Carg26850-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTGTTCATTGTTTCGTAGGTTTCAAGAATCTTGTGAATATTCTATTCTGTTCTGTGAATTTGATTCGTTTTTTTTGGTTTTGTTTCGTGGGTCGAAGAAACAGAACAATTTAGGGCGAAGTCGACTTTAGAAAACCCCGCTCCATTATCTTTTGTTGATTCTTCTATGTCGATATATTCTATTCAGGGTCAACCTCTGGAAGTCATCGGTATGTCTGTTTAGTTCTGTTTTTGAAAATTGTGTATGATTATTGATCAATCTTTCCCTCCAAAATGAAATATGAAATTGATTTCGTTTGTTTATGTTATTTTGGGTCAGTTATTGGATGCACAAAGTTGAAAGATACGGAATGGATTTCAAGGCAGGATCCATATGTGTGCCTTGAATATGGTAGCACCAATTTCCGCACGACCACTTGTAGAGGTTATGTTTTGGATTTTCCTTGTTGGTTGTGTTTAATTTGGTTAGATCTAATGAGATGAACATGAACTGAATGTGAATTTGATTGGCATTGTATGTATAGATGGTGGCAGAAATCCTATATTCCAAGAGAAATTTGTGTTCTCTCTAATTGAAGGGATTAGAGAGATTAATGTTACTGTTTGGAATAGCAATACAGTTACTTATGATGACTTCATTGGCAATGGAAAGTAAGATTTATGTTCTTTCTTCCTTTTTGTTTGAACTTGTGTTCATGTTTTTCATTTGGGTATTGAGTTTTGAATGTTCTGTTTTGTAGAATTCAATTGGCTAAGGTTCTAGCAGAAGGTTATGATGATAGCACATGGTCACTTCAAACAAAAACTGGCAGGTATGATATGGCTTTGAATTTGTTTGATATAATTTTGCCTGAAGCTTTTACTTGCTAGCGAATTACTTTTCTTTCAGGGATTTTCCATGTTTTCAAGGTTAGGATGTTAAAATAGCTATTGAGTTTGGTTTAGCCATCACCCCTTCTTGTGACCTGCCTTCCTATCTTACAGAGAAATTTCTCCGATATTAGCTGACTCAATAAATGTGAGATCCCACGTTAGTTAGAGAGGGAAACGAGTTCCAGCGAGGACGCTGGGCCTTGAAGGGGGTGGGTTGGGAGATCCCACTTTGGTTGGAGAGGGGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGATGCGTTTTAAAAACTTTGAGAGGAAGGTCGAAAGGGAAAGTTTAGAGAGGACAATATCTGCTAGTGGTGAGCTTGGATTGTTACAAATGATATCAGAGCCAGACATTGGGCGATGTGCTAGCGAGGAGGTTGTGCCCCGAAGGGGGGTGGACACAAGGAGGTGTGCCAACAAGGATGTTGGGCCCCAAAGGGGGTGGATTGAGGGGTCCTATATCGATTGGAGAAGGGAATGAGTACTAGCGAGAACGCTGACCTTGAAAGAGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGAACCAAGGGTTTTTTATAAGGGTGTGGAGACCTCTCCCTAATAGACACGTTTTAAAAACCTTGAGGGGAAGTTCGAAAGAAAAAGCCCAAAGAGGACAATATCGGGGTTGTGTGCTGTTACAAATGGTATCAGAGCTAGACACCGGGTGATGTGTCAGTGAGGAGGCTGAGCCTTGAAGGGGGTGGACACGAGGCAGTGTGCCAATAGGACATTGGGCCCCAAAGGGGAGTGGATTGGGAATCCCCAACGGTTTTGATTTCTTTTCATTTTTGTTTGTTTTGAATGAAAATTGACTTTCTTTATCAACTTGAAGAGTTGGCCTACACAGCACAGTGCTGACTTCTTTTCGAGATTCACATTGCATTTCTTCTATGTGCTTTTCGAACGCAATTTGAACTAAAAGCGTTCGTCGTTATTTACGATTTGTCTGGATCATTTGTTCGTTTTCGTTATTATTCTTTTGATATCTCACCGAGCAGAACGAAAAACGTCATTTCCCATGAGTCCATAATAAAAAGCTTTAACATTCACTTTTACCTTATTGTAGACATGCTGGGGAAGTACGATTGATTCTTCATTTTGCAACAGCCGATGTAAGTGATATTTGTATTATGCCTTTAGTTACTGGTAAAAAACAATCCATTCCTGATAGTATAAGATTCCGACCTATCTGTTTTGGTTGTAGAGACTACCAGCAAATTTTGCACCGTCGGCACCGCCCTTTCACGCGCCTCCGCCATCCCAACTTGCCATGTACGCCACGATGCCATCGGCACACCCTACAGCCTACCCTCATCCTCATACACCCTATGCATTTTCATCTCCCTTTCCTTCTTACCCACCCAACAATGGAGCGTATCAAACATCCATGTATGCCTCCCCGTTTCTATCGGGGTATCCTCCATCGTCATACCCGCCGCCTTCCTCGGCTTATCCTCACGCTCCATACCCACCACATCCACAAGCCTCACCATTCTATCCTCCAGGTACGTTTACGTTTTAAATGCTCTGTTAAATGGAATCATAATGCAACTAAAACTTGCTTCTGTGTGCGTGTGTGTGCGTCGTTGTCGTCTCAGGCCCTTATCCTGGAGTTTATCCCCCACCACAGTATTGAAATCTCAAGGTTGGGTCTCAATGATCTCTCCATAAGTTGTATAGAAACTTCTGCTAATATATTTATATATATTTG TTGTTCATTGTTTCGTAGGTTTCAAGAATCTTGTGAATATTCTATTCTGTTCTGTGAATTTGATTCGTTTTTTTTGGTTTTGTTTCGTGGGTCGAAGAAACAGAACAATTTAGGGCGAAGTCGACTTTAGAAAACCCCGCTCCATTATCTTTTGTTGATTCTTCTATGTCGATATATTCTATTCAGGGTCAACCTCTGGAAGTCATCGTTATTGGATGCACAAAGTTGAAAGATACGGAATGGATTTCAAGGCAGGATCCATATGTGTGCCTTGAATATGGTAGCACCAATTTCCGCACGACCACTTGTAGAGATGGTGGCAGAAATCCTATATTCCAAGAGAAATTTGTGTTCTCTCTAATTGAAGGGATTAGAGAGATTAATGTTACTGTTTGGAATAGCAATACAGTTACTTATGATGACTTCATTGGCAATGGAAAAATTCAATTGGCTAAGGTTCTAGCAGAAGGTTATGATGATAGCACATGGTCACTTCAAACAAAAACTGGCAGACATGCTGGGGAAGTACGATTGATTCTTCATTTTGCAACAGCCGATAGACTACCAGCAAATTTTGCACCGTCGGCACCGCCCTTTCACGCGCCTCCGCCATCCCAACTTGCCATGTACGCCACGATGCCATCGGCACACCCTACAGCCTACCCTCATCCTCATACACCCTATGCATTTTCATCTCCCTTTCCTTCTTACCCACCCAACAATGGAGCGTATCAAACATCCATGTATGCCTCCCCGTTTCTATCGGGGTATCCTCCATCGTCATACCCGCCGCCTTCCTCGGCTTATCCTCACGCTCCATACCCACCACATCCACAAGCCTCACCATTCTATCCTCCAGGCCCTTATCCTGGAGTTTATCCCCCACCACAGTATTGAAATCTCAAGGTTGGGTCTCAATGATCTCTCCATAAGTTGTATAGAAACTTCTGCTAATATATTTATATATATTTG ATGTCGATATATTCTATTCAGGGTCAACCTCTGGAAGTCATCGTTATTGGATGCACAAAGTTGAAAGATACGGAATGGATTTCAAGGCAGGATCCATATGTGTGCCTTGAATATGGTAGCACCAATTTCCGCACGACCACTTGTAGAGATGGTGGCAGAAATCCTATATTCCAAGAGAAATTTGTGTTCTCTCTAATTGAAGGGATTAGAGAGATTAATGTTACTGTTTGGAATAGCAATACAGTTACTTATGATGACTTCATTGGCAATGGAAAAATTCAATTGGCTAAGGTTCTAGCAGAAGGTTATGATGATAGCACATGGTCACTTCAAACAAAAACTGGCAGACATGCTGGGGAAGTACGATTGATTCTTCATTTTGCAACAGCCGATAGACTACCAGCAAATTTTGCACCGTCGGCACCGCCCTTTCACGCGCCTCCGCCATCCCAACTTGCCATGTACGCCACGATGCCATCGGCACACCCTACAGCCTACCCTCATCCTCATACACCCTATGCATTTTCATCTCCCTTTCCTTCTTACCCACCCAACAATGGAGCGTATCAAACATCCATGTATGCCTCCCCGTTTCTATCGGGGTATCCTCCATCGTCATACCCGCCGCCTTCCTCGGCTTATCCTCACGCTCCATACCCACCACATCCACAAGCCTCACCATTCTATCCTCCAGGCCCTTATCCTGGAGTTTATCCCCCACCACAGTATTGA MSIYSIQGQPLEVIVIGCTKLKDTEWISRQDPYVCLEYGSTNFRTTTCRDGGRNPIFQEKFVFSLIEGIREINVTVWNSNTVTYDDFIGNGKIQLAKVLAEGYDDSTWSLQTKTGRHAGEVRLILHFATADRLPANFAPSAPPFHAPPPSQLAMYATMPSAHPTAYPHPHTPYAFSSPFPSYPPNNGAYQTSMYASPFLSGYPPSSYPPPSSAYPHAPYPPHPQASPFYPPGPYPGVYPPPQY
BLAST of Carg26850-RA vs. NCBI nr
Match: XP_022927815.1 (elicitor-responsive protein 3-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 426.0 bits (1094), Expect = 8.5e-116 Identity = 236/243 (97.12%), Postives = 236/243 (97.12%), Query Frame = 0
BLAST of Carg26850-RA vs. NCBI nr
Match: XP_023531347.1 (elicitor-responsive protein 3-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 417.9 bits (1073), Expect = 2.3e-113 Identity = 201/205 (98.05%), Postives = 201/205 (98.05%), Query Frame = 0
BLAST of Carg26850-RA vs. NCBI nr
Match: XP_022988903.1 (elicitor-responsive protein 3-like isoform X2 [Cucurbita maxima] >XP_022988904.1 elicitor-responsive protein 3-like isoform X2 [Cucurbita maxima] >XP_022988905.1 elicitor-responsive protein 3-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 391.3 bits (1004), Expect = 2.3e-105 Identity = 189/193 (97.93%), Postives = 189/193 (97.93%), Query Frame = 0
BLAST of Carg26850-RA vs. NCBI nr
Match: XP_011658892.1 (PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus] >KGN43902.1 hypothetical protein Csa_7G073380 [Cucumis sativus]) HSP 1 Score: 294.7 bits (753), Expect = 3.0e-76 Identity = 185/248 (74.60%), Postives = 199/248 (80.24%), Query Frame = 0
BLAST of Carg26850-RA vs. NCBI nr
Match: XP_008454977.1 (PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis melo] >XP_008454978.1 PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis melo] >XP_016901753.1 PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis melo]) HSP 1 Score: 282.3 bits (721), Expect = 1.5e-72 Identity = 145/211 (68.72%), Postives = 157/211 (74.41%), Query Frame = 0
BLAST of Carg26850-RA vs. TAIR10
Match: AT4G34150.1 (Calcium-dependent lipid-binding (CaLB domain) family protein) HSP 1 Score: 199.9 bits (507), Expect = 1.8e-51 Identity = 91/137 (66.42%), Postives = 110/137 (80.29%), Query Frame = 0
BLAST of Carg26850-RA vs. TAIR10
Match: AT1G63220.1 (Calcium-dependent lipid-binding (CaLB domain) family protein) HSP 1 Score: 68.2 bits (165), Expect = 8.1e-12 Identity = 33/121 (27.27%), Postives = 60/121 (49.59%), Query Frame = 0
BLAST of Carg26850-RA vs. TAIR10
Match: AT3G55470.1 (Calcium-dependent lipid-binding (CaLB domain) family protein) HSP 1 Score: 55.5 bits (132), Expect = 5.5e-08 Identity = 33/106 (31.13%), Postives = 55/106 (51.89%), Query Frame = 0
BLAST of Carg26850-RA vs. TAIR10
Match: AT3G07940.1 (Calcium-dependent ARF-type GTPase activating protein family) HSP 1 Score: 48.5 bits (114), Expect = 6.7e-06 Identity = 23/83 (27.71%), Postives = 46/83 (55.42%), Query Frame = 0
BLAST of Carg26850-RA vs. Swiss-Prot
Match: sp|Q25AG5|ERG3_ORYSI (Elicitor-responsive protein 3 OS=Oryza sativa subsp. indica OX=39946 GN=ERG3 PE=2 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 6.0e-12 Identity = 37/126 (29.37%), Postives = 66/126 (52.38%), Query Frame = 0
BLAST of Carg26850-RA vs. Swiss-Prot
Match: sp|Q0JBH9|ERG3_ORYSJ (Elicitor-responsive protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=ERG3 PE=1 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 6.0e-12 Identity = 37/126 (29.37%), Postives = 66/126 (52.38%), Query Frame = 0
BLAST of Carg26850-RA vs. Swiss-Prot
Match: sp|Q9C8S6|Y1322_ARATH (C2 domain-containing protein At1g63220 OS=Arabidopsis thaliana OX=3702 GN=At1g63220 PE=1 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.5e-10 Identity = 33/121 (27.27%), Postives = 60/121 (49.59%), Query Frame = 0
BLAST of Carg26850-RA vs. Swiss-Prot
Match: sp|A2WWV5|ERG1_ORYSI (Elicitor-responsive protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=ERG1 PE=2 SV=2) HSP 1 Score: 62.8 bits (151), Expect = 6.2e-09 Identity = 35/134 (26.12%), Postives = 66/134 (49.25%), Query Frame = 0
BLAST of Carg26850-RA vs. Swiss-Prot
Match: sp|Q0JHU5|ERG1_ORYSJ (Elicitor-responsive protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ERG1 PE=1 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 6.2e-09 Identity = 35/134 (26.12%), Postives = 66/134 (49.25%), Query Frame = 0
BLAST of Carg26850-RA vs. TrEMBL
Match: tr|A0A0A0K6H5|A0A0A0K6H5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G073380 PE=4 SV=1) HSP 1 Score: 294.7 bits (753), Expect = 2.0e-76 Identity = 185/248 (74.60%), Postives = 199/248 (80.24%), Query Frame = 0
BLAST of Carg26850-RA vs. TrEMBL
Match: tr|A0A1S4E0J9|A0A1S4E0J9_CUCME (leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103495260 PE=4 SV=1) HSP 1 Score: 282.3 bits (721), Expect = 1.0e-72 Identity = 145/211 (68.72%), Postives = 157/211 (74.41%), Query Frame = 0
BLAST of Carg26850-RA vs. TrEMBL
Match: tr|A0A200PV28|A0A200PV28_9MAGN (C2 calcium-dependent membrane targeting OS=Macleaya cordata OX=56857 GN=BVC80_8963g41 PE=4 SV=1) HSP 1 Score: 255.0 bits (650), Expect = 1.7e-64 Identity = 120/183 (65.57%), Postives = 145/183 (79.23%), Query Frame = 0
BLAST of Carg26850-RA vs. TrEMBL
Match: tr|D7UC14|D7UC14_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_03s0180g00030 PE=4 SV=1) HSP 1 Score: 254.6 bits (649), Expect = 2.2e-64 Identity = 123/186 (66.13%), Postives = 140/186 (75.27%), Query Frame = 0
BLAST of Carg26850-RA vs. TrEMBL
Match: tr|A0A068TPE6|A0A068TPE6_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00014476001 PE=4 SV=1) HSP 1 Score: 246.5 bits (628), Expect = 6.1e-62 Identity = 111/147 (75.51%), Postives = 129/147 (87.76%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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