ClCG01G010570.1 (mRNA) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATTTTGAGCAAGTTCTCAATGTCTTTGATTTATTGTGGTTCGAGCATAAAATCTTGAACAAACACCCCTTTTCGAGCAAAGAATTAATGGTGGGAGCCTAGTCGAGGAGGAGGCTTAGAGGGAGAAGAATGAGGGGGTGGGAAAGCAGAAGCCTTTTGGAGTTGGAATTTGAGGAGCTAAAGGGGTTTATGGATATGGGATTTGTTTTCTCAGAAGAAGATAAAGGTTCGAGCTTGGCGTCTATAGTTCCGGGATTGAACAGGCTACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGAAGTTGTATGGTGAAATTTCGAGGCCTTATCTTTCAGAAGCCTGGGAGGCTATGGAGGAACCAGAAGACGAGGAATTGAAGAAGCCATTGATGATGAAATGGAAGTTTTCTTCTAATCAGATTCATATGAAAGTTAATCTCAAATGGTGGGCTCATGCTGTTGCTTCAACTGTTAGATGAGACTACCTTAATTCTTCTATTTTAATTTTTAATAAAATTAGATATTGTGAATCTTCGACTATTAGAGATTAAATTCATATTAATTAAGATTGAGTTAAACTCATATTACCCTCTAATCTAATTTATTGTATATCTCTATTCTAGTTTGTTTTCTTAATTTAAATTGCAAATTCTTGGATTTTCTTAAATTTTGATTTAATTGAAAGCTAATGTATGTATAATATATATTCAGAAATTTTTGGGAAATTGTTGCTTCTTTTTCAACAATATAGATCAACCGTTGTTTTTTGGTATGATAATTAGGATTTCAAAAAATAATAATAATAATTGGACTCTAATCTTTTAAAAGTTTTAATTTCATCTTTTCATGTATATTGATCTTAGACTTCAATTAAGTTCTTGTAATCAATAAATATTAAAAAAAAAAATTGACATGAGTCAATCAATCATTAGTGTACTAATAGTATTAAATTTCTATCAACTTGTCTTCATTTTCATTAATATTTTCACATGTTCATGGGTTCAACCTCAAGTAAGAGTGGATATCGATAATTTCAATTATATCGTAAAGAAGTCGTTGAAATATAAGGGGAAAAAAAAACAAAATATACCTAATGTGAATATAATATAAGCAATAAACATTTTAATTATTAGTAAAGTGTGTAATGTTTTTTTTTAAATTAAATTATCTTTTATTTTTTATTATTTTTCTAAAACTATCCATCAATATCGAACTTTTATTAGTATTTCTGTCGAAGTTTTCGTAAAACTGAGGCCTCGACATTGACAATTAAACCTTGAATGTACCAACACTTTAACGAGTCTTTTTATTTTTATTTTTTATATTATAGTGAGGAGCAATTTCATGTCAAATAAGTACTATGTATTAAACCATATGAAATGAAAAAATTTCCTAGGTGATTAGTCTAGATGTTCAGTTTGAAGTTTTCAATTGTTGCTCTAAGTGGCTTTGGACTTCTCATGTGGGGTACCAAGCGACCAATTCTTCTCCTTGGGATCTTTTCTCTTGAGTCGTGCGTGTCTTTTATCTTTATGTTTGGTTGGTTGTTGTCTTTGTTTCGTTTTTCTTGTTTTTGTGGTGTTTGTTTGTGCCTTGACTTCAGGCTGCGAGGTCTCTCTATCTTTTTAACAATCCAATATCTTAAAACAATTTAATGATTGTTGTGTCTTATTTGAGGGGCTAATTAGAAAAAAAGTATACTTTTTTTTTTTCAAAAAAAAAAGGTAAAATGGGTAGTCTGGAAAAAAAAAATTAGGAAAAGATGGTAGTTTTTTGTCTTTATTTGAATACTGTCTCTTTAAGAGACACATTCAAACTCGGTCAGCACTATCAAACATGGTCACTCTTGGTCAAATCGTGCGTTCTGTTTGGTTTTGAAGGAATGCATCTCTTTAAGAGAGAAACTGTTTAGAGAGAATCTGTTGGTCCCATTTTTAGAGACTTCTTGTGTGGGGGAAGGTTCTTTCTGGGAGATGTTTAGATTTATTGGAATTCTTGGGAAAATAATATTCTCCCGTCAACTTTACGAGAAAGAACCTCATAGCTTGAAGGATAATAGTTGTTATCTTGAAAGAAATAAAAAAGAAGGGAAAAAAAAAATGATTCTGTCAACTTTACGGGAAATTTGACAATCAATCTTTTTTCCTTCTTTCTTTTTAATTTCTTGGTTCTTTTCCTTCCTATTACCTTCCTATTTTTCCGTAAAGGTAGTAGGAAGGTAGTAGGAAGGAAAGGAAAGAAGAAATTAAAAAAATAATAATAAAAAAAAAGGGAAAAAAAATGATTCTATCAAATTTCCCGTAAAGTTGATAAAGTTGAAATTCGTGTTATCAAGGATTTCCCGTAAAGTTGACTGATGAGCTTTATGGGTATCAGGATATCAGGAATTTCCTGATAACATGAAATTCTTGATACTTGTAAAGTTGACTAATCAACTTTACGGGAAATTCATGTTATAAGGAATTTTCTGTAAAATTGGCTGGTCAACTTTACGGGTATCAGGATATCCCTGATAACATGAAATTCCTGATACCCGTAAAGTTGACTAGGATATCAAGATATCAAGAATTTCTTGATAACATGAAATTCCTGATACTCGTATAGTTGACTGGTTAACTTTATGGTAAATTCATGTTATCAAGAATTTCTCGAAAATTTGCCTTGTCAACTTTACGGAAAATTTGACAAAATTATTATTTTTTATTTCTTCTTTACTTTCCTTCCTACTACCTTTATGGGAAGGTAGTAGGAAGGAAAGGAACAAAGAAGTTTAAAAAAAAAAATTGATTCTGTCAAATTTTTCGTAAAGTTGATCAATTTCCCGTAAAGTTGATTGATCAACTTTACGAAAAATTTGACAGAATCAATTTTTCCTCTTTTTTTTTTCTTTCAAGAAAACAACTATTATCCTTTAAGTTATGAGATTTTTTCTAAATTGATTGAAAAATATTATTTTCCCAAGAATTCCAATAAATCTAAACATTTCTTATAAAGAACCTTCCCCACACAAATAAATTAGGAAATTTAAAGTTGAGAGATGCATTAACATGGCTTTAACGCCATGGTTAACACTGATTAAAAAATTAAAAAATAAATAGAATGCATCTCTGAAAGAGACACATTCTAATAAAAACAAAAAAAGTACCATATTTCCCTAATTTCTTTTCAAGTACCTTTTTTATCTAAATTTTTTCTAAAGTACTCTAATCTAATCTAATTGATCCTTATTTGAGCCATATAGTTGACTTTTGTAGCTTGTGTACCATTATTCTTCCAATTTTTTTCTTCTATTGATTTGATATGAACTCGCTTTCTAGGTTGCATGCGGAGTTTAGGTTTAATTCAGCAATTGTAGTGCAAAGTGGTTGCAATTCTTCATAAAGGTTGAAACGGTTGTTTAATCTCTCTCTTCTCTCATATCTTTTTGCCTTAAATCTTTCTCTATTTTTTTTCTACTGTTCTCCAACATTGTAGCTTCTATATTTCAAAAGCACACAACAAATCCAATCATTTTCTTGGTTATCCTTTAGATTGCAAACTTAGAGAGGTCTAATTCCTTTGGTTAATTGATTTATTGTACCCTTCTCTTAGTTTTAGATCATTGTTACTAATTGATAAATATTTATCATTGTTAGAAGTTTGTCTGTGAGAAGCTTTTATCATTGGTAAATTCCATTTATTGTCGAAATTGTTAGTGACAAACTTTTATCAATCATTGCTACTAATAAGAGTTTATCATTGATAGACTTAGACTATGAAATGATGTTTACTAGGGATTGACAACTCCTATCATTTGACTTTGTTTTGGTTATTGTTAGTTTATAGACTACCACGGTGACTAATTGATAGACTTTTATCATGGTTAGAAGTCTATCAGTAATAGCCTTTTATCATTGATAGAACTTCATCAACCATTATTTATTAGTGGCAAACTTCTATCACTGATAAACTTCAATTAGTGATATGAATTTGTCGCTCATAAGCTTTGTATGTGAATGAAGTCTATTAGTGATTGATAAATTTCTATCATTGAGTCATCTGTAATAAGTGTCTACCACTCATTGAAATTCATTAGTTAAGGGTTTGTTTCGCGAGTTGGGTTGGTAATAATTATAGAGGGAGTTAGATTGTTTGGGGGAGTTAGATTATCTGTGTTTTGGGGTGCAGAGTTGA ATGGATTTTGAGCAAGTTCTCAATGTCTTTGATTTATTGTGGTTCGAGCATAAAATCTTGAACAAACACCCCTTTTCGAGCAAAGAATTAATGTCGAGGAGGAGGCTTAGAGGGAGAAGAATGAGGGGGTGGGAAAGCAGAAGCCTTTTGGAGTTGGAATTTGAGGAGCTAAAGGGGTTTATGGATATGGGATTTGTTTTCTCAGAAGAAGATAAAGGCTACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGAAGTTGTATGGTGAAATTTCGAGGCCTTATCTTTCAGAAGCCTGGGAGGCTATGGAGGAACCAGAAGACGAGGAATTGAAGAAGCCATTGATGATGAAATGGAAGTTTTCTTCTAATCAGATTCATATGAAAGTTAATCTCAAATGGTGGGCTCATGCTGTTGCTTCAACTAGTTGA ATGGATTTTGAGCAAGTTCTCAATGTCTTTGATTTATTGTGGTTCGAGCATAAAATCTTGAACAAACACCCCTTTTCGAGCAAAGAATTAATGTCGAGGAGGAGGCTTAGAGGGAGAAGAATGAGGGGGTGGGAAAGCAGAAGCCTTTTGGAGTTGGAATTTGAGGAGCTAAAGGGGTTTATGGATATGGGATTTGTTTTCTCAGAAGAAGATAAAGGCTACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGAAGTTGTATGGTGAAATTTCGAGGCCTTATCTTTCAGAAGCCTGGGAGGCTATGGAGGAACCAGAAGACGAGGAATTGAAGAAGCCATTGATGATGAAATGGAAGTTTTCTTCTAATCAGATTCATATGAAAGTTAATCTCAAATGGTGGGCTCATGCTGTTGCTTCAACTAGTTGA MDFEQVLNVFDLLWFEHKILNKHPFSSKELMSRRRLRGRRMRGWESRSLLELEFEELKGFMDMGFVFSEEDKGYEEEEEEEEEEEEEEEEEEEERKLYGEISRPYLSEAWEAMEEPEDEELKKPLMMKWKFSSNQIHMKVNLKWWAHAVASTS
BLAST of ClCG01G010570.1 vs. Swiss-Prot
Match: RTL1_MOUSE (Retrotransposon-like protein 1 OS=Mus musculus GN=Rtl1 PE=2 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 2.1e-07 Identity = 31/52 (59.62%), Postives = 33/52 (63.46%), Query Frame = 1
HSP 2 Score: 50.4 bits (119), Expect = 2.0e-05 Identity = 28/52 (53.85%), Postives = 31/52 (59.62%), Query Frame = 1
HSP 3 Score: 49.3 bits (116), Expect = 4.4e-05 Identity = 31/68 (45.59%), Postives = 38/68 (55.88%), Query Frame = 1
HSP 4 Score: 48.9 bits (115), Expect = 5.7e-05 Identity = 26/52 (50.00%), Postives = 31/52 (59.62%), Query Frame = 1
HSP 5 Score: 47.4 bits (111), Expect = 1.7e-04 Identity = 28/52 (53.85%), Postives = 31/52 (59.62%), Query Frame = 1
HSP 6 Score: 46.2 bits (108), Expect = 3.7e-04 Identity = 26/52 (50.00%), Postives = 30/52 (57.69%), Query Frame = 1
HSP 7 Score: 45.8 bits (107), Expect = 4.8e-04 Identity = 30/68 (44.12%), Postives = 33/68 (48.53%), Query Frame = 1
HSP 8 Score: 43.9 bits (102), Expect = 1.8e-03 Identity = 25/52 (48.08%), Postives = 30/52 (57.69%), Query Frame = 1
HSP 9 Score: 39.3 bits (90), Expect = 4.5e-02 Identity = 25/79 (31.65%), Postives = 39/79 (49.37%), Query Frame = 1
BLAST of ClCG01G010570.1 vs. Swiss-Prot
Match: TTBK1_MOUSE (Tau-tubulin kinase 1 OS=Mus musculus GN=Ttbk1 PE=1 SV=3) HSP 1 Score: 52.4 bits (124), Expect = 5.2e-06 Identity = 27/46 (58.70%), Postives = 29/46 (63.04%), Query Frame = 1
HSP 2 Score: 47.0 bits (110), Expect = 2.2e-04 Identity = 28/54 (51.85%), Postives = 30/54 (55.56%), Query Frame = 1
BLAST of ClCG01G010570.1 vs. TrEMBL
Match: A0A0G4HCY4_9ALVE (Uncharacterized protein OS=Chromera velia CCMP2878 GN=Cvel_26364 PE=4 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 3.3e-07 Identity = 39/78 (50.00%), Postives = 45/78 (57.69%), Query Frame = 1
BLAST of ClCG01G010570.1 vs. TrEMBL
Match: A0A0G4HCY4_9ALVE (Uncharacterized protein OS=Chromera velia CCMP2878 GN=Cvel_26364 PE=4 SV=1) HSP 1 Score: 43.9 bits (102), Expect = 2.0e-01 Identity = 39/94 (41.49%), Postives = 46/94 (48.94%), Query Frame = 1
HSP 2 Score: 43.5 bits (101), Expect = 2.7e-01 Identity = 38/109 (34.86%), Postives = 52/109 (47.71%), Query Frame = 1
HSP 3 Score: 60.1 bits (144), Expect = 2.8e-06 Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 1
BLAST of ClCG01G010570.1 vs. TrEMBL
Match: A0A0L8HKF3_OCTBM (Uncharacterized protein (Fragment) OS=Octopus bimaculoides GN=OCBIM_22012616mg PE=4 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 1.2e-04 Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 1
HSP 2 Score: 53.5 bits (127), Expect = 2.6e-04 Identity = 36/81 (44.44%), Postives = 43/81 (53.09%), Query Frame = 1
HSP 3 Score: 50.1 bits (118), Expect = 2.9e-03 Identity = 33/70 (47.14%), Postives = 39/70 (55.71%), Query Frame = 1
HSP 4 Score: 48.5 bits (114), Expect = 8.3e-03 Identity = 32/70 (45.71%), Postives = 39/70 (55.71%), Query Frame = 1
HSP 5 Score: 45.1 bits (105), Expect = 9.2e-02 Identity = 38/82 (46.34%), Postives = 45/82 (54.88%), Query Frame = 1
HSP 6 Score: 30.0 bits (66), Expect = 3.1e+03 Identity = 17/39 (43.59%), Postives = 25/39 (64.10%), Query Frame = 1
HSP 7 Score: 60.1 bits (144), Expect = 2.8e-06 Identity = 42/82 (51.22%), Postives = 48/82 (58.54%), Query Frame = 1
BLAST of ClCG01G010570.1 vs. TrEMBL
Match: U6M8N0_EIMMA (Uncharacterized protein OS=Eimeria maxima GN=EMWEY_00053580 PE=4 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 4.4e-04 Identity = 29/49 (59.18%), Postives = 32/49 (65.31%), Query Frame = 1
HSP 2 Score: 58.9 bits (141), Expect = 6.2e-06 Identity = 32/52 (61.54%), Postives = 35/52 (67.31%), Query Frame = 1
BLAST of ClCG01G010570.1 vs. TrEMBL
Match: V5IM75_NEUCR (Uncharacterized protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU12107 PE=4 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 5.2e-05 Identity = 31/52 (59.62%), Postives = 35/52 (67.31%), Query Frame = 1
HSP 2 Score: 52.8 bits (125), Expect = 4.4e-04 Identity = 34/70 (48.57%), Postives = 40/70 (57.14%), Query Frame = 1
HSP 3 Score: 50.4 bits (119), Expect = 2.2e-03 Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 1
HSP 4 Score: 47.8 bits (112), Expect = 1.4e-02 Identity = 30/59 (50.85%), Postives = 34/59 (57.63%), Query Frame = 1
HSP 5 Score: 47.4 bits (111), Expect = 1.9e-02 Identity = 39/105 (37.14%), Postives = 49/105 (46.67%), Query Frame = 1
HSP 6 Score: 40.4 bits (93), Expect = 2.3e+00 Identity = 27/69 (39.13%), Postives = 38/69 (55.07%), Query Frame = 1
BLAST of ClCG01G010570.1 vs. TAIR10
Match: AT2G42760.1 (AT2G42760.1 unknown protein) HSP 1 Score: 94.4 bits (233), Expect = 6.7e-20 Identity = 55/142 (38.73%), Postives = 86/142 (60.56%), Query Frame = 1
BLAST of ClCG01G010570.1 vs. TAIR10
Match: AT4G02810.1 (AT4G02810.1 Protein of unknown function (DUF3049)) HSP 1 Score: 49.7 bits (117), Expect = 1.9e-06 Identity = 29/56 (51.79%), Postives = 30/56 (53.57%), Query Frame = 1
HSP 2 Score: 48.1 bits (113), Expect = 5.5e-06 Identity = 27/49 (55.10%), Postives = 29/49 (59.18%), Query Frame = 1
BLAST of ClCG01G010570.1 vs. TAIR10
Match: AT5G66540.1 (AT5G66540.1 FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 48.9 bits (115), Expect = 3.2e-06 Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 1
BLAST of ClCG01G010570.1 vs. TAIR10
Match: AT5G55660.1 (AT5G55660.1 DEK domain-containing chromatin associated protein) HSP 1 Score: 47.4 bits (111), Expect = 9.4e-06 Identity = 29/58 (50.00%), Postives = 34/58 (58.62%), Query Frame = 1
HSP 2 Score: 35.0 bits (79), Expect = 4.8e-02 Identity = 23/67 (34.33%), Postives = 33/67 (49.25%), Query Frame = 1
HSP 3 Score: 31.2 bits (69), Expect = 7.0e-01 Identity = 16/57 (28.07%), Postives = 34/57 (59.65%), Query Frame = 1
HSP 4 Score: 29.3 bits (64), Expect = 2.6e+00 Identity = 15/29 (51.72%), Postives = 19/29 (65.52%), Query Frame = 1
BLAST of ClCG01G010570.1 vs. NCBI nr
Match: gi|764555838|ref|XP_011460623.1| (PREDICTED: uncharacterized protein LOC105350386 [Fragaria vesca subsp. vesca]) HSP 1 Score: 110.9 bits (276), Expect = 2.0e-21 Identity = 66/145 (45.52%), Postives = 91/145 (62.76%), Query Frame = 1
BLAST of ClCG01G010570.1 vs. NCBI nr
Match: gi|764555838|ref|XP_011460623.1| (PREDICTED: uncharacterized protein LOC105350386 [Fragaria vesca subsp. vesca]) HSP 1 Score: 30.8 bits (68), Expect = 2.6e+03 Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 1
HSP 2 Score: 107.5 bits (267), Expect = 2.2e-20 Identity = 66/120 (55.00%), Postives = 71/120 (59.17%), Query Frame = 1
BLAST of ClCG01G010570.1 vs. NCBI nr
Match: gi|659068861|ref|XP_008446725.1| (PREDICTED: uncharacterized protein LOC103489359 [Cucumis melo]) HSP 1 Score: 90.9 bits (224), Expect = 2.1e-15 Identity = 71/198 (35.86%), Postives = 87/198 (43.94%), Query Frame = 1
HSP 2 Score: 106.3 bits (264), Expect = 4.8e-20 Identity = 62/137 (45.26%), Postives = 82/137 (59.85%), Query Frame = 1
BLAST of ClCG01G010570.1 vs. NCBI nr
Match: gi|823240050|ref|XP_012452657.1| (PREDICTED: nucleolin-like [Gossypium raimondii]) HSP 1 Score: 35.0 bits (79), Expect = 1.4e+02 Identity = 36/144 (25.00%), Postives = 59/144 (40.97%), Query Frame = 1
HSP 2 Score: 102.1 bits (253), Expect = 9.1e-19 Identity = 59/118 (50.00%), Postives = 74/118 (62.71%), Query Frame = 1
BLAST of ClCG01G010570.1 vs. NCBI nr
Match: gi|743911826|ref|XP_010999777.1| (PREDICTED: uncharacterized protein LOC105107522 [Populus euphratica]) HSP 1 Score: 32.0 bits (71), Expect = 1.2e+03 Identity = 13/28 (46.43%), Postives = 18/28 (64.29%), Query Frame = 1
HSP 2 Score: 102.1 bits (253), Expect = 9.1e-19 Identity = 64/145 (44.14%), Postives = 89/145 (61.38%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
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