Carg27428-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCTCTCGCTCACCCAACCCCCTCTCTCCCTTCTCTTCTCCCATCTCTATCTCCTAAAACCCCTTCTGCTATCAAACTCCCATTCCCTTCAAGATCCTCTCCCTCCCAGTTTCTTGGAGCCCAGATCTCTCATCACATTTCCCTTTCCTCTGTTCCTTCTTCTTCTTCCTTCAGATTTACTGTCTCTTCTAAGGTAACCCATTATCTTTTAATGGGGTTTTTATATTTTTTGAGTGTTTGTTCTTACATTTTGGGTTTGTTTTTTGATGGGTAGGTGAGTAAAGGCCAAGCCCCACCTGCTTTCAATTTGAAAGATCAGGATGGACGGAATGTGAGCTTGTCTAAATTTAAAGGGAAGCCTGTGGTGGTGTATTTCTATCCTGCTGATGAAACTCCTGGTTGCACCAAACAGGTACTATTTCTATGCTTTAAAATGTGATTAGTTTGATGCTGCTATGTCTTGGGAGTCGTTCTTGCTAGTCTATGCATGAGCGGTGATTTGGTTGTTTGGGTCGATAAGCTTAGTCTTGGAGCATGAATGGTCCAACATGGTTGTTGCTAGTCTACTATGCATGAGCAGGGATTTGGTTGTTTGGGTCATAAGCTTAGTTTTGGAGCATGAATTTAGTAAAAGGTTATATTGAAACTACCAGAAGTTGTATAATAGAAGAAAGATTAGATAATATAGACTGAATTGTATATACCAAAAAGTGGGGAGTCTCCAAAAAAACAAGATAATAAGACATAATCGAAGATCAAAAAGTGGGATGTTATGTCTAAAGGTGCCTTGAATGACGGGCTTGTTCAGTCTACATAACCTGTCTCTACCCCACAGCTTGGTTCATTTTTCTAAACTCAAACCGAGACCGGGAGCAACTCCCTAACCTAATGTGGCACCGGGTTCGGGCCGCAGGGAACGGGTGGGGGGTTCTCTTAAGAAAAAGAAGACAAATAGATTCTAATTCATGTTCATGCTAACAGTAGAGCGAATCCAATACCAAGATGATTTCTTTCTCAGGAAGTGCAGCAAGTACTTGAGTCATTTTTGGGTATCATGCCCCACGAGTGAGTTGCCAAGTGCCCCTTGAATGGTCCGGTGTTGCCCAGACTCGTGTTGCTAGTGTATGGCACGTGAGTGGTGATTTGGTTGTTTGGGTCGATAAGCTTAGTCTTGGAGAATGAATTTAGTAAAAAGTTGAATGGTCCAATGTGGTTGTTGCTAGTCTACGACGCATGAGGGGTGATTTGGTTGTTTTGGTTGTTTTGGGTCATAAGCTTAGTCTTTGAGCATGGATTTAGTAAAAAGTTGAATGGTCCAATGTGGTTGTTGCTAGTCTACAGCGTACGAGTGGTGATTTGGTTGTTTGGGTCATAAGCTTAGTCTTGGAGCATGAATTTAGGAAAAAGTTGAATGGTCTAGTGTTGCTGAGGCTCGTTGCTAGTGTATAGCACGTGAGTGGTGATTTGGTTTGGGTCGATAAGCTTAGTCTTTGAGCATGAATATAGTAAAAAGTTGAATGGTCCAATGTGGTTATTGCTAGTCTACGGCACATGAGTGGTGATTTGGTCGTTTGGGTCATAAGCTTAGTCTTTGAGCATGAATTTCGTAAAAAGTTGAGTGGTCCAATGTTGCTGAGGCTCGTTGCTAGTGTATAGCACGTGAGTGGTGATTTGGTTGTTTGGGTCATAAACTTAGTCTTGGAACATGAATTTAGTAAAAAGTTGAATGGTCTAATGTTGTTGAGGCTCGATGCTAATGTGTAGCACGTGAGTAGTGATTTGGTTGTTTGGGTCGAGAAGCTTAGTCTTGGAGCATGAATATAGTAAAAAGTTGAATGGTCCAGTGTTGCTGAGGCTCGTTGCTACTGTATAGCACGTGAGTGTGATTTGGTTGTTTGGGTCATAATTGAGTTTAGCAAAAGAATATTGAACGACAAATTAGTTTGATGTCTTTTGAAAGTACTTTCTTACCAATTTTTTGGACTAAAAACATTTAAGACACGTTTGGATTGACTTTTTAAGGATAAGGTCAGTAAAAAAACATTAAGGACATGTTTAGATCGACTTCGAAGTGCTTAAAAAGTACTTAAAAGTCGATTCAAAGCAATCTGAAGGCTTGTCTCGGCAACGTTTTTTACTTTTGAGCTTTGAAAGCACGTGTCAAGTTAGAAATCACTGAAACTGAGTTTGGATCTAGGATGGGAAATTGACATTTTTAACGATTGTTTCGGTAAAAAAAACATTAAGGATATATTTAGACCGACTTCTAAGTGCTTAAAAAGTACTTAAAACTCGATTCAAACCGGTCTAAAGTGTTGTCTCGGCAATGTTTTTTTTTTTTACTTTTGAGCTTTGAAAGCACGTGTCGAGTTAAAAATCACTTGCGTTTTTTTACTTTTGAGCTTTGAAAGCATGTGCCAAATTAGAAATCACTTACATTTCTTACTTTTGAGCTTTGAAAGCTCGTGTCAAGTTAGAAATCATTTGCGTTTTTTACTTTTGAGCTCTGAAAGTACGTGTCAAGTACTTTTGAGCTTTGAAAGCACGTGTCAAGTTAACTAAAACTCGAATTTGAATCGAGCAAATAGGACGAAAAATTAACATTCGTGCAGGCGTGTGCTTTCAGAGATTCTTATGAGAAGTTCAAGAAAGCAGGAGCTCAGGTTGTAGGCAAAGTGTGGCCAAATTCATCATCACACAACATTTCTTACTTTTGAGCATTGAAAGCTTGTCAATTTAGAAATCATTTGCTATGATTTTATTCTGAAACGTGTAAGTTTGATCCAACGGCTATGATTTATTTGAAAACATTGATGGTGTTGTAGGCTTGTGTCAAAGAAATCATAGACTTCCATTACTTGCTGAGCTAAGTAACGAAGTGTGTCAAGTTAGAAATCACTTGCGTTTTTTACTTTTGAGCTGTGAAAGCACGTGTCAAGTTAGAAATCACTTACATTTTTTACTTTTGAGCTTTGAAAGCACGTGTCAAGTTAGAAATCACTTGCGTTCCAACTTTTGAAGCATTAAAGCAGACGTGTCAAGTTACGAAGAAGAATCACTTAATTTTCTCTACTTTATAGCTTTGGAAAGCTCGTGTTCAAGTTAGAGAGGCACTTACATTATTTGACTTTTGAATCTTTGAAAGCTCGAAGAAAGTTAGATCACTTGCGTTTTGGTTGACTTTTGAGCTTTGATCAGTACGTGTCAATGTCTTTTGAGCTTGAGTATAAGCACGTATCAAATTAACTAAAACTCGAGTTTGAATCGAGCAAATAGGACGGTTCTTTAACATTTCGTGCAGAGCAAAACACAAGAGATTCTTATGAGAAGTTCAAGAAAGCAGGAGCTCAGGTTGTAGGCATAAGTGGCGATGATTCATCATCACACAAGGTAATTCATCATCCAAAATTTGTATTTGATCCAACGGCTATGATTTATTTGAAACGTTTATGGGAATTGTAGGCTTTTGCAAAGAAATATAGACTTCCATTCACATTGCTAAGTGATGAAGGTAACAAAGTGAGAAAAGAATGGGGAGTTCCTTCTGATCTCTTTGGTGCATTACCTGGTCGACAGACTTATGTTCTCGACAAGAACGGCATCGTGCAGCTCGTTTATAATAACCAGTTCCAACCCGAGAAGCATATCGACGAGACGCTCAAATTACTTCAAACCCTTTAA ATGGCTTCTCTCGCTCACCCAACCCCCTCTCTCCCTTCTCTTCTCCCATCTCTATCTCCTAAAACCCCTTCTGCTATCAAACTCCCATTCCCTTCAAGATCCTCTCCCTCCCAGTTTCTTGGAGCCCAGATCTCTCATCACATTTCCCTTTCCTCTGTTCCTTCTTCTTCTTCCTTCAGATTTACTGTCTCTTCTAAGGTGAGTAAAGGCCAAGCCCCACCTGCTTTCAATTTGAAAGATCAGGATGGACGGAATGTGAGCTTGTCTAAATTTAAAGGGAAGCCTGTGGTGGTGTATTTCTATCCTGCTGATGAAACTCCTGGTTGCACCAAACAGGCGTGTGCTTTCAGAGATTCTTATGAGAAGTTCAAGAAAGCAGGAGCTCAGGACGGTTCTTTAACATTTCGTGCAGAGCAAAACACAAGAGATTCTTATGAGAAGTTCAAGAAAGCAGGAGCTCAGGTTGTAGGCATAAGTGGCGATGATTCATCATCACACAAGGCTTTTGCAAAGAAATATAGACTTCCATTCACATTGCTAAGTGATGAAGGTAACAAAGTGAGAAAAGAATGGGGAGTTCCTTCTGATCTCTTTGGTGCATTACCTGGTCGACAGACTTATGTTCTCGACAAGAACGGCATCGTGCAGCTCGTTTATAATAACCAGTTCCAACCCGAGAAGCATATCGACGAGACGCTCAAATTACTTCAAACCCTTTAA ATGGCTTCTCTCGCTCACCCAACCCCCTCTCTCCCTTCTCTTCTCCCATCTCTATCTCCTAAAACCCCTTCTGCTATCAAACTCCCATTCCCTTCAAGATCCTCTCCCTCCCAGTTTCTTGGAGCCCAGATCTCTCATCACATTTCCCTTTCCTCTGTTCCTTCTTCTTCTTCCTTCAGATTTACTGTCTCTTCTAAGGTGAGTAAAGGCCAAGCCCCACCTGCTTTCAATTTGAAAGATCAGGATGGACGGAATGTGAGCTTGTCTAAATTTAAAGGGAAGCCTGTGGTGGTGTATTTCTATCCTGCTGATGAAACTCCTGGTTGCACCAAACAGGCGTGTGCTTTCAGAGATTCTTATGAGAAGTTCAAGAAAGCAGGAGCTCAGGACGGTTCTTTAACATTTCGTGCAGAGCAAAACACAAGAGATTCTTATGAGAAGTTCAAGAAAGCAGGAGCTCAGGTTGTAGGCATAAGTGGCGATGATTCATCATCACACAAGGCTTTTGCAAAGAAATATAGACTTCCATTCACATTGCTAAGTGATGAAGGTAACAAAGTGAGAAAAGAATGGGGAGTTCCTTCTGATCTCTTTGGTGCATTACCTGGTCGACAGACTTATGTTCTCGACAAGAACGGCATCGTGCAGCTCGTTTATAATAACCAGTTCCAACCCGAGAAGCATATCGACGAGACGCTCAAATTACTTCAAACCCTTTAA MASLAHPTPSLPSLLPSLSPKTPSAIKLPFPSRSSPSQFLGAQISHHISLSSVPSSSSFRFTVSSKVSKGQAPPAFNLKDQDGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAQDGSLTFRAEQNTRDSYEKFKKAGAQVVGISGDDSSSHKAFAKKYRLPFTLLSDEGNKVRKEWGVPSDLFGALPGRQTYVLDKNGIVQLVYNNQFQPEKHIDETLKLLQTL
BLAST of Carg27428-RA vs. NCBI nr
Match: XP_023513647.1 (peroxiredoxin Q, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 403.3 bits (1035), Expect = 5.8e-109 Identity = 210/239 (87.87%), Postives = 211/239 (88.28%), Query Frame = 0
BLAST of Carg27428-RA vs. NCBI nr
Match: XP_022932804.1 (peroxiredoxin Q, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 402.1 bits (1032), Expect = 1.3e-108 Identity = 209/239 (87.45%), Postives = 211/239 (88.28%), Query Frame = 0
BLAST of Carg27428-RA vs. NCBI nr
Match: XP_022974039.1 (peroxiredoxin Q, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 394.4 bits (1012), Expect = 2.7e-106 Identity = 207/239 (86.61%), Postives = 210/239 (87.87%), Query Frame = 0
BLAST of Carg27428-RA vs. NCBI nr
Match: XP_004138385.1 (PREDICTED: peroxiredoxin Q, chloroplastic [Cucumis sativus] >KGN45857.1 hypothetical protein Csa_6G014770 [Cucumis sativus]) HSP 1 Score: 350.1 bits (897), Expect = 5.8e-93 Identity = 184/240 (76.67%), Postives = 197/240 (82.08%), Query Frame = 0
BLAST of Carg27428-RA vs. NCBI nr
Match: XP_022973449.1 (peroxiredoxin Q, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 348.2 bits (892), Expect = 2.2e-92 Identity = 183/239 (76.57%), Postives = 195/239 (81.59%), Query Frame = 0
BLAST of Carg27428-RA vs. TAIR10
Match: AT3G26060.2 (Thioredoxin superfamily protein) HSP 1 Score: 229.2 bits (583), Expect = 2.7e-60 Identity = 127/232 (54.74%), Postives = 147/232 (63.36%), Query Frame = 0
BLAST of Carg27428-RA vs. TAIR10
Match: AT5G06290.1 (2-cysteine peroxiredoxin B) HSP 1 Score: 65.9 bits (159), Expect = 4.0e-11 Identity = 63/224 (28.12%), Postives = 98/224 (43.75%), Query Frame = 0
BLAST of Carg27428-RA vs. TAIR10
Match: AT3G11630.1 (Thioredoxin superfamily protein) HSP 1 Score: 55.8 bits (133), Expect = 4.1e-08 Identity = 71/259 (27.41%), Postives = 108/259 (41.70%), Query Frame = 0
BLAST of Carg27428-RA vs. Swiss-Prot
Match: sp|Q6QPJ6|PRXQ_POPJC (Peroxiredoxin Q, chloroplastic OS=Populus jackii OX=640484 GN=PRXQ PE=1 SV=1) HSP 1 Score: 320.5 bits (820), Expect = 1.6e-86 Identity = 167/239 (69.87%), Postives = 187/239 (78.24%), Query Frame = 0
BLAST of Carg27428-RA vs. Swiss-Prot
Match: sp|Q6UBI3|PERQ_SUASA (Peroxiredoxin Q, chloroplastic OS=Suaeda salsa OX=126914 GN=PRXQ PE=2 SV=1) HSP 1 Score: 295.0 bits (754), Expect = 7.3e-79 Identity = 155/239 (64.85%), Postives = 179/239 (74.90%), Query Frame = 0
BLAST of Carg27428-RA vs. Swiss-Prot
Match: sp|Q9MB35|PERQ_SEDLI (Peroxiredoxin Q, chloroplastic (Fragment) OS=Sedum lineare OX=114260 GN=PRXQ PE=1 SV=1) HSP 1 Score: 278.9 bits (712), Expect = 5.4e-74 Identity = 144/206 (69.90%), Postives = 157/206 (76.21%), Query Frame = 0
BLAST of Carg27428-RA vs. Swiss-Prot
Match: sp|Q75SY5|PRXQ_GENTR (Peroxiredoxin Q, chloroplastic OS=Gentiana triflora OX=55190 GN=AFP1 PE=2 SV=1) HSP 1 Score: 274.6 bits (701), Expect = 1.0e-72 Identity = 153/242 (63.22%), Postives = 172/242 (71.07%), Query Frame = 0
BLAST of Carg27428-RA vs. Swiss-Prot
Match: sp|P0C5D4|PRXQ_ORYSI (Putative peroxiredoxin Q, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_22010 PE=3 SV=1) HSP 1 Score: 260.0 bits (663), Expect = 2.6e-68 Identity = 144/243 (59.26%), Postives = 166/243 (68.31%), Query Frame = 0
BLAST of Carg27428-RA vs. TrEMBL
Match: tr|A0A0A0KBU9|A0A0A0KBU9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014770 PE=4 SV=1) HSP 1 Score: 350.1 bits (897), Expect = 3.9e-93 Identity = 184/240 (76.67%), Postives = 197/240 (82.08%), Query Frame = 0
BLAST of Carg27428-RA vs. TrEMBL
Match: tr|A0A1S3CK00|A0A1S3CK00_CUCME (peroxiredoxin Q, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501326 PE=4 SV=1) HSP 1 Score: 347.8 bits (891), Expect = 1.9e-92 Identity = 183/240 (76.25%), Postives = 195/240 (81.25%), Query Frame = 0
BLAST of Carg27428-RA vs. TrEMBL
Match: tr|A9PJX8|A9PJX8_9ROSI (Uncharacterized protein OS=Populus trichocarpa x Populus deltoides OX=3695 PE=2 SV=1) HSP 1 Score: 320.5 bits (820), Expect = 3.3e-84 Identity = 167/239 (69.87%), Postives = 187/239 (78.24%), Query Frame = 0
BLAST of Carg27428-RA vs. TrEMBL
Match: tr|B9HAD0|B9HAD0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G137500v3 PE=4 SV=2) HSP 1 Score: 319.3 bits (817), Expect = 7.3e-84 Identity = 166/239 (69.46%), Postives = 187/239 (78.24%), Query Frame = 0
BLAST of Carg27428-RA vs. TrEMBL
Match: tr|A0A061GKZ9|A0A061GKZ9_THECC (Thioredoxin superfamily protein, Q OS=Theobroma cacao OX=3641 GN=TCM_037475 PE=4 SV=1) HSP 1 Score: 317.4 bits (812), Expect = 2.8e-83 Identity = 167/239 (69.87%), Postives = 187/239 (78.24%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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