Carg26763-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGTGTAGAACTTTAGATATCAACATCAAGAGGGCCTACGGCCTCAAGAACGTCAATCTCTTCTCCACCATGGATGTATACGCCGTCGTTTCGATCTCCGGTGATCCCCGCGGGAAGTCGAAGCAGAGGACTCCGGTGGCTAGAGATAGTGGCTCAGATCCTTACTGGAATTTTCCGATGAAGTTCACGATCGATGAGGCTGCCGCACAGAGCAATCGTCTCAATCTTAAGATCAAATTCGTTTCCAGTCGGAGCTTAGGCGATAGGAAGATCGGGAAGGTTATTGTTCCGATCAAGCGATTGCTCGATGAAAGTGCTAAAGGAGATGAAGGAAAATCCGAGAGAACCCTAACTTTCAGCGTCAGGACGTTAAGCGGAAAGGAAAAAGGTACCGTCGAATTTTCGTACAAATTTGGGGAAAAATACACGGTTCAGGCACCTCCACCGCCACCGCCACCGCCGGTTATGAAGTCCGGTGAGCCGGTTACAGCTTATCCCCTAGGTTATCCTGGATCTAGTTCCGGATATGCGGCCGGAGGTGCACATCCGCCTCCTGCGGGAACCGCTTATGCATATCCGCCTCCGCAGCAAGGATACGGATATCCACCGCCTCCACAGGCTGGATATGGCTACGGCGGTTACCCTCCGCCGCAGCAGGGGTATGGATATGCGCCGTATAAGCCACAGAGGCCGCAGAGGAGCGGTATGGGCGGTATGGCTTTGGGAGCCGGAGCTGGTCTGCTTGGAGGTTTGCTAATCGGCGACATGATCTCAGATGTGGGTGATTCGATGGCTTATGATGCTGGATATGATGCTGGTTTTGGTGATGGCTTTGATTTCTAA ATGGAGTGTAGAACTTTAGATATCAACATCAAGAGGGCCTACGGCCTCAAGAACGTCAATCTCTTCTCCACCATGGATGTATACGCCGTCGTTTCGATCTCCGGTGATCCCCGCGGGAAGTCGAAGCAGAGGACTCCGGTGGCTAGAGATAGTGGCTCAGATCCTTACTGGAATTTTCCGATGAAGTTCACGATCGATGAGGCTGCCGCACAGAGCAATCGTCTCAATCTTAAGATCAAATTCGTTTCCAGTCGGAGCTTAGGCGATAGGAAGATCGGGAAGGTTATTGTTCCGATCAAGCGATTGCTCGATGAAAGTGCTAAAGGAGATGAAGGAAAATCCGAGAGAACCCTAACTTTCAGCGTCAGGACGTTAAGCGGAAAGGAAAAAGGTACCGTCGAATTTTCGTACAAATTTGGGGAAAAATACACGGTTCAGGCACCTCCACCGCCACCGCCACCGCCGGTTATGAAGTCCGGTGAGCCGGTTACAGCTTATCCCCTAGGTTATCCTGGATCTAGTTCCGGATATGCGGCCGGAGGTGCACATCCGCCTCCTGCGGGAACCGCTTATGCATATCCGCCTCCGCAGCAAGGATACGGATATCCACCGCCTCCACAGGCTGGATATGGCTACGGCGGTTACCCTCCGCCGCAGCAGGGGTATGGATATGCGCCGTATAAGCCACAGAGGCCGCAGAGGAGCGGTATGGGCGGTATGGCTTTGGGAGCCGGAGCTGGTCTGCTTGGAGGTTTGCTAATCGGCGACATGATCTCAGATGTGGGTGATTCGATGGCTTATGATGCTGGATATGATGCTGGTTTTGGTGATGGCTTTGATTTCTAA ATGGAGTGTAGAACTTTAGATATCAACATCAAGAGGGCCTACGGCCTCAAGAACGTCAATCTCTTCTCCACCATGGATGTATACGCCGTCGTTTCGATCTCCGGTGATCCCCGCGGGAAGTCGAAGCAGAGGACTCCGGTGGCTAGAGATAGTGGCTCAGATCCTTACTGGAATTTTCCGATGAAGTTCACGATCGATGAGGCTGCCGCACAGAGCAATCGTCTCAATCTTAAGATCAAATTCGTTTCCAGTCGGAGCTTAGGCGATAGGAAGATCGGGAAGGTTATTGTTCCGATCAAGCGATTGCTCGATGAAAGTGCTAAAGGAGATGAAGGAAAATCCGAGAGAACCCTAACTTTCAGCGTCAGGACGTTAAGCGGAAAGGAAAAAGGTACCGTCGAATTTTCGTACAAATTTGGGGAAAAATACACGGTTCAGGCACCTCCACCGCCACCGCCACCGCCGGTTATGAAGTCCGGTGAGCCGGTTACAGCTTATCCCCTAGGTTATCCTGGATCTAGTTCCGGATATGCGGCCGGAGGTGCACATCCGCCTCCTGCGGGAACCGCTTATGCATATCCGCCTCCGCAGCAAGGATACGGATATCCACCGCCTCCACAGGCTGGATATGGCTACGGCGGTTACCCTCCGCCGCAGCAGGGGTATGGATATGCGCCGTATAAGCCACAGAGGCCGCAGAGGAGCGGTATGGGCGGTATGGCTTTGGGAGCCGGAGCTGGTCTGCTTGGAGGTTTGCTAATCGGCGACATGATCTCAGATGTGGGTGATTCGATGGCTTATGATGCTGGATATGATGCTGGTTTTGGTGATGGCTTTGATTTCTAA MECRTLDINIKRAYGLKNVNLFSTMDVYAVVSISGDPRGKSKQRTPVARDSGSDPYWNFPMKFTIDEAAAQSNRLNLKIKFVSSRSLGDRKIGKVIVPIKRLLDESAKGDEGKSERTLTFSVRTLSGKEKGTVEFSYKFGEKYTVQAPPPPPPPPVMKSGEPVTAYPLGYPGSSSGYAAGGAHPPPAGTAYAYPPPQQGYGYPPPPQAGYGYGGYPPPQQGYGYAPYKPQRPQRSGMGGMALGAGAGLLGGLLIGDMISDVGDSMAYDAGYDAGFGDGFDF
BLAST of Carg26763-RA vs. NCBI nr
Match: XP_023545314.1 (protein SRC2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 361.7 bits (927), Expect = 2.3e-96 Identity = 242/244 (99.18%), Postives = 244/244 (100.00%), Query Frame = 0
BLAST of Carg26763-RA vs. NCBI nr
Match: XP_022946248.1 (protein SRC2-like [Cucurbita moschata]) HSP 1 Score: 358.6 bits (919), Expect = 1.9e-95 Identity = 242/246 (98.37%), Postives = 243/246 (98.78%), Query Frame = 0
BLAST of Carg26763-RA vs. NCBI nr
Match: XP_022999033.1 (protein SRC2-like [Cucurbita maxima]) HSP 1 Score: 348.6 bits (893), Expect = 2.0e-92 Identity = 234/244 (95.90%), Postives = 237/244 (97.13%), Query Frame = 0
BLAST of Carg26763-RA vs. NCBI nr
Match: XP_008454313.1 (PREDICTED: protein SRC2-like [Cucumis melo]) HSP 1 Score: 300.1 bits (767), Expect = 8.1e-78 Identity = 158/183 (86.34%), Postives = 170/183 (92.90%), Query Frame = 0
BLAST of Carg26763-RA vs. NCBI nr
Match: XP_011648839.1 (PREDICTED: actin cytoskeleton-regulatory complex protein PAN1-like [Cucumis sativus] >KGN60948.1 hypothetical protein Csa_2G030090 [Cucumis sativus]) HSP 1 Score: 298.1 bits (762), Expect = 3.1e-77 Identity = 162/190 (85.26%), Postives = 172/190 (90.53%), Query Frame = 0
BLAST of Carg26763-RA vs. TAIR10
Match: AT1G09070.1 (soybean gene regulated by cold-2) HSP 1 Score: 145.6 bits (366), Expect = 4.6e-35 Identity = 85/183 (46.45%), Postives = 119/183 (65.03%), Query Frame = 0
BLAST of Carg26763-RA vs. TAIR10
Match: AT3G16510.1 (Calcium-dependent lipid-binding (CaLB domain) family protein) HSP 1 Score: 112.5 bits (280), Expect = 4.4e-25 Identity = 61/140 (43.57%), Postives = 88/140 (62.86%), Query Frame = 0
BLAST of Carg26763-RA vs. TAIR10
Match: AT4G15755.1 (Calcium-dependent lipid-binding (CaLB domain) family protein) HSP 1 Score: 103.6 bits (257), Expect = 2.0e-22 Identity = 56/140 (40.00%), Postives = 90/140 (64.29%), Query Frame = 0
BLAST of Carg26763-RA vs. TAIR10
Match: AT3G62780.1 (Calcium-dependent lipid-binding (CaLB domain) family protein) HSP 1 Score: 88.6 bits (218), Expect = 6.7e-18 Identity = 57/143 (39.86%), Postives = 82/143 (57.34%), Query Frame = 0
BLAST of Carg26763-RA vs. TAIR10
Match: AT4G15740.1 (Calcium-dependent lipid-binding (CaLB domain) family protein) HSP 1 Score: 86.3 bits (212), Expect = 3.3e-17 Identity = 64/192 (33.33%), Postives = 103/192 (53.65%), Query Frame = 0
BLAST of Carg26763-RA vs. Swiss-Prot
Match: sp|O04133|SRC2_SOYBN (Protein SRC2 OS=Glycine max OX=3847 GN=SRC2 PE=2 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 6.9e-36 Identity = 91/186 (48.92%), Postives = 117/186 (62.90%), Query Frame = 0
BLAST of Carg26763-RA vs. Swiss-Prot
Match: sp|O04023|SRC2_ARATH (Protein SRC2 homolog OS=Arabidopsis thaliana OX=3702 GN=SRC2 PE=1 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 8.4e-34 Identity = 85/183 (46.45%), Postives = 119/183 (65.03%), Query Frame = 0
BLAST of Carg26763-RA vs. TrEMBL
Match: tr|A0A1S3BYF1|A0A1S3BYF1_CUCME (protein SRC2-like OS=Cucumis melo OX=3656 GN=LOC103494749 PE=4 SV=1) HSP 1 Score: 300.1 bits (767), Expect = 5.4e-78 Identity = 158/183 (86.34%), Postives = 170/183 (92.90%), Query Frame = 0
BLAST of Carg26763-RA vs. TrEMBL
Match: tr|A0A0A0LGE9|A0A0A0LGE9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G030090 PE=4 SV=1) HSP 1 Score: 298.1 bits (762), Expect = 2.0e-77 Identity = 162/190 (85.26%), Postives = 172/190 (90.53%), Query Frame = 0
BLAST of Carg26763-RA vs. TrEMBL
Match: tr|A0A218VRJ0|A0A218VRJ0_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr020223 PE=4 SV=1) HSP 1 Score: 186.4 bits (472), Expect = 8.7e-44 Identity = 110/198 (55.56%), Postives = 136/198 (68.69%), Query Frame = 0
BLAST of Carg26763-RA vs. TrEMBL
Match: tr|M5WC75|M5WC75_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G322500 PE=4 SV=1) HSP 1 Score: 183.7 bits (465), Expect = 5.6e-43 Identity = 99/180 (55.00%), Postives = 125/180 (69.44%), Query Frame = 0
BLAST of Carg26763-RA vs. TrEMBL
Match: tr|A0A067JHR5|A0A067JHR5_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_23324 PE=4 SV=1) HSP 1 Score: 178.7 bits (452), Expect = 1.8e-41 Identity = 101/190 (53.16%), Postives = 128/190 (67.37%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
|