Carg26896-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26896-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_247 : 185020 .. 185681 (+)
Sequence length	445

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTTTGGGGCAGCAGCCATTGCAAGGAGATCACCCACTTCCAACACTTCCCTCCTTTTCGCTTCCAACCCCAAATTTATTCACGTAAGTACGTCGTCCTTCCACCAAATTTGTTCCTTAAAGAAGTCAGAGATTCGAATCTCATATTTCAGATGATGATGTGATGTTTTTGTGCGTCTTTTGACAGACAAATCCACCACAAGATGGGTCAGAAGCCAAAGATGCCATAAACCCGGAGGCAAATGAAGGAATGACGCCTGGTGAACATATGATGCAGGACAAGGCTTACTCTACTGCAGAACATGTGATCAAACTTCCAACTTTTTATTTTATTTTATTTTATTTTTTAAATTAATTGAATCGAAGCTACGAACGAGAGCGATGTTGAAGATAGATAAGATGGGGTAAATTTGGAAATGCAGGTGAGTGAGAAGACAAGGGATATGGCAGGGATGCTGAGTGCAAGAGCGCAAGAGGTATCAGCAAAGGCAAAGCAGGCAATGGAAGCAGCAAAGGACTCAGCCCATAGGGCAAAGGACACAGTGGTTGAGACTACCAGAGACTCCAAGCAATTTGTCAAAGCCAATGCAAAGACTGTTGAGAAGTGCATGAACACCAAGAACCGTTCTTAATTTCCCCTTCTTTCTTTCTTTTTTTTTTTT

mRNA sequence

CATTTTGGGGCAGCAGCCATTGCAAGGAGATCACCCACTTCCAACACTTCCCTCCTTTTCGCTTCCAACCCCAAATTTATTCACGTAAACAAATCCACCACAAGATGGGTCAGAAGCCAAAGATGCCATAAACCCGGAGGCAAATGAAGGAATGACGCCTGGTGAACATATGATGCAGGACAAGGCTTACTCTACTGCAGAACATGTGAGTGAGAAGACAAGGGATATGGCAGGGATGCTGAGTGCAAGAGCGCAAGAGGTATCAGCAAAGGCAAAGCAGGCAATGGAAGCAGCAAAGGACTCAGCCCATAGGGCAAAGGACACAGTGGTTGAGACTACCAGAGACTCCAAGCAATTTGTCAAAGCCAATGCAAAGACTGTTGAGAAGTGCATGAACACCAAGAACCGTTCTTAATTTCCCCTTCTTTCTTTCTTTTTTTTTTTT

Coding sequence (CDS)

ATGACGCCTGGTGAACATATGATGCAGGACAAGGCTTACTCTACTGCAGAACATGTGAGTGAGAAGACAAGGGATATGGCAGGGATGCTGAGTGCAAGAGCGCAAGAGGTATCAGCAAAGGCAAAGCAGGCAATGGAAGCAGCAAAGGACTCAGCCCATAGGGCAAAGGACACAGTGGTTGAGACTACCAGAGACTCCAAGCAATTTGTCAAAGCCAATGCAAAGACTGTTGAGAAGTGCATGAACACCAAGAACCGTTCTTAA

Protein sequence

MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKDTVVETTRDSKQFVKANAKTVEKCMNTKNRS

Homology

[Close]

BLAST of Carg26896-RA vs. NCBI nr
Match: XP_022933143.1 (uncharacterized protein At4g13230 [Cucurbita moschata])

HSP 1 Score: 110.5 bits (275), Expect = 2.8e-21
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1   MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQXXXXXXXXXXXXXXXXXXXXXXXXV 60
           MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARA XXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 64  MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAXXXXXXXXXXXXXXXXXXXXXXXXXX 123

Query: 61  ETTRDSKQFVKANAKTVEKCMNTKNRS 88
           ETT+DSKQFVKANAKTVEKCMNTKNRS
Sbjct: 124 ETTKDSKQFVKANAKTVEKCMNTKNRS 150

[Close]

BLAST of Carg26896-RA vs. NCBI nr
Match: XP_023546410.1 (uncharacterized protein At4g13230 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.5 bits (275), Expect = 2.8e-21
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1   MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQXXXXXXXXXXXXXXXXXXXXXXXXV 60
           MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARA XXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 64  MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAXXXXXXXXXXXXXXXXXXXXXXXXXX 123

Query: 61  ETTRDSKQFVKANAKTVEKCMNTKNRS 88
           ETT+DSKQFVKANAKTVEKCMNTKNRS
Sbjct: 124 ETTKDSKQFVKANAKTVEKCMNTKNRS 150

[Close]

BLAST of Carg26896-RA vs. NCBI nr
Match: XP_022973925.1 (uncharacterized protein At4g13230 [Cucurbita maxima])

HSP 1 Score: 99.8 bits (247), Expect = 5.0e-18
Identity = 80/87 (91.95%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1   MTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQXXXXXXXXXXXXXXXXXXXXXXXXV 60
           MT GE MMQDKAYSTAEHVSEKTRDMAGMLSARA XXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 64  MTSGEQMMQDKAYSTAEHVSEKTRDMAGMLSARAXXXXXXXXXXXXXXXXXXXXXXXXXX 123

Query: 61  ETTRDSKQFVKANAKTVEKCMNTKNRS 88
             T+DSKQFVKANAKTVEKCMNTKNRS
Sbjct: 124 XXTKDSKQFVKANAKTVEKCMNTKNRS 150

The following BLAST results are available for this feature:

BLAST of Carg26896-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933143.1	2.8e-21	96.55	uncharacterized protein At4g13230 [Cucurbita moschata]	[more]
XP_023546410.1	2.8e-21	96.55	uncharacterized protein At4g13230 [Cucurbita pepo subsp. pepo]	[more]
XP_022973925.1	5.0e-18	91.95	uncharacterized protein At4g13230 [Cucurbita maxima]	[more]

BLAST of Carg26896-RA vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg26896-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg26896-RA vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg26896	Carg26896	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg26896-RA	Carg26896-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26896-RA.exon.1	Carg26896-RA.exon.1	exon
Carg26896-RA.exon.2	Carg26896-RA.exon.2	exon
Carg26896-RA.exon.3	Carg26896-RA.exon.3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26896-RA.five_prime_UTR.1	Carg26896-RA.five_prime_UTR.1	five_prime_UTR
Carg26896-RA.five_prime_UTR.2	Carg26896-RA.five_prime_UTR.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26896-RA.CDS.1	Carg26896-RA.CDS.1	CDS
Carg26896-RA.CDS.2	Carg26896-RA.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26896-RA.three_prime_UTR.1	Carg26896-RA.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	PANTHER	PTHR23241	LATE EMBRYOGENESIS ABUNDANT PLANTS LEA-RELATED	coord: 8..85
None	No IPR available	PANTHER	PTHR23241:SF96	SUBFAMILY NOT NAMED	coord: 8..85