ClCG02G010560.1 (mRNA) Watermelon (Charleston Gray)

Overview
NameClCG02G010560.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr02 : 20899180 .. 20901418 (+)
Sequence length684
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCCATGCATAAAGGCAAAGGATCACATGGGGAGGCAAATGTTGCCAGTTTCTCTAAACAGTTCCATAGAGGTTCGACCTTTGGAACGAAGTCTGCTTTTTCCTCTAGCAAAAAGAAATGGAAGAAGAAGAATGGTAATAAGGGTAATAAAACTAACCAAGCTACAAGCCAAAAAGGCAAGCAAAAGGCTAATGTTGCAAAAGGAAATTGTTCCCATTGCAATCAAGATTGACATTAGAAGCAAGACTGCCCCAAATATTTGGCAAAGAAAAAGAAGGCCAAACAAGGTAAATATGATTTACTAGTTTTGAAAACTTGTTTAGTAGAATGATGATTCTGCCTGGATAATTGATTCAGGGGATACTAATCATGTGTGTTTATCTTTACAAGAGATTAGTTCCTAGCAACAACATGGGGATGGCGAGATGACCTTGCGGGTTGGAACAGGGCAGGTCATCTCAGTAGTTGTAATAGGAGACGTCAAATTACTCTTCCATAAATCTTTTCTTTCTTTAAAAAAATATATTTGTAGTTCCTGATTTAAAAAGGAATCTGATTTCTATACAGTGTTTGTTAGAACAGAATTATTCCATCATTTTTAATGTAAATAAAGCGTTTGCATCTAAATGTTTAAAACTGCAAAAACTTAGAAAGAGTAATTTATATGTGCTAAGGCCGTTAGCATCTAAATCGCTTTTAAATACTTAAATGTTCAAAACTGCAAAAACTCAATAGAAAAGACAAAAAATTTCTCCTAAAGTAAATGTTTATTGATAGCACCTAAAATGTGCTATCTTCCTCAGCTTAACTCGAGATCGTAGTGCTATTTAATGTGTCTATTATGTTACTTTGTAGGTTTCAAGCACTTAACAGGTAAAACGGGGTCTTATCAACAAAATCGAGCTAAAATGGACCAAAAAGGAGTTCCACAGCATCAACTGGGAAATAGAACTCCAAAATGACCAAAATGCCCATAAAGCCATGGCGCCGCGGCGCTGCCTAGGCGCGCTGTGGCGATTTTTCCCGAGGAAATTTGCTGGCGAAGCACAGCAGGAGGCGGTGCTCCAAAGGTTTTGTGCAGACAAATTCGCGTTAGCGTCGCGACACTGCGCCAGTTTTTATGAAAAGAAATATTCGGCTTCTAGGTTAAAAAACGCCCGACCAGCCGACTTTTGGCTCCATTCTCTCCTCTTTTCTTCTTTTCATATCTAGGAACTTGAGCCCATTATTGGCTAAGGTAACGTTTTTCTAGCTTGGGTATTAGGGATTTTCCTTGTAATTGATGTTCTTTCGGGGTTTTGAACTTGATTCAAGTGTATACATGATTTAATCCCGAGTTTTTCAAGAATTACGATCAATTTGTAATGCTGGTGTTTATTTTGATTATTTCTTTGATTGTATTACAATTCGTGACAATTTGTTGTATGACAATCATAGGAAGCAATAGGTTAGGTTAGCTTGGAAATCTAGATGGTGATGCACATTATTCTAATCAACCTAGGATTAAATCGATAGAACATTCAATCTAGGTCTATCAAGTTGAGTGTTCCACCTAATTTTCCTTTGAACTTAATGTGGTTAGGTTTAGTCAAATTTTGCATGCTTTTCATCGATTTGCCTTAAATCTAACTTGTCGACTAGGACAATTCAATTATGTCTTTCCAATTGAATTGATTAAGTGCTAGCTTCAATGGATTTAGTAATGACGAACCAATGATAAGAACATCGAACAAAGGAAATCCCACGTAACCCAAGCTAGAGTCTTCTTCAATTGAATTTTAGCTCTTTTTACTTCGCGCAGTTTACTTTTATGCAATTTAAGTTTCTTGCAATCAACCATTTCTCAAACCCCCCTTTGGTTACTTGAATTGAAAACTTTCAATTGTGAAATTCGAGGACTCCCTGTGTTCGACATGGAGGATGTGTAGATTATTGGAATGAATCAAACGTTTCAAAGATTAAAATTTCTGGTTACACTCAGAAAAATAAGAAAGTAAAGAACAGGATAGAAAGCATGGAATAGTTGGCATATGCTTGATCTCTGGAATTCGCCAACTCTGGTTGTGTGATGGGTTCTGTTGTGAGATGGATGATCGGAAGGAAGACTTCTCTCTCGAGTTGTTTGTCTCCAGTTGTCGTATGGGAAGAACTCTGTTTTCACCTAAGAATTTTCCAAGGATTTCCAACAACCCTCTCAGTCTTCCAGTCTACTCTTTTATAAAGGTTGCATTGTAA

mRNA sequence

ATGAGTCCATGCATAAAGGCAAAGGATCACATGGGGAGGCAAATGTTGCCAGTTTCTCTAAACAGTTCCATAGAGGTTCGACCTTTGGAACGAAGTCTGCTTTTTCCTCTAGCAAAAAGAAATGGAAGAAGAAGAATGGTAATAAGGGTAATAAAACTAACCAAGCTACAAGCCAAAAAGGCAAGCAAAAGGCTAATGTTGCAAAAGGAAATTGTTCCCATTGCAATCAAGATTGACATTAGAAGCAAGACTGCCCCAAATATTTGGCAAAGAAAAAGAAGGCCAAACAAGAATGATGATTCTGCCTGGATAATTGATTCAGGGGATACTAATCATCAACAACATGGGGATGGCGAGATGACCTTGCGGGTTGGAACAGGGCAGGCGCGCTGTGGCGATTTTTCCCGAGGAAATTTGCTGGCGAAGCACAGCAGGAGGCGGTGCTCCAAAGGTTTTGTGCAGACAAATTCGCTTGGCATATGCTTGATCTCTGGAATTCGCCAACTCTGGTTGTGTGATGGGTTCTGTTGTGAGATGGATGATCGGAAGGAAGACTTCTCTCTCGAGTTGTTTGTCTCCAGTTGTCGTATGGGAAGAACTCTGTTTTCACCTAAGAATTTTCCAAGGATTTCCAACAACCCTCTCAGTCTTCCAGTCTACTCTTTTATAAAGGTTGCATTGTAA

Coding sequence (CDS)

ATGAGTCCATGCATAAAGGCAAAGGATCACATGGGGAGGCAAATGTTGCCAGTTTCTCTAAACAGTTCCATAGAGGTTCGACCTTTGGAACGAAGTCTGCTTTTTCCTCTAGCAAAAAGAAATGGAAGAAGAAGAATGGTAATAAGGGTAATAAAACTAACCAAGCTACAAGCCAAAAAGGCAAGCAAAAGGCTAATGTTGCAAAAGGAAATTGTTCCCATTGCAATCAAGATTGACATTAGAAGCAAGACTGCCCCAAATATTTGGCAAAGAAAAAGAAGGCCAAACAAGAATGATGATTCTGCCTGGATAATTGATTCAGGGGATACTAATCATCAACAACATGGGGATGGCGAGATGACCTTGCGGGTTGGAACAGGGCAGGCGCGCTGTGGCGATTTTTCCCGAGGAAATTTGCTGGCGAAGCACAGCAGGAGGCGGTGCTCCAAAGGTTTTGTGCAGACAAATTCGCTTGGCATATGCTTGATCTCTGGAATTCGCCAACTCTGGTTGTGTGATGGGTTCTGTTGTGAGATGGATGATCGGAAGGAAGACTTCTCTCTCGAGTTGTTTGTCTCCAGTTGTCGTATGGGAAGAACTCTGTTTTCACCTAAGAATTTTCCAAGGATTTCCAACAACCCTCTCAGTCTTCCAGTCTACTCTTTTATAAAGGTTGCATTGTAA

Protein sequence

MSPCIKAKDHMGRQMLPVSLNSSIEVRPLERSLLFPLAKRNGRRRMVIRVIKLTKLQAKKASKRLMLQKEIVPIAIKIDIRSKTAPNIWQRKRRPNKNDDSAWIIDSGDTNHQQHGDGEMTLRVGTGQARCGDFSRGNLLAKHSRRRCSKGFVQTNSLGICLISGIRQLWLCDGFCCEMDDRKEDFSLELFVSSCRMGRTLFSPKNFPRISNNPLSLPVYSFIKVAL
Homology
[Close]
BLAST of ClCG02G010560.1 vs. NCBI nr
Match: gi|659101494|ref|XP_008451633.1| (PREDICTED: uncharacterized protein LOC103492865 [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-09
Identity = 50/116 (43.10%), Postives = 65/116 (56.03%), Query Frame = 1 

Query: 13  RQMLPVSLNSSIEVRPLERSL-LFPLAKRNGRRRMVIRVIKLTKLQAKKASKRLMLQKEI 72
           RQML +   S IE RPLE SL L  LA R+GRRR V++ IKLT L   +  K  M     
Sbjct: 12  RQMLLLPQESFIEARPLELSLCLLHLALRSGRRRRVVKEIKLTPLLLSQGCKGNMFL--- 71

Query: 73  VPIAIKIDIRSKTAPNIWQRKRRPNKNDDSAWIIDSGDTNHQQHGDGEMTLRVGTG 128
             +  K D R +T  + WQ++R+PNK          G ++ QQ   GEMT++VGTG
Sbjct: 72  --LQPKRDTRRETISSTWQKRRKPNK----------GISSWQQLETGEMTMQVGTG 112

The following BLAST results are available for this feature:
BLAST of ClCG02G010560.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659101494|ref|XP_008451633.1|1.5e-0943.10PREDICTED: uncharacterized protein LOC103492865 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG02G010560ClCG02G010560gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG02G010560.1ClCG02G010560.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG02G010560.1.cds1ClCG02G010560.1.cds1CDS
ClCG02G010560.1.cds2ClCG02G010560.1.cds2CDS
ClCG02G010560.1.cds3ClCG02G010560.1.cds3CDS
ClCG02G010560.1.cds4ClCG02G010560.1.cds4CDS
ClCG02G010560.1.cds5ClCG02G010560.1.cds5CDS