity = 158/290 (54.48%), Postives = 185/290 (63.79%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKKNKKP----------GSSNFRGRGGASSGPGPSRRFRNRGLNRPAP 60
           M+  LDMSLDDIIK N+KP          G +N  GRGG+ S  GPSRRF NR   R AP
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSTA----KAPETAWSHEMFVDHG---AAYPSQPPRA----SAIETGTKLYVSNLDYGVS 120
           YS      +A +  W +++F       AA+           S+IETGTKLY+SNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKL 180
           NEDIKELFSEVGDLKRY I+YD+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK MK+
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGSNIVTPAVP---------------ASTNPSF-----GNPNGFPRG---GRVLGRNR 240
           EIVG+N+  PA+P                + N +F     GN NG  RG   G  +GR R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

Query: 241 GGGRGRG---PGRGGRGRGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQ 244
           GGG G G    GRG RGRG     GRGR E +SAEDLDA+L+KYH+EAM+
Sbjct: 241 GGGFGGGNFRGGRGARGRGGRGSGGRGRDENVSAEDLDAELDKYHKEAME 290

[Close]

BLAST of ClCG03G001960.1 vs. TAIR10
Match: AT5G37720.1 (AT5G37720.1 ALWAYS EARLY 4)

HSP 1 Score: 188.0 bits (476), Expect = 7.1e-48
Identity = 123/290 (42.41%), Postives = 160/290 (55.17%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNF-------RGRGGASSGPGPSRRFRNRGLNRPAPYST 60
           M+  L+M+LD+I+K+ K   S          RGRGG   G GP+RR       RP+ ++ 
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGGGGRGAGPARRGPLAVNARPSSFTI 60

Query: 61  AKAPETA----WSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSE 120
            K         W   +F D   A       AS +E GT+L+V+NLD GV+NEDI+ELFSE
Sbjct: 61  NKPVRRVRSLPWQSGLFEDGLRA-----AGASGVEVGTRLHVTNLDQGVTNEDIRELFSE 120

Query: 121 VGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTP 180
           +G+++RY+I+YDK+GR  GTAE+V+ R+SDA  A+K+YNNV LDG+PM+LEI+G N  + 
Sbjct: 121 IGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSE 180

Query: 181 A-VPASTNPSFGNPNG-------FPRGGRVLGRNRGGGRGRGP----------------- 240
           A +    N +    NG         +GG   GR RGG  GRGP                 
Sbjct: 181 APLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGGG 240

Query: 241 ---GRGG---RGRGSGS---GSGRGRGEK---LSAEDLDADLEKYHEEAM 243
              GRGG   RGRG+G    G GRG G+K    SA DLD DLE YH +AM
Sbjct: 241 MRGGRGGFRARGRGNGGRGRGGGRGNGKKPVEKSAADLDKDLESYHADAM 285

[Close]

BLAST of ClCG03G001960.1 vs. TAIR10
Match: AT1G66260.1 (AT1G66260.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 179.9 bits (455), Expect = 1.9e-45
Identity = 119/300 (39.67%), Postives = 161/300 (53.67%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKKNKKPGSS------------NFRGRGGASSGPGPSRRFRNRGLNRP 60
           M++ L+M+LD+I+KK+K   S+            + RGRGG +   G  R     G  R 
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGR---GGGPVRR 60

Query: 61  APYSTAKAPETAWSHEMFVDHGAAYPSQPPR-----------ASAIETGTKLYVSNLDYG 120
            P +    P +++S         + P Q               S +E GT +Y++NLD G
Sbjct: 61  GPLAVNTRPSSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLDQG 120

Query: 121 VSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPM 180
           V+NEDI+EL++E+G+LKRY+I+YDK+GR  G+AE+V+ R+SDA+ A+++YNNV LDG+PM
Sbjct: 121 VTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGRPM 180

Query: 181 KLEIVGSNIVTPAVPASTNPSFGNPNGFPR-----GGRVLGRNRGGGRGRGP-------- 240
           KLEI+G N  T + P +   +    NG  +     G  V G   G GRG GP        
Sbjct: 181 KLEILGGN--TESAPVAARVNVTGLNGRMKRSVFIGQGVRGGRVGRGRGSGPSGRRLPLQ 240

Query: 241 ---------GRGG-RGRGSGSGSGR-----GRGEK----LSAEDLDADLEKYHEEAMQIN 246
                    GRGG RGRG G+G GR     GRG K     SA DLD DLE YH EAM I+
Sbjct: 241 QNQQGGVTAGRGGFRGRGRGNGGGRGNKSGGRGGKKPVEKSAADLDKDLESYHAEAMNIS 295

[Close]

BLAST of ClCG03G001960.1 vs. TAIR10
Match: AT1G48920.1 (AT1G48920.1 nucleolin like 1)

HSP 1 Score: 68.2 bits (165), Expect = 8.2e-12
Identity = 58/157 (36.94%), Postives = 71/157 (45.22%), Query Frame = 1


Query: 88  KLYVSNLDYGVSNEDIK----ELFSEVGDLKRYSINYDK-SGRSKGTAEIVFSRQSDALA 147
           K++V   D  +S +DIK    E FS  G++K  S+  D+ +G SKG A + FS       
Sbjct: 402 KIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFS------- 461

Query: 148 AIKRYNNVQLDGKPMKLEIVGSNI----------VTPAVPASTNPSFGNPNG-FPRGG-- 207
                     +GK   LE+ GS++            P   +S    FG  NG F  GG  
Sbjct: 462 ----------EGKEKALELNGSDMGGGFYLVVDEPRPRGDSSGGGGFGRGNGRFGSGGGR 521

Query: 208 -RVLGRNR---GGGRGRGPGRGGRGRGSGSGSGRGRG 223
            R  GR R   GGGRGR  GRG  G G G GS RGRG
Sbjct: 522 GRDGGRGRFGSGGGRGRDGGRGRFGSGGGRGSDRGRG 541

[Close]

BLAST of ClCG03G001960.1 vs. NCBI nr
Match: gi|659115424|ref|XP_008457549.1| (PREDICTED: THO complex subunit 4A [Cucumis melo])

HSP 1 Score: 463.0 bits (1190), Expect = 3.2e-127
Identity = 226/245 (92.24%), Postives = 234/245 (95.51%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           MAEPLDMSLDDIIK NKK GSSNFR RGGASSGPGPSRRFRNRGLNR  PYST+KAPETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETA 60

Query: 61  WSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSH+MFVDHGAAYPS PPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTPAVPASTNPSFG 180
           DKSGRSKGTAEI+FSR +DALAAIKRYNNVQLDGKPMKLEIVG+NIVTPAVPA +N SFG
Sbjct: 121 DKSGRSKGTAEILFSRPADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFG 180

Query: 181 NPNGFPRGGRVLGRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLEKYHEE 240
           N NGFPRGGR +GRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADL+KYHEE
Sbjct: 181 NHNGFPRGGRAMGRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLDKYHEE 240

Query: 241 AMQIN 246
           AMQIN
Sbjct: 241 AMQIN 245

[Close]

BLAST of ClCG03G001960.1 vs. NCBI nr
Match: gi|778661318|ref|XP_004149042.2| (PREDICTED: THO complex subunit 4A [Cucumis sativus])

HSP 1 Score: 456.4 bits (1173), Expect = 3.0e-125
Identity = 227/250 (90.80%), Postives = 235/250 (94.00%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           MAEPLDMSLDDIIK NKK GSSNFR RGGASSGPGPSRRFRNRGLNR  PYST+KAPETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETA 60

Query: 61  WSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSH+MFVDHGAAYPS PPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGD+KRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDVKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTPAVPASTNPSFG 180
           DKSGRSKGTAEIVFSRQ+DALAAIKRYNNVQLDGKPMKLEIVG+NIVTPAVPA +N SFG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFG 180

Query: 181 NPNGFPRGGRVLGRNRGGGRGRGPGRG-GRGR----GSGSGSGRGRGEKLSAEDLDADLE 240
           NPNGFPRGGR +GRNRGGGRGRGPGRG GRGR    GSGSGSGRG GEKLSAEDLDADL+
Sbjct: 181 NPNGFPRGGRAMGRNRGGGRGRGPGRGRGRGRGSGSGSGSGSGRGHGEKLSAEDLDADLD 240

Query: 241 KYHEEAMQIN 246
           KYHEEAMQIN
Sbjct: 241 KYHEEAMQIN 250

[Close]

BLAST of ClCG03G001960.1 vs. NCBI nr
Match: gi|802553469|ref|XP_012064998.1| (PREDICTED: THO complex subunit 4A [Jatropha curcas])

HSP 1 Score: 360.5 bits (924), Expect = 2.3e-96
Identity = 184/250 (73.60%), Postives = 205/250 (82.00%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           M+  LDMSLDDIIK NKKPGS N RGRG AS GPGP+RRF NR  NR APYSTAKAPET 
Sbjct: 1   MSSALDMSLDDIIKSNKKPGSGNSRGRGRAS-GPGPTRRFTNRVANRAAPYSTAKAPETT 60

Query: 61  WSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           W H+MF D G  Y  Q  RASAIETGTKLY+SNL+YGVSNEDIKELFSEVGDLKRY+I+Y
Sbjct: 61  WQHDMFTDQGMGYAGQGGRASAIETGTKLYISNLEYGVSNEDIKELFSEVGDLKRYTIHY 120

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTPAVPASTNPSFG 180
           D+SGRSKGTAE+VFSR++DALAA+KRYNNVQLDGKPMK+EIVG+NI TPA P++ N +FG
Sbjct: 121 DRSGRSKGTAEVVFSRRTDALAAVKRYNNVQLDGKPMKIEIVGTNIATPAAPSAANGTFG 180

Query: 181 NPNGFPRGGR----VLGRNRGG-GRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLE 240
           + N   RGG+     +GR RGG G GRG GRG RGRG G G G GRGEK+SAEDLDADLE
Sbjct: 181 SSNAVSRGGQGRGGAVGRQRGGSGGGRGFGRG-RGRGRGGGGGGGRGEKVSAEDLDADLE 240

Query: 241 KYHEEAMQIN 246
           KYH EAMQ N
Sbjct: 241 KYHSEAMQTN 248

[Close]

BLAST of ClCG03G001960.1 vs. NCBI nr
Match: gi|720013236|ref|XP_010260105.1| (PREDICTED: THO complex subunit 4A [Nelumbo nucifera])

HSP 1 Score: 352.1 bits (902), Expect = 8.1e-94
Identity = 176/249 (70.68%), Postives = 201/249 (80.72%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAK---AP 60
           M+  LDM+L+D+IK NKK G  NFRGRG   SGPGPSRRF NRG NR APYST K   AP
Sbjct: 1   MSSALDMTLEDLIKNNKKSGGGNFRGRG-RGSGPGPSRRFPNRGANRTAPYSTGKPVQAP 60

Query: 61  ETAWSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           ++AW H+MF D  AAYP+Q  R SAIETGTKLY+SNL+YGVSNEDIKELFSEVGDLKRY+
Sbjct: 61  DSAWQHDMFTDQAAAYPAQAARTSAIETGTKLYISNLEYGVSNEDIKELFSEVGDLKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTP-AVPASTN 180
           ++YD+SGRSKGTAE+VFSR++DALAA+KRYNNVQLDGKPMK+E+VG+NI TP AVP + N
Sbjct: 121 VHYDRSGRSKGTAEVVFSRRADALAAVKRYNNVQLDGKPMKIEVVGTNIATPVAVPPAAN 180

Query: 181 PSFGNPNGFPRGGRVLGRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLEK 240
             FGNPNG PR     G+ RGG  GR  G GGRG G G G  R RGE++SAEDLDADLEK
Sbjct: 181 GGFGNPNGVPRS----GQGRGGAMGRSRGGGGRGFGRGRGRRRDRGEQISAEDLDADLEK 240

Query: 241 YHEEAMQIN 246
           YH EAMQIN
Sbjct: 241 YHSEAMQIN 244

[Close]

BLAST of ClCG03G001960.1 vs. NCBI nr
Match: gi|595828879|ref|XP_007205766.1| (hypothetical protein PRUPE_ppa010358mg [Prunus persica])

HSP 1 Score: 351.3 bits (900), Expect = 1.4e-93
Identity = 180/253 (71.15%), Postives = 208/253 (82.21%), Query Frame = 1


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           M +PL+MSLDD+IK +KK GS N RGRG AS GPGP+RR  NR  NR  PY+ AKAPETA
Sbjct: 1   MQDPLNMSLDDLIKTSKKSGSGNARGRGRAS-GPGPARRLPNRAANRTTPYAAAKAPETA 60

Query: 61  WSHEMFVDHGAA-YPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSIN 120
           W H+++ D GAA +P+Q  RASAIETGTKLY+SNLDYGVSNEDIKELFSEVGDLKRY ++
Sbjct: 61  WQHDLYTDQGAAAFPAQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGVH 120

Query: 121 YDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVT----PAVPAST 180
           YD+SGRSKGTAE+VFSR+ DA+AA+KRYNNVQLDGKPMK+EIVG+NI T    P +P + 
Sbjct: 121 YDRSGRSKGTAEVVFSRRPDAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGGPPTLPPAA 180

Query: 181 NPSFGNPNGFPRGGR----VLGRNRGGGRGRGPGRGGRGRGSGSGSGRGR-GEKLSAEDL 240
           N +FGN NG PRGG+      GR RGGG GRGP RGGRGRGSG+G GRGR GEK+SAEDL
Sbjct: 181 NGNFGNSNGVPRGGQSRGGAFGRIRGGG-GRGPRRGGRGRGSGNGGGRGRGGEKVSAEDL 240

Query: 241 DADLEKYHEEAMQ 244
           DA+LEKYH EAMQ
Sbjct: 241 DAELEKYHAEAMQ 251

The following BLAST results are available for this feature:

BLAST of ClCG03G001960.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
THO4A_ARATH	1.0e-72	61.20	THO complex subunit 4A OS=Arabidopsis thaliana GN=ALY1 PE=1 SV=1	[more]
THO4B_ARATH	4.8e-70	54.48	THO complex subunit 4B OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1	[more]
THOC4_TAEGU	3.9e-48	45.59	THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1	[more]
THO4D_ARATH	1.3e-46	42.41	THO complex subunit 4D OS=Arabidopsis thaliana GN=ALY4 PE=1 SV=1	[more]
THOC4_MOUSE	8.2e-46	43.40	THO complex subunit 4 OS=Mus musculus GN=Alyref PE=1 SV=3	[more]

BLAST of ClCG03G001960.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUQ3_CUCSA	2.1e-125	90.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G480690 PE=4 SV=1	[more]
A0A067LAK2_JATCU	1.6e-96	73.60	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05675 PE=4 SV=1	[more]
M5WJJ8_PRUPE	9.6e-94	71.15	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010358mg PE=4 SV=1	[more]
A0A061H038_THECC	1.4e-92	69.39	RNA-binding family protein OS=Theobroma cacao GN=TCM_041883 PE=4 SV=1	[more]
A0A0B0MI65_GOSAR	3.1e-92	70.20	THO complex subunit 4 OS=Gossypium arboreum GN=F383_23276 PE=4 SV=1	[more]

BLAST of ClCG03G001960.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G59950.5	7.5e-74	60.96	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.1	2.7e-71	54.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G37720.1	7.1e-48	42.41	ALWAYS EARLY 4	[more]
AT1G66260.1	1.9e-45	39.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G48920.1	8.2e-12	36.94	nucleolin like 1	[more]

BLAST of ClCG03G001960.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659115424\|ref\|XP_008457549.1\|	3.2e-127	92.24	PREDICTED: THO complex subunit 4A [Cucumis melo]	[more]
gi\|778661318\|ref\|XP_004149042.2\|	3.0e-125	90.80	PREDICTED: THO complex subunit 4A [Cucumis sativus]	[more]
gi\|802553469\|ref\|XP_012064998.1\|	2.3e-96	73.60	PREDICTED: THO complex subunit 4A [Jatropha curcas]	[more]
gi\|720013236\|ref\|XP_010260105.1\|	8.1e-94	70.68	PREDICTED: THO complex subunit 4A [Nelumbo nucifera]	[more]
gi\|595828879\|ref\|XP_007205766.1\|	1.4e-93	71.15	hypothetical protein PRUPE_ppa010358mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR025715	FoP_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG03G001960	ClCG03G001960	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG03G001960.1	ClCG03G001960.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G001960.1.three_prime_UTR2	ClCG03G001960.1.three_prime_UTR2	three_prime_UTR
ClCG03G001960.1.three_prime_UTR1	ClCG03G001960.1.three_prime_UTR1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G001960.1.cds5	ClCG03G001960.1.cds5	CDS
ClCG03G001960.1.cds4	ClCG03G001960.1.cds4	CDS
ClCG03G001960.1.cds3	ClCG03G001960.1.cds3	CDS
ClCG03G001960.1.cds2	ClCG03G001960.1.cds2	CDS
ClCG03G001960.1.cds1	ClCG03G001960.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G001960.1.five_prime_UTR1	ClCG03G001960.1.five_prime_UTR1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 89..158 score: 5.2
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 88..160 score: 1.7
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 87..164 score: 16
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 68..165 score: 4.6
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 56..164 score: 4.62
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 187..238 score: 1.
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 175..245 score: 2.3
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..245 score: 3.1E
None	No IPR available	PANTHER	PTHR19965:SF29	SUBFAMILY NOT NAMED	coord: 1..245 score: 3.1E