Carg28055-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg28055-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Flocculation FLO11-like protein
Location	Cucurbita_argyrosperma_scaffold_764 : 8207 .. 8806 (+)
Sequence length	600

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCAGTGGTCGTTGTTGAGCAGCAGCATAGGAACCAATATTATGGTGCTCCATTTGGGTCATTCCCGTCCCGAGACTTCAGAGGGGTGAACTGTAGGAGTTTCCAATCTGGAGCTGGTATACTCCCAACTCCCTCCAAGGCTTCTACCTCTGAAACTGAACACTTCTACCCTTCTTCTCCAAAAACACCACTAACTTGTTTAAGTTCCAACTCCGGAAATGCTAAATCTGGAGCTACTGTGCCAACTGCTCCAATTCCTATCAAACCCAAATTTTTAAACAACAACAGTGTTCTCCATGAAGAATTCTATGATCCAAGTTTCTCGTTCTCTGAGCTTTGGGCTGGACCCACTTATTCAAATTCTCCGCCTCCAAGTTCGTTACCCATTCCCAAATTTTCAGTTGCTAAGAGAACCACGTCTCAGGAGATCCCTCGTTCTGCCCCTGAATTTGATTTGCATCACCCATCTGCCAAGTCTGCACCACCATCCCCAACTCGAGACCAAAACTTTTCCCCCAGATTTTTCTTTCATAATGATGACTCTGCGACTAAGACTCTACGTCGCATTCTTCATCTTGATGTTGACAATGAATGA

mRNA sequence

ATGGAAGCAGTGGTCGTTGTTGAGCAGCAGCATAGGAACCAATATTATGGTGCTCCATTTGGGTCATTCCCGTCCCGAGACTTCAGAGGGGTGAACTGTAGGAGTTTCCAATCTGGAGCTGGTATACTCCCAACTCCCTCCAAGGCTTCTACCTCTGAAACTGAACACTTCTACCCTTCTTCTCCAAAAACACCACTAACTTGTTTAAGTTCCAACTCCGGAAATGCTAAATCTGGAGCTACTGTGCCAACTGCTCCAATTCCTATCAAACCCAAATTTTTAAACAACAACAGTGTTCTCCATGAAGAATTCTATGATCCAAGTTTCTCGTTCTCTGAGCTTTGGGCTGGACCCACTTATTCAAATTCTCCGCCTCCAAGTTCGTTACCCATTCCCAAATTTTCAGTTGCTAAGAGAACCACGTCTCAGGAGATCCCTCGTTCTGCCCCTGAATTTGATTTGCATCACCCATCTGCCAAGTCTGCACCACCATCCCCAACTCGAGACCAAAACTTTTCCCCCAGATTTTTCTTTCATAATGATGACTCTGCGACTAAGACTCTACGTCGCATTCTTCATCTTGATGTTGACAATGAATGA

Coding sequence (CDS)

ATGGAAGCAGTGGTCGTTGTTGAGCAGCAGCATAGGAACCAATATTATGGTGCTCCATTTGGGTCATTCCCGTCCCGAGACTTCAGAGGGGTGAACTGTAGGAGTTTCCAATCTGGAGCTGGTATACTCCCAACTCCCTCCAAGGCTTCTACCTCTGAAACTGAACACTTCTACCCTTCTTCTCCAAAAACACCACTAACTTGTTTAAGTTCCAACTCCGGAAATGCTAAATCTGGAGCTACTGTGCCAACTGCTCCAATTCCTATCAAACCCAAATTTTTAAACAACAACAGTGTTCTCCATGAAGAATTCTATGATCCAAGTTTCTCGTTCTCTGAGCTTTGGGCTGGACCCACTTATTCAAATTCTCCGCCTCCAAGTTCGTTACCCATTCCCAAATTTTCAGTTGCTAAGAGAACCACGTCTCAGGAGATCCCTCGTTCTGCCCCTGAATTTGATTTGCATCACCCATCTGCCAAGTCTGCACCACCATCCCCAACTCGAGACCAAAACTTTTCCCCCAGATTTTTCTTTCATAATGATGACTCTGCGACTAAGACTCTACGTCGCATTCTTCATCTTGATGTTGACAATGAATGA

Protein sequence

MEAVVVVEQQHRNQYYGAPFGSFPSRDFRGVNCRSFQSGAGILPTPSKASTSETEHFYPSSPKTPLTCLSSNSGNAKSGATVPTAPIPIKPKFLNNNSVLHEEFYDPSFSFSELWAGPTYSNSPPPSSLPIPKFSVAKRTTSQEIPRSAPEFDLHHPSAKSAPPSPTRDQNFSPRFFFHNDDSATKTLRRILHLDVDNE

Homology

[Close]

BLAST of Carg28055-RA vs. NCBI nr
Match: KGN47907.1 (hypothetical protein Csa_6G410620 [Cucumis sativus])

HSP 1 Score: 280.0 bits (715), Expect = 6.2e-72
Identity = 149/206 (72.33%), Postives = 160/206 (77.67%), Query Frame = 0


Query: 1   MEAVVVVEQQHRNQYYG-------APFGSFPSRDFRGVNCRSFQSGAGILPTPSKASTSE 60
           MEAVVV+E QHRNQYY        A FGS  SRDFRG+NCRSFQSGAGILPTP KA  SE
Sbjct: 1   MEAVVVIE-QHRNQYYDRVKPHGPARFGSLRSRDFRGMNCRSFQSGAGILPTPLKACNSE 60

Query: 61  TEHFYPSSXXXXXXXXXXXXXXXXXXATVPTAPIPIKPKFLNNNSVLHEEFYDPSFSFSE 120
           TEHFYP S                  AT+ +APIPIKPK  N ++  HEEFYD SFSFSE
Sbjct: 61  TEHFYP-SPKTPPPCLTSNSENRKQLATMRSAPIPIKPKSSNQSNAFHEEFYDRSFSFSE 120

Query: 121 LWAGPTYSNSPPPSSLPIPKFSVAKRTTSQEIPRSAPEFDLHHPSAKSAPPSPTRDQNFS 180
           LWAGPTYSNSPPPSSLPIPKFSVAKRTTS E+ RSAPEF++HHPSAKSAPPSPTRDQNFS
Sbjct: 121 LWAGPTYSNSPPPSSLPIPKFSVAKRTTSLELARSAPEFEMHHPSAKSAPPSPTRDQNFS 180

Query: 181 PRFFFHNDDSATKTLRRILHLDVDNE 200
            RFFFH+ DSATKTLRRIL+LDV NE
Sbjct: 181 ARFFFHSADSATKTLRRILNLDVANE 204

[Close]

BLAST of Carg28055-RA vs. NCBI nr
Match: XP_016900729.1 (PREDICTED: uncharacterized protein LOC107990294 [Cucumis melo])

HSP 1 Score: 278.1 bits (710), Expect = 2.3e-71
Identity = 148/206 (71.84%), Postives = 160/206 (77.67%), Query Frame = 0


Query: 1   MEAVVVVEQQHRNQYYG-------APFGSFPSRDFRGVNCRSFQSGAGILPTPSKASTSE 60
           MEAVVV+E QHRNQYY        A FGS  SRDF G+NCRSFQSGAGILPTP KA TSE
Sbjct: 1   MEAVVVIE-QHRNQYYDRVKPHGPARFGSLRSRDFGGMNCRSFQSGAGILPTPLKACTSE 60

Query: 61  TEHFYPSSXXXXXXXXXXXXXXXXXXATVPTAPIPIKPKFLNNNSVLHEEFYDPSFSFSE 120
           TEHFYP S                  AT  +API IKPK  N ++V HEEFYD SFSFSE
Sbjct: 61  TEHFYP-SPKTPPPFLTSNSENRKQLATARSAPISIKPKLSNQSNVFHEEFYDRSFSFSE 120

Query: 121 LWAGPTYSNSPPPSSLPIPKFSVAKRTTSQEIPRSAPEFDLHHPSAKSAPPSPTRDQNFS 180
           LWAGPTYSNSPPPSSLPIPKFSVAKRTTS E+ RSAPEF++HHPSAKSAPPSPTRDQ+FS
Sbjct: 121 LWAGPTYSNSPPPSSLPIPKFSVAKRTTSLELARSAPEFEMHHPSAKSAPPSPTRDQDFS 180

Query: 181 PRFFFHNDDSATKTLRRILHLDVDNE 200
            R+FFH+ DSATKTLRRIL+LDVDNE
Sbjct: 181 ARYFFHSADSATKTLRRILNLDVDNE 204

[Close]

BLAST of Carg28055-RA vs. NCBI nr
Match: XP_018814708.1 (PREDICTED: uncharacterized protein LOC108986515 [Juglans regia])

HSP 1 Score: 180.6 bits (457), Expect = 5.1e-42
Identity = 109/215 (50.70%), Postives = 130/215 (60.47%), Query Frame = 0


Query: 1   MEAVVVVEQQHRNQYYG-------APFGSFPSRDFRGVNCRSFQSGAGILPTPSKASTSE 60
           ME ++VV  QHRNQYY           GS P+RDFRG+NCRSFQSG GILPTP +  +S 
Sbjct: 1   METILVV-AQHRNQYYSRSKPDGPVRLGSSPARDFRGINCRSFQSGEGILPTPLRTCSSP 60

Query: 61  TEHFYPSS----XXXXXXXXXXXXXXXXXXATVPTAPIPIKPKFLNNNSVLHEEFYDPSF 120
                 SS                       T  ++PI I  K    N    EE  + SF
Sbjct: 61  VAARACSSSFSLSLAETPSGPQNDISVQFKTTATSSPINIDAKVCKKNRAFSEEVANESF 120

Query: 121 SFSELWAGPTYSNSPPPSSLPIPKFSV-AKRTTSQEIPRSAPEFDLHHPSAKSAPPSPTR 180
           SFSE WAGPTYSNSPPPSSLPIPKFS+  KR+ S ++PRSAPE ++H+P AKSAPPSP+R
Sbjct: 121 SFSERWAGPTYSNSPPPSSLPIPKFSILPKRSVSLDLPRSAPEIEMHYPMAKSAPPSPSR 180

Query: 181 DQNFS----PRFFFHNDDSATKTLRRILHLDVDNE 200
               S     R  F + DSATKTLRRIL+LD+D+E
Sbjct: 181 YYTNSTRDITRDIFRSADSATKTLRRILNLDLDDE 214

[Close]

BLAST of Carg28055-RA vs. NCBI nr
Match: PQQ16908.1 (hypothetical protein Pyn_08903 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 171.4 bits (433), Expect = 3.1e-39
Identity = 105/210 (50.00%), Postives = 129/210 (61.43%), Query Frame = 0


Query: 1   MEAVVVVEQQHRNQYYG-------APFGSFPSRDFRGVNCRSFQSGAGILPTPSK-ASTS 60
           ME ++VV +  +NQYY        A +G  PS+DFR +NCR+FQSG GILPTPSK  ST 
Sbjct: 1   METLLVVAEP-KNQYYNRVKPHGPARYGPSPSKDFRAINCRTFQSGTGILPTPSKNCSTP 60

Query: 61  ETEHFYPSSXXXXXXXXXXXXXXXXXXATVPTAPIPIKPKFLNNNSVLHEEFYDPSFSFS 120
            ++    SS                   T         P  +N  S   E+ ++ SFSFS
Sbjct: 61  VSKRACSSSSKITTPSPNKTPILSVGSQTDSKTLGKSNPIAINVKSSKKEKPFNGSFSFS 120

Query: 121 ELWAGPTYSNSPPPSSLPIPKFSV-AKRTTSQEIPRSAPEFDLH--HPSAKSAPPSPTRD 180
           ELWAGP YSNSPPPSSLPIPKFS+  KRT S E+P SA + ++   HP AKSAP SPTR+
Sbjct: 121 ELWAGPAYSNSPPPSSLPIPKFSIRPKRTVSLELPSSASDMEMRPTHPIAKSAPASPTRE 180

Query: 181 QNFSPRFFFHNDDSATKTLRRILHLDVDNE 200
            + S R  FHN DSAT+TLRRIL+LDVD+E
Sbjct: 181 HSSSARALFHNADSATRTLRRILNLDVDDE 209

[Close]

BLAST of Carg28055-RA vs. NCBI nr
Match: ONH93559.1 (hypothetical protein PRUPE_8G238400 [Prunus persica])

HSP 1 Score: 170.6 bits (431), Expect = 5.3e-39
Identity = 104/210 (49.52%), Postives = 129/210 (61.43%), Query Frame = 0


Query: 1   MEAVVVVEQQHRNQYYG-------APFGSFPSRDFRGVNCRSFQSGAGILPTPSK-ASTS 60
           ME ++VV +  +NQYY          +G  PS+DFR +NCR+FQSG GILPTPSK  ST 
Sbjct: 1   METLLVVAEP-KNQYYNRVKPHGPVRYGPSPSKDFRAINCRTFQSGTGILPTPSKNCSTP 60

Query: 61  ETEHFYPSSXXXXXXXXXXXXXXXXXXATVPTAPIPIKPKFLNNNSVLHEEFYDPSFSFS 120
            ++    SS                   +         P  +N  S   E+ ++ SFSFS
Sbjct: 61  VSKRACSSSSKITTPGPNKTPTPSVGSQSDSKTLGKSTPIAINVKSSKKEKPFNGSFSFS 120

Query: 121 ELWAGPTYSNSPPPSSLPIPKFSV-AKRTTSQEIPRSAPEFDLH--HPSAKSAPPSPTRD 180
           ELWAGP YSNSPPPSSLPIPKFS+  KRT S E+P SA + ++H  HP AKSAP SPTR+
Sbjct: 121 ELWAGPAYSNSPPPSSLPIPKFSIRPKRTVSLELPSSASDMEMHPTHPIAKSAPASPTRE 180

Query: 181 QNFSPRFFFHNDDSATKTLRRILHLDVDNE 200
            + S R  FHN DSAT+TLRRIL+LDVD+E
Sbjct: 181 HSSSARDLFHNADSATRTLRRILNLDVDDE 209

[Close]

BLAST of Carg28055-RA vs. TAIR10
Match: AT4G02715.1 (unknown protein)

HSP 1 Score: 117.5 bits (293), Expect = 9.6e-27
Identity = 84/203 (41.38%), Postives = 111/203 (54.68%), Query Frame = 0


Query: 5   VVVEQQHRNQYYGAP------FGSFPSRDFRGVNCRSFQSGAGILPTPSK-ASTSETEHF 64
           ++V  +HR+QYYG        F S PS+ FR +NCR+FQSG G+LP P + +ST  T+  
Sbjct: 4   LIVAVEHRDQYYGKKSLGHDRFRSAPSKTFRQINCRTFQSGVGLLPRPKRTSSTPLTKGA 63

Query: 65  YPSSXXXXXXXXXXXXXXXXXXATVPTAPIPIKPKFLNNNSVLHEEFYDP--SFSFSELW 124
                                  +  T+PIPI     +       EF D   S S+SELW
Sbjct: 64  LSQVQSPRSPKSVLPVFHHPSVDSGRTSPIPIANCRGSQIRRCSSEFVDKRRSLSYSELW 123

Query: 125 AGPTYSNSPPPSSLPIPKFSV-AKRTTSQEIPRSAPEFDLHHPSAKSAPPSPTRDQNFSP 184
           AGPTYSNSPPP+S+PIPKFS+  KRT S   P      D+    AKSAP SPT   + +P
Sbjct: 124 AGPTYSNSPPPASVPIPKFSLQQKRTVSLTFPAPDSAVDIRE-VAKSAPVSPTSSGD-NP 183

Query: 185 RFFFHNDDSATKTLRRILHLDVD 198
              F +  SAT TLRR+L+L+++
Sbjct: 184 ---FRSTVSATMTLRRMLNLELE 201

[Close]

BLAST of Carg28055-RA vs. TrEMBL
Match: tr|A0A0A0KHP6|A0A0A0KHP6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G410620 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 4.1e-72
Identity = 149/206 (72.33%), Postives = 160/206 (77.67%), Query Frame = 0


Query: 1   MEAVVVVEQQHRNQYYG-------APFGSFPSRDFRGVNCRSFQSGAGILPTPSKASTSE 60
           MEAVVV+E QHRNQYY        A FGS  SRDFRG+NCRSFQSGAGILPTP KA  SE
Sbjct: 1   MEAVVVIE-QHRNQYYDRVKPHGPARFGSLRSRDFRGMNCRSFQSGAGILPTPLKACNSE 60

Query: 61  TEHFYPSSXXXXXXXXXXXXXXXXXXATVPTAPIPIKPKFLNNNSVLHEEFYDPSFSFSE 120
           TEHFYP S                  AT+ +APIPIKPK  N ++  HEEFYD SFSFSE
Sbjct: 61  TEHFYP-SPKTPPPCLTSNSENRKQLATMRSAPIPIKPKSSNQSNAFHEEFYDRSFSFSE 120

Query: 121 LWAGPTYSNSPPPSSLPIPKFSVAKRTTSQEIPRSAPEFDLHHPSAKSAPPSPTRDQNFS 180
           LWAGPTYSNSPPPSSLPIPKFSVAKRTTS E+ RSAPEF++HHPSAKSAPPSPTRDQNFS
Sbjct: 121 LWAGPTYSNSPPPSSLPIPKFSVAKRTTSLELARSAPEFEMHHPSAKSAPPSPTRDQNFS 180

Query: 181 PRFFFHNDDSATKTLRRILHLDVDNE 200
            RFFFH+ DSATKTLRRIL+LDV NE
Sbjct: 181 ARFFFHSADSATKTLRRILNLDVANE 204

[Close]

BLAST of Carg28055-RA vs. TrEMBL
Match: tr|A0A1S4DXL6|A0A1S4DXL6_CUCME (uncharacterized protein LOC107990294 OS=Cucumis melo OX=3656 GN=LOC107990294 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.5e-71
Identity = 148/206 (71.84%), Postives = 160/206 (77.67%), Query Frame = 0


Query: 1   MEAVVVVEQQHRNQYYG-------APFGSFPSRDFRGVNCRSFQSGAGILPTPSKASTSE 60
           MEAVVV+E QHRNQYY        A FGS  SRDF G+NCRSFQSGAGILPTP KA TSE
Sbjct: 1   MEAVVVIE-QHRNQYYDRVKPHGPARFGSLRSRDFGGMNCRSFQSGAGILPTPLKACTSE 60

Query: 61  TEHFYPSSXXXXXXXXXXXXXXXXXXATVPTAPIPIKPKFLNNNSVLHEEFYDPSFSFSE 120
           TEHFYP S                  AT  +API IKPK  N ++V HEEFYD SFSFSE
Sbjct: 61  TEHFYP-SPKTPPPFLTSNSENRKQLATARSAPISIKPKLSNQSNVFHEEFYDRSFSFSE 120

Query: 121 LWAGPTYSNSPPPSSLPIPKFSVAKRTTSQEIPRSAPEFDLHHPSAKSAPPSPTRDQNFS 180
           LWAGPTYSNSPPPSSLPIPKFSVAKRTTS E+ RSAPEF++HHPSAKSAPPSPTRDQ+FS
Sbjct: 121 LWAGPTYSNSPPPSSLPIPKFSVAKRTTSLELARSAPEFEMHHPSAKSAPPSPTRDQDFS 180

Query: 181 PRFFFHNDDSATKTLRRILHLDVDNE 200
            R+FFH+ DSATKTLRRIL+LDVDNE
Sbjct: 181 ARYFFHSADSATKTLRRILNLDVDNE 204

[Close]

BLAST of Carg28055-RA vs. TrEMBL
Match: tr|A0A2I4E5P1|A0A2I4E5P1_9ROSI (uncharacterized protein LOC108986515 OS=Juglans regia OX=51240 GN=LOC108986515 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.4e-42
Identity = 109/215 (50.70%), Postives = 130/215 (60.47%), Query Frame = 0


Query: 1   MEAVVVVEQQHRNQYYG-------APFGSFPSRDFRGVNCRSFQSGAGILPTPSKASTSE 60
           ME ++VV  QHRNQYY           GS P+RDFRG+NCRSFQSG GILPTP +  +S 
Sbjct: 1   METILVV-AQHRNQYYSRSKPDGPVRLGSSPARDFRGINCRSFQSGEGILPTPLRTCSSP 60

Query: 61  TEHFYPSS----XXXXXXXXXXXXXXXXXXATVPTAPIPIKPKFLNNNSVLHEEFYDPSF 120
                 SS                       T  ++PI I  K    N    EE  + SF
Sbjct: 61  VAARACSSSFSLSLAETPSGPQNDISVQFKTTATSSPINIDAKVCKKNRAFSEEVANESF 120

Query: 121 SFSELWAGPTYSNSPPPSSLPIPKFSV-AKRTTSQEIPRSAPEFDLHHPSAKSAPPSPTR 180
           SFSE WAGPTYSNSPPPSSLPIPKFS+  KR+ S ++PRSAPE ++H+P AKSAPPSP+R
Sbjct: 121 SFSERWAGPTYSNSPPPSSLPIPKFSILPKRSVSLDLPRSAPEIEMHYPMAKSAPPSPSR 180

Query: 181 DQNFS----PRFFFHNDDSATKTLRRILHLDVDNE 200
               S     R  F + DSATKTLRRIL+LD+D+E
Sbjct: 181 YYTNSTRDITRDIFRSADSATKTLRRILNLDLDDE 214

[Close]

BLAST of Carg28055-RA vs. TrEMBL
Match: tr|M5VKQ5|M5VKQ5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G238400 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.5e-39
Identity = 104/210 (49.52%), Postives = 129/210 (61.43%), Query Frame = 0


Query: 1   MEAVVVVEQQHRNQYYG-------APFGSFPSRDFRGVNCRSFQSGAGILPTPSK-ASTS 60
           ME ++VV +  +NQYY          +G  PS+DFR +NCR+FQSG GILPTPSK  ST 
Sbjct: 1   METLLVVAEP-KNQYYNRVKPHGPVRYGPSPSKDFRAINCRTFQSGTGILPTPSKNCSTP 60

Query: 61  ETEHFYPSSXXXXXXXXXXXXXXXXXXATVPTAPIPIKPKFLNNNSVLHEEFYDPSFSFS 120
            ++    SS                   +         P  +N  S   E+ ++ SFSFS
Sbjct: 61  VSKRACSSSSKITTPGPNKTPTPSVGSQSDSKTLGKSTPIAINVKSSKKEKPFNGSFSFS 120

Query: 121 ELWAGPTYSNSPPPSSLPIPKFSV-AKRTTSQEIPRSAPEFDLH--HPSAKSAPPSPTRD 180
           ELWAGP YSNSPPPSSLPIPKFS+  KRT S E+P SA + ++H  HP AKSAP SPTR+
Sbjct: 121 ELWAGPAYSNSPPPSSLPIPKFSIRPKRTVSLELPSSASDMEMHPTHPIAKSAPASPTRE 180

Query: 181 QNFSPRFFFHNDDSATKTLRRILHLDVDNE 200
            + S R  FHN DSAT+TLRRIL+LDVD+E
Sbjct: 181 HSSSARDLFHNADSATRTLRRILNLDVDDE 209

[Close]

BLAST of Carg28055-RA vs. TrEMBL
Match: tr|A0A059AYU2|A0A059AYU2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H01463 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.1e-37
Identity = 103/211 (48.82%), Postives = 130/211 (61.61%), Query Frame = 0


Query: 1   MEAVVVVEQQHRNQY--------YGAPFGSFPSRDFRGVNCRSFQSG-AGILPTPSKA-S 60
           ME +VVV Q   +QY          A F S PSR FR ++CR+FQSG AGILPTP KA  
Sbjct: 1   METLVVVAQHRNHQYSRTKANGGLAAGFESSPSRCFREISCRTFQSGAAGILPTPLKARK 60

Query: 61  TSETEHFYPSSXXXXXXXXXXXXXXXXXXATVPTAPIPIKPKFLNNNSVLHEEFYDPSFS 120
           T+E     P++                      + PIPIK K +N+ +  ++EF   S S
Sbjct: 61  TAEIVQAPPAA-----AAAGSVSDETYLKPKAGSTPIPIKAKPVNDENFFYDEFSSGSMS 120

Query: 121 FSELWAGPTYSNSPPPSSLPIPKFSV-AKRTTSQEIPRSA-PEFDLHHPSAKSAPPSPTR 180
           F+ELWAGP YSNSPPPSSLPIPKFS+  KRT S ++P SA  +  +HHP AKSAP SPT 
Sbjct: 121 FAELWAGPAYSNSPPPSSLPIPKFSLRPKRTVSLDLPSSASDDVVMHHPIAKSAPSSPTG 180

Query: 181 DQNFSPRFFFHNDDSATKTLRRILHLDVDNE 200
           D+  S + FFH+ DSAT+TLRRIL+LD  ++
Sbjct: 181 DRKLSSKAFFHSADSATQTLRRILNLDATDD 206

The following BLAST results are available for this feature:

BLAST of Carg28055-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47907.1	6.2e-72	72.33	hypothetical protein Csa_6G410620 [Cucumis sativus]	[more]
XP_016900729.1	2.3e-71	71.84	PREDICTED: uncharacterized protein LOC107990294 [Cucumis melo]	[more]
XP_018814708.1	5.1e-42	50.70	PREDICTED: uncharacterized protein LOC108986515 [Juglans regia]	[more]
PQQ16908.1	3.1e-39	50.00	hypothetical protein Pyn_08903 [Prunus yedoensis var. nudiflora]	[more]
ONH93559.1	5.3e-39	49.52	hypothetical protein PRUPE_8G238400 [Prunus persica]	[more]

BLAST of Carg28055-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02715.1	9.6e-27	41.38	unknown protein	[more]

BLAST of Carg28055-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg28055-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KHP6\|A0A0A0KHP6_CUCSA	4.1e-72	72.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G410620 PE=4 SV=1	[more]
tr\|A0A1S4DXL6\|A0A1S4DXL6_CUCME	1.5e-71	71.84	uncharacterized protein LOC107990294 OS=Cucumis melo OX=3656 GN=LOC107990294 PE=...	[more]
tr\|A0A2I4E5P1\|A0A2I4E5P1_9ROSI	3.4e-42	50.70	uncharacterized protein LOC108986515 OS=Juglans regia OX=51240 GN=LOC108986515 P...	[more]
tr\|M5VKQ5\|M5VKQ5_PRUPE	3.5e-39	49.52	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G238400 PE=4 SV=1	[more]
tr\|A0A059AYU2\|A0A059AYU2_EUCGR	1.1e-37	48.82	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H01463 PE=4 SV...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg28055	Carg28055	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg28055-RA.exon.1	Carg28055-RA.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg28055-RA.CDS.1	Carg28055-RA.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg28055-RA	Carg28055-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF15365	PNRC	coord: 115..134 e-value: 4.4E-8 score: 32.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..176
None	No IPR available	PANTHER	PTHR35306	FAMILY NOT NAMED	coord: 1..198
None	No IPR available	PANTHER	PTHR35306:SF1	SUBFAMILY NOT NAMED	coord: 1..198